Wall clock time and date at job start Tue Mar 31 2020 20:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47042 * 2 1 4 4 C 1.53000 * 109.47543 * 120.00493 * 2 1 3 5 5 C 1.53003 * 109.47051 * 59.99894 * 4 2 1 6 6 C 1.53001 * 109.46986 * 60.00140 * 5 4 2 7 7 C 1.53000 * 109.47111 * 299.99823 * 6 5 4 8 8 C 1.53001 * 109.47007 * 240.00667 * 2 1 3 9 9 C 1.52998 * 109.47476 * 59.99537 * 8 2 1 10 10 N 1.46492 * 109.47301 * 176.16184 * 9 8 2 11 11 C 1.36946 * 120.00176 * 175.03010 * 10 9 8 12 12 H 1.08006 * 119.99461 * 359.72156 * 11 10 9 13 13 C 1.38809 * 120.00153 * 179.72687 * 11 10 9 14 14 N 1.31621 * 119.99910 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99800 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47463 * 89.99760 * 15 13 11 17 17 H 1.48501 * 109.47290 * 209.99703 * 15 13 11 18 18 H 1.48508 * 109.47350 * 329.99459 * 15 13 11 19 19 N 1.46498 * 109.47051 * 180.02562 * 8 2 1 20 20 C 1.34778 * 120.00017 * 301.89253 * 19 8 2 21 21 O 1.21282 * 119.99846 * 355.44108 * 20 19 8 22 22 C 1.50696 * 120.00373 * 175.44795 * 20 19 8 23 23 N 1.46495 * 109.47375 * 179.97438 * 22 20 19 24 24 C 1.46760 * 124.34987 * 269.72258 * 23 22 20 25 25 C 1.54659 * 105.38228 * 162.85366 * 24 23 22 26 26 C 1.54624 * 101.68498 * 25.76773 * 25 24 23 27 27 C 1.34419 * 124.35189 * 90.02501 * 23 22 20 28 28 O 1.21284 * 124.93753 * 0.38537 * 27 23 22 29 29 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46824 * 299.99357 * 1 2 3 31 31 H 1.08992 * 109.47384 * 59.99480 * 1 2 3 32 32 H 1.09002 * 109.47223 * 300.00482 * 4 2 1 33 33 H 1.08995 * 109.47515 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47291 * 300.00280 * 5 4 2 35 35 H 1.09001 * 109.47043 * 180.02562 * 5 4 2 36 36 H 1.09003 * 109.46983 * 180.02562 * 6 5 4 37 37 H 1.08995 * 109.47076 * 60.00269 * 6 5 4 38 38 H 1.08995 * 109.47515 * 300.00177 * 7 6 5 39 39 H 1.09000 * 109.47182 * 180.02562 * 7 6 5 40 40 H 1.09003 * 109.47040 * 56.16409 * 9 8 2 41 41 H 1.08995 * 109.47458 * 296.16552 * 9 8 2 42 42 H 0.96997 * 120.00446 * 354.74898 * 10 9 8 43 43 H 0.97000 * 119.99284 * 180.02562 * 14 13 11 44 44 H 0.97002 * 120.00384 * 121.89983 * 19 8 2 45 45 H 1.09005 * 109.46979 * 300.00242 * 22 20 19 46 46 H 1.09010 * 109.47345 * 59.99883 * 22 20 19 47 47 H 1.08997 * 110.24907 * 281.98503 * 24 23 22 48 48 H 1.09002 * 110.24588 * 43.98731 * 24 23 22 49 49 H 1.09005 * 111.19712 * 267.59552 * 25 24 23 50 50 H 1.08998 * 110.85505 * 143.79323 * 25 24 23 51 51 H 1.09003 * 110.49065 * 216.30901 * 26 25 24 52 52 H 1.09001 * 110.48796 * 93.66475 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1639 1.2490 6 6 2.0401 -2.8850 -0.0003 7 6 1.5300 -2.1636 -1.2494 8 6 2.0400 -0.7211 -1.2493 9 6 1.5299 0.0001 -2.4985 10 7 2.0923 -0.6349 -3.6929 11 6 1.6965 -0.2236 -4.9378 12 1 0.9664 0.5659 -5.0388 13 6 2.2336 -0.8215 -6.0696 14 7 3.1236 -1.7833 -5.9463 15 14 1.6932 -0.2609 -7.7675 16 1 2.5783 0.8376 -8.2312 17 1 1.7800 -1.4003 -8.7159 18 1 0.2914 0.2257 -7.7054 19 7 3.5050 -0.7217 -1.2490 20 6 4.1793 0.4447 -1.2100 21 8 3.5761 1.4957 -1.2587 22 6 5.6827 0.4428 -1.1062 23 7 6.1722 1.8233 -1.0819 24 6 6.5380 2.5933 -2.2766 25 6 6.5612 4.0711 -1.8210 26 6 6.8556 3.9283 -0.3098 27 6 6.3497 2.5456 0.0377 28 8 6.1349 2.1469 1.1628 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6768 -0.2077 2.1392 33 1 3.1301 -0.7217 1.2489 34 1 0.4401 -2.1639 1.2491 35 1 1.8932 -2.6776 2.1392 36 1 1.6764 -3.9125 -0.0006 37 1 3.1301 -2.8850 -0.0003 38 1 0.4401 -2.1636 -1.2494 39 1 1.8929 -2.6776 -2.1395 40 1 1.8360 1.0458 -2.4648 41 1 0.4422 -0.0590 -2.5336 42 1 2.7480 -1.3439 -3.6022 43 1 3.4991 -2.2007 -6.7372 44 1 3.9897 -1.5614 -1.2770 45 1 5.9829 -0.0657 -0.1899 46 1 6.1057 -0.0773 -1.9657 47 1 7.5222 2.2904 -2.6339 48 1 5.7921 2.4527 -3.0589 49 1 5.5961 4.5499 -1.9868 50 1 7.3579 4.6196 -2.3235 51 1 6.3151 4.6860 0.2575 52 1 7.9267 4.0011 -0.1212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732254621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:56 Heat of formation + Delta-G solvation = -63.411459 kcal Electronic energy + Delta-G solvation = -32112.050554 eV Core-core repulsion = 28111.368709 eV Total energy + Delta-G solvation = -4000.681845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75166 -40.07897 -37.80090 -36.24952 -34.69067 -33.28031 -32.82099 -31.94879 -31.15137 -29.49307 -27.63179 -27.49599 -26.07680 -24.96228 -22.92262 -21.98889 -21.91751 -21.24717 -20.25294 -19.28537 -18.02765 -17.35730 -17.12558 -16.70462 -16.21166 -15.53122 -15.41792 -15.26239 -14.65454 -14.38630 -13.99605 -13.78221 -13.65334 -13.58519 -13.48689 -13.19270 -12.99952 -12.91396 -12.63152 -12.53385 -12.34933 -12.22012 -11.98975 -11.76112 -11.45716 -11.40399 -11.35075 -11.08188 -11.06196 -10.90614 -10.80385 -10.71209 -10.20817 -10.10919 -9.99243 -9.86484 -9.77393 -9.63153 -9.37346 -8.82466 -8.50839 -8.40623 -6.82102 -5.74394 -2.99620 2.56271 2.95183 3.07412 3.43842 3.49608 3.50923 3.68581 4.32792 4.45799 4.61675 4.79516 4.83102 4.94662 4.97655 5.00008 5.12662 5.21877 5.30204 5.34315 5.39208 5.46417 5.52131 5.56932 5.60875 5.62320 5.71685 5.74143 5.75439 5.83063 5.86680 5.89356 5.98128 6.07015 6.14649 6.23260 6.25467 6.28200 6.37592 6.41930 6.51643 6.60138 6.60763 6.65738 6.79674 6.99124 7.13462 7.20606 7.73876 7.95367 8.20759 8.45909 8.69334 9.57205 10.16723 10.52718 11.48961 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007926 B = 0.005207 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.720349 B = 5376.396091 C = 7959.988618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.088 0.912 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.121 4.121 8 C 0.185 3.815 9 C 0.142 3.858 10 N -0.725 5.725 11 C -0.227 4.227 12 H 0.067 0.933 13 C -0.016 4.016 14 N -0.937 5.937 15 Si 0.904 3.096 16 H -0.292 1.292 17 H -0.293 1.293 18 H -0.283 1.283 19 N -0.709 5.709 20 C 0.504 3.496 21 O -0.523 6.523 22 C 0.105 3.895 23 N -0.597 5.597 24 C 0.103 3.897 25 C -0.129 4.129 26 C -0.152 4.152 27 C 0.522 3.478 28 O -0.538 6.538 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.381 0.619 43 H 0.252 0.748 44 H 0.395 0.605 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 3.566 13.090 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.158 4.158 8 C 0.099 3.901 9 C 0.014 3.986 10 N -0.369 5.369 11 C -0.358 4.358 12 H 0.085 0.915 13 C -0.212 4.212 14 N -0.587 5.587 15 Si 0.735 3.265 16 H -0.219 1.219 17 H -0.219 1.219 18 H -0.209 1.209 19 N -0.361 5.361 20 C 0.288 3.712 21 O -0.398 6.398 22 C -0.021 4.021 23 N -0.330 5.330 24 C -0.020 4.020 25 C -0.167 4.167 26 C -0.192 4.192 27 C 0.310 3.690 28 O -0.415 6.415 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.215 0.785 43 H 0.062 0.938 44 H 0.229 0.771 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.118 0.882 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.334 4.139 13.519 15.111 hybrid contribution 0.158 -0.459 -1.227 1.320 sum 5.493 3.680 12.292 13.957 Atomic orbital electron populations 1.21955 0.95092 1.01822 1.01613 1.21404 0.95760 1.01049 0.93603 0.89370 1.21477 1.00530 0.95235 0.97316 1.21575 1.00859 0.95822 0.97419 1.21547 1.00492 0.98755 0.94787 1.21809 1.01726 0.94128 0.98185 1.20513 0.78727 0.95610 0.95248 1.21144 0.95694 0.96512 0.85292 1.42227 1.50878 1.43589 1.00226 1.19238 1.18431 1.14500 0.83675 0.91501 1.24648 0.99836 0.99171 0.97507 1.69645 1.32908 1.28075 1.28094 0.86227 0.78042 0.77410 0.84781 1.21942 1.21908 1.20890 1.45890 1.07014 1.08045 1.75149 1.20787 0.89779 0.84336 0.76251 1.90632 1.69507 1.31322 1.48367 1.21224 0.92417 0.83375 1.05129 1.47733 1.64185 1.13081 1.08023 1.22170 1.01053 0.90701 0.88104 1.22599 1.03719 0.95951 0.94411 1.22284 1.03243 0.95739 0.97951 1.20884 0.76415 0.87624 0.84050 1.90700 1.52774 1.75812 1.22180 0.92278 0.93209 0.92086 0.92652 0.92295 0.91835 0.92713 0.92118 0.92327 0.90429 0.90204 0.94178 0.95650 0.78522 0.93774 0.77060 0.87604 0.87270 0.90955 0.89547 0.89660 0.89333 0.88185 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.15 37.16 0.30 -1.74 16 2 C -0.10 -1.50 2.01 -90.62 -0.18 -1.69 16 3 H 0.09 1.61 6.19 -51.93 -0.32 1.29 16 4 C -0.11 -1.44 5.29 -26.73 -0.14 -1.58 16 5 C -0.12 -1.38 5.65 -26.73 -0.15 -1.53 16 6 C -0.12 -1.41 5.75 -26.73 -0.15 -1.57 16 7 C -0.12 -1.80 4.36 -26.73 -0.12 -1.91 16 8 C 0.18 3.02 0.09 -131.82 -0.01 3.01 16 9 C 0.14 2.98 4.45 -4.05 -0.02 2.96 16 10 N -0.73 -17.93 5.12 -59.91 -0.31 -18.24 16 11 C -0.23 -6.35 9.99 -15.06 -0.15 -6.50 16 12 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 13 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 14 N -0.94 -27.54 13.06 55.49 0.72 -26.82 16 15 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 N -0.71 -10.93 3.44 -47.61 -0.16 -11.09 16 20 C 0.50 8.44 7.31 -10.99 -0.08 8.36 16 21 O -0.52 -10.55 12.71 5.56 0.07 -10.48 16 22 C 0.10 1.41 6.41 -5.20 -0.03 1.38 16 23 N -0.60 -8.15 2.42 -173.68 -0.42 -8.57 16 24 C 0.10 1.15 7.36 -3.03 -0.02 1.13 16 25 C -0.13 -1.18 7.19 -25.00 -0.18 -1.36 16 26 C -0.15 -1.53 6.86 -26.75 -0.18 -1.72 16 27 C 0.52 7.63 8.02 -10.86 -0.09 7.54 16 28 O -0.54 -9.82 17.59 5.55 0.10 -9.72 16 29 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.91 6.52 -51.93 -0.34 0.57 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.83 7.60 -51.93 -0.39 0.44 16 34 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.67 6.90 -51.93 -0.36 0.31 16 38 H 0.08 1.16 6.43 -51.93 -0.33 0.82 16 39 H 0.08 1.37 7.22 -51.93 -0.37 0.99 16 40 H 0.04 0.96 6.27 -51.93 -0.33 0.63 16 41 H 0.03 0.55 6.64 -51.93 -0.34 0.20 16 42 H 0.38 9.62 6.58 -40.82 -0.27 9.35 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.40 5.26 7.38 -40.82 -0.30 4.95 16 45 H 0.11 1.30 7.92 -51.93 -0.41 0.89 16 46 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -34.74 392.19 -8.97 -43.71 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -8.55 Total: 13.64 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.31 Total: 4.23 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.17 Total: -64.71 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.74 -8.97 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732254621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.705 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds