Wall clock time and date at job start Tue Mar 31 2020 22:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52352 * 2 1 4 4 C 1.53039 * 109.49806 * 120.08331 * 2 1 3 5 5 C 1.53045 * 109.52437 * 181.30979 * 4 2 1 6 6 C 1.53190 * 109.31239 * 298.63921 * 5 4 2 7 7 N 1.46934 * 108.77603 * 54.63708 * 6 5 4 8 8 C 1.34774 * 120.63094 * 126.40851 * 7 6 5 9 9 O 1.21275 * 120.00079 * 174.90096 * 8 7 6 10 10 C 1.50700 * 119.99972 * 354.90031 * 8 7 6 11 11 C 1.53781 * 113.61714 * 277.49391 * 10 8 7 12 12 C 1.53777 * 87.08309 * 220.02261 * 11 10 8 13 13 C 1.53778 * 87.08413 * 25.43326 * 12 11 10 14 14 C 1.46930 * 118.73760 * 306.39294 * 7 6 5 15 15 H 1.08999 * 109.58348 * 293.81630 * 14 7 6 16 16 C 1.52999 * 109.58491 * 173.53298 * 14 7 6 17 17 N 1.46902 * 109.46986 * 73.68318 * 16 14 7 18 18 C 1.46898 * 111.00198 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47437 * 179.97438 * 18 17 16 20 20 O 1.21288 * 119.99770 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00338 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00339 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00082 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00408 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00212 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99767 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47277 * 89.99480 * 26 24 22 28 28 H 1.48500 * 109.47099 * 209.99942 * 26 24 22 29 29 H 1.48502 * 109.47095 * 329.99717 * 26 24 22 30 30 H 1.09001 * 109.47233 * 299.91715 * 1 2 3 31 31 H 1.09006 * 109.47556 * 59.91337 * 1 2 3 32 32 H 1.09000 * 109.47542 * 179.91763 * 1 2 3 33 33 H 1.08999 * 109.46175 * 61.29860 * 4 2 1 34 34 H 1.08998 * 109.46203 * 301.32028 * 4 2 1 35 35 H 1.09000 * 109.49712 * 58.59135 * 5 4 2 36 36 H 1.08993 * 109.49555 * 178.65924 * 5 4 2 37 37 H 1.09000 * 109.58847 * 174.42198 * 6 5 4 38 38 H 1.09001 * 109.59311 * 294.85439 * 6 5 4 39 39 H 1.09003 * 112.85076 * 48.80204 * 10 8 7 40 40 H 1.09007 * 113.61072 * 334.57350 * 11 10 8 41 41 H 1.09005 * 113.61644 * 105.46806 * 11 10 8 42 42 H 1.09000 * 113.61133 * 270.88318 * 12 11 10 43 43 H 1.09005 * 113.68990 * 139.99428 * 12 11 10 44 44 H 1.09003 * 113.61552 * 220.02425 * 13 12 11 45 45 H 1.08993 * 113.68969 * 89.12706 * 13 12 11 46 46 H 1.09001 * 109.47217 * 193.67939 * 16 14 7 47 47 H 1.08998 * 109.47370 * 313.68288 * 16 14 7 48 48 H 1.00903 * 111.00150 * 56.04076 * 17 16 14 49 49 H 1.08999 * 109.47224 * 300.00444 * 18 17 16 50 50 H 1.09007 * 109.46717 * 59.99812 * 18 17 16 51 51 H 0.97004 * 119.99341 * 0.02562 * 21 19 18 52 52 H 0.97003 * 120.00262 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5709 -0.6950 1.2655 6 6 4.1050 -1.4266 0.0301 7 7 3.5040 -0.8289 -1.1701 8 6 4.2802 -0.3860 -2.1789 9 8 3.7715 0.0200 -3.2022 10 6 5.7803 -0.3953 -2.0353 11 6 6.3339 0.8210 -1.2743 12 6 7.4829 0.8385 -2.2963 13 6 6.5208 0.1406 -3.2721 14 6 2.0406 -0.7235 -1.2497 15 1 1.6046 -1.7213 -1.2981 16 6 1.6506 0.0679 -2.4996 17 7 1.8588 -0.7652 -3.6915 18 6 1.4934 -0.0366 -4.9136 19 6 1.7203 -0.9209 -6.1126 20 8 2.1443 -2.0475 -5.9636 21 7 1.4522 -0.4600 -7.3503 22 6 1.6581 -1.2646 -8.4410 23 1 2.0348 -2.2681 -8.3084 24 6 1.3812 -0.7896 -9.7171 25 7 1.5781 -1.5611 -10.7625 26 14 0.7289 0.9457 -9.9465 27 1 1.8673 1.8844 -10.1135 28 1 -0.1342 0.9945 -11.1539 29 1 -0.0651 1.3377 -8.7544 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 1.6967 -1.7573 1.2352 34 1 1.6584 -0.2244 2.1389 35 1 3.9159 0.3389 1.2536 36 1 3.9336 -1.1893 2.1667 37 1 5.1892 -1.3245 -0.0147 38 1 3.8372 -2.4817 0.0859 39 1 6.1652 -1.3494 -1.6754 40 1 5.6897 1.6988 -1.3264 41 1 6.6562 0.5910 -0.2587 42 1 8.3341 0.2223 -2.0067 43 1 7.7735 1.8407 -2.6114 44 1 6.9941 -0.6388 -3.8694 45 1 5.9274 0.8313 -3.8711 46 1 0.6009 0.3544 -2.4355 47 1 2.2680 0.9634 -2.5700 48 1 1.3468 -1.6319 -3.6208 49 1 0.4425 0.2489 -4.8659 50 1 2.1094 0.8584 -5.0008 51 1 1.1134 0.4411 -7.4694 52 1 1.3851 -1.2294 -11.6533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732531833.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:27 Heat of formation + Delta-G solvation = -15.822537 kcal Electronic energy + Delta-G solvation = -31190.072119 eV Core-core repulsion = 27191.453885 eV Total energy + Delta-G solvation = -3998.618235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.81696 -38.73192 -38.17589 -36.85062 -35.19211 -33.88433 -33.60252 -32.04686 -31.48942 -28.66639 -26.92108 -26.43066 -25.66011 -25.31401 -23.88243 -22.80650 -21.53292 -20.77711 -19.98647 -19.18190 -18.67588 -18.10497 -17.14402 -16.17053 -15.87024 -15.56130 -15.26667 -15.21567 -14.86156 -14.71000 -14.56234 -14.01384 -13.85988 -13.60170 -13.33919 -13.08308 -12.89709 -12.79967 -12.69650 -12.58394 -12.39736 -12.25955 -12.07905 -11.94196 -11.74947 -11.65945 -11.42223 -11.18998 -11.06712 -11.00243 -10.96197 -10.91758 -10.57419 -10.49172 -10.45132 -10.41965 -9.85906 -9.43054 -8.74326 -8.40948 -8.30314 -8.03807 -7.49830 -6.19192 -3.69311 2.99921 3.08647 3.11938 3.16324 3.22774 3.95806 4.20691 4.24413 4.38386 4.46353 4.53755 4.59416 4.65226 4.66651 4.78728 4.80441 4.95487 5.03732 5.14855 5.17828 5.27864 5.32353 5.37389 5.42872 5.45362 5.47430 5.51333 5.53060 5.58088 5.65842 5.67373 5.71773 5.75582 5.83697 5.84442 5.91874 5.96388 5.98748 6.05900 6.09101 6.12102 6.20414 6.28903 6.41207 6.71983 7.46966 7.65950 7.74480 7.96488 8.29398 8.67175 8.75440 9.09385 9.57422 10.01663 10.94568 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.003214 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.754050 B = 8709.226605 C =10118.542900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.111 3.889 7 N -0.611 5.611 8 C 0.505 3.495 9 O -0.460 6.460 10 C -0.136 4.136 11 C -0.120 4.120 12 C -0.143 4.143 13 C -0.116 4.116 14 C 0.159 3.841 15 H 0.067 0.933 16 C 0.072 3.928 17 N -0.629 5.629 18 C 0.061 3.939 19 C 0.459 3.541 20 O -0.564 6.564 21 N -0.597 5.597 22 C -0.299 4.299 23 H 0.118 0.882 24 C 0.039 3.961 25 N -0.887 5.887 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.278 1.278 29 H -0.270 1.270 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.019 0.981 47 H 0.086 0.914 48 H 0.329 0.671 49 H 0.031 0.969 50 H 0.086 0.914 51 H 0.369 0.631 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 7.113 28.274 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.013 4.013 7 N -0.348 5.348 8 C 0.291 3.709 9 O -0.330 6.330 10 C -0.157 4.157 11 C -0.158 4.158 12 C -0.181 4.181 13 C -0.154 4.154 14 C 0.055 3.945 15 H 0.085 0.915 16 C -0.058 4.058 17 N -0.262 5.262 18 C -0.072 4.072 19 C 0.245 3.755 20 O -0.445 6.445 21 N -0.238 5.238 22 C -0.428 4.428 23 H 0.135 0.865 24 C -0.163 4.163 25 N -0.528 5.528 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.204 1.204 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.037 0.963 47 H 0.104 0.896 48 H 0.147 0.853 49 H 0.049 0.951 50 H 0.104 0.896 51 H 0.202 0.798 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.306 6.692 27.468 28.765 hybrid contribution -1.490 1.173 -0.176 1.904 sum 3.815 7.864 27.292 28.658 Atomic orbital electron populations 1.21873 0.94513 1.02185 1.02067 1.21491 0.95887 1.00055 0.94610 0.90843 1.21562 0.95245 1.00855 0.97393 1.21926 0.96180 1.01372 0.97826 1.21634 0.98345 0.96835 0.84445 1.47897 1.05566 1.62831 1.18490 1.20359 0.88297 0.79229 0.82966 1.90923 1.72700 1.42923 1.26408 1.22773 0.92913 0.99753 1.00254 1.22783 0.97787 0.97317 0.97920 1.22837 0.96757 1.01220 0.97280 1.22774 0.96717 1.00443 0.95422 1.21161 0.80316 0.98891 0.94147 0.91506 1.22131 0.96978 0.97886 0.88761 1.60303 1.61073 1.05527 0.99254 1.21534 0.97688 0.97538 0.90409 1.19827 0.83487 0.88591 0.83638 1.90537 1.48289 1.20279 1.85389 1.42215 1.60434 1.14868 1.06246 1.19424 1.41078 0.99331 0.83000 0.86457 1.25012 0.98047 0.98082 0.95188 1.69626 1.48581 1.36159 0.98451 0.86669 0.79511 0.84829 0.78364 1.19692 1.20353 1.19580 0.92491 0.92030 0.92457 0.91757 0.91801 0.91558 0.91030 0.89859 0.91885 0.87920 0.90046 0.91346 0.90230 0.91295 0.91142 0.88650 0.96330 0.89557 0.85264 0.95130 0.89558 0.79839 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.98 37.16 0.33 -0.82 16 2 C -0.10 -0.85 2.34 -90.52 -0.21 -1.06 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -0.77 5.17 -26.69 -0.14 -0.91 16 5 C -0.13 -0.85 6.08 -26.61 -0.16 -1.01 16 6 C 0.11 0.88 6.33 -3.71 -0.02 0.86 16 7 N -0.61 -6.85 2.97 -165.23 -0.49 -7.34 16 8 C 0.51 6.92 6.95 -10.99 -0.08 6.84 16 9 O -0.46 -8.07 9.47 5.56 0.05 -8.02 16 10 C -0.14 -1.48 2.75 -90.95 -0.25 -1.73 16 11 C -0.12 -1.03 7.43 -25.92 -0.19 -1.22 16 12 C -0.14 -1.27 8.08 -25.92 -0.21 -1.48 16 13 C -0.12 -1.40 7.41 -25.92 -0.19 -1.59 16 14 C 0.16 1.78 2.53 -67.61 -0.17 1.61 16 15 H 0.07 0.80 8.06 -51.93 -0.42 0.39 16 16 C 0.07 0.98 4.28 -3.82 -0.02 0.97 16 17 N -0.63 -11.20 3.61 -115.05 -0.42 -11.62 16 18 C 0.06 1.18 5.79 -4.98 -0.03 1.15 16 19 C 0.46 11.44 7.82 -10.99 -0.09 11.36 16 20 O -0.56 -16.34 15.78 5.55 0.09 -16.25 16 21 N -0.60 -15.39 5.09 -10.97 -0.06 -15.45 16 22 C -0.30 -8.96 10.16 -14.94 -0.15 -9.12 16 23 H 0.12 3.99 7.39 -52.49 -0.39 3.60 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 25 N -0.89 -27.02 13.96 55.50 0.77 -26.24 16 26 Si 0.88 20.49 27.74 -169.99 -4.71 15.77 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.27 -5.79 6.52 56.52 0.37 -5.42 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.52 6.37 -51.93 -0.33 0.19 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.57 5.67 -51.93 -0.29 0.28 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.99 7.24 -51.93 -0.38 0.61 16 40 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.10 1.37 7.43 -51.93 -0.39 0.98 16 46 H 0.02 0.24 6.13 -51.93 -0.32 -0.08 16 47 H 0.09 1.30 6.31 -51.93 -0.33 0.97 16 48 H 0.33 6.07 8.37 -39.29 -0.33 5.75 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 1.63 7.92 -51.92 -0.41 1.22 16 51 H 0.37 8.46 5.76 -40.82 -0.24 8.23 16 52 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -35.29 395.87 -9.37 -44.66 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -8.90 Total: 13.65 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.67 Total: 4.87 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.19 Total: -60.65 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.14 Total: -24.27 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.71 Total: 15.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.29 -9.37 -44.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531833.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.839 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds