Wall clock time and date at job start Tue Mar 31 2020 22:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52352 * 2 1 4 4 C 1.53039 * 109.49806 * 120.08331 * 2 1 3 5 5 C 1.53045 * 109.52437 * 181.30979 * 4 2 1 6 6 C 1.53190 * 109.31239 * 298.63921 * 5 4 2 7 7 N 1.46934 * 108.77603 * 54.63708 * 6 5 4 8 8 C 1.34774 * 120.63094 * 126.40851 * 7 6 5 9 9 O 1.21275 * 120.00079 * 174.90096 * 8 7 6 10 10 C 1.50700 * 119.99972 * 354.90031 * 8 7 6 11 11 C 1.53781 * 113.61714 * 277.49391 * 10 8 7 12 12 C 1.53777 * 87.08309 * 220.02261 * 11 10 8 13 13 C 1.53778 * 87.08413 * 25.43326 * 12 11 10 14 14 C 1.46930 * 118.73760 * 306.39294 * 7 6 5 15 15 H 1.08999 * 109.58348 * 293.81630 * 14 7 6 16 16 C 1.52999 * 109.58491 * 173.53298 * 14 7 6 17 17 N 1.46902 * 109.46986 * 73.68318 * 16 14 7 18 18 C 1.46898 * 111.00198 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47437 * 179.97438 * 18 17 16 20 20 O 1.21288 * 119.99770 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00338 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00339 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00082 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00408 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00212 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99767 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47277 * 89.99480 * 26 24 22 28 28 H 1.48500 * 109.47099 * 209.99942 * 26 24 22 29 29 H 1.48502 * 109.47095 * 329.99717 * 26 24 22 30 30 H 1.09001 * 109.47233 * 299.91715 * 1 2 3 31 31 H 1.09006 * 109.47556 * 59.91337 * 1 2 3 32 32 H 1.09000 * 109.47542 * 179.91763 * 1 2 3 33 33 H 1.08999 * 109.46175 * 61.29860 * 4 2 1 34 34 H 1.08998 * 109.46203 * 301.32028 * 4 2 1 35 35 H 1.09000 * 109.49712 * 58.59135 * 5 4 2 36 36 H 1.08993 * 109.49555 * 178.65924 * 5 4 2 37 37 H 1.09000 * 109.58847 * 174.42198 * 6 5 4 38 38 H 1.09001 * 109.59311 * 294.85439 * 6 5 4 39 39 H 1.09003 * 112.85076 * 48.80204 * 10 8 7 40 40 H 1.09007 * 113.61072 * 334.57350 * 11 10 8 41 41 H 1.09005 * 113.61644 * 105.46806 * 11 10 8 42 42 H 1.09000 * 113.61133 * 270.88318 * 12 11 10 43 43 H 1.09005 * 113.68990 * 139.99428 * 12 11 10 44 44 H 1.09003 * 113.61552 * 220.02425 * 13 12 11 45 45 H 1.08993 * 113.68969 * 89.12706 * 13 12 11 46 46 H 1.09001 * 109.47217 * 193.67939 * 16 14 7 47 47 H 1.08998 * 109.47370 * 313.68288 * 16 14 7 48 48 H 1.00903 * 111.00150 * 56.04076 * 17 16 14 49 49 H 1.08999 * 109.47224 * 300.00444 * 18 17 16 50 50 H 1.09007 * 109.46717 * 59.99812 * 18 17 16 51 51 H 0.97004 * 119.99341 * 0.02562 * 21 19 18 52 52 H 0.97003 * 120.00262 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5709 -0.6950 1.2655 6 6 4.1050 -1.4266 0.0301 7 7 3.5040 -0.8289 -1.1701 8 6 4.2802 -0.3860 -2.1789 9 8 3.7715 0.0200 -3.2022 10 6 5.7803 -0.3953 -2.0353 11 6 6.3339 0.8210 -1.2743 12 6 7.4829 0.8385 -2.2963 13 6 6.5208 0.1406 -3.2721 14 6 2.0406 -0.7235 -1.2497 15 1 1.6046 -1.7213 -1.2981 16 6 1.6506 0.0679 -2.4996 17 7 1.8588 -0.7652 -3.6915 18 6 1.4934 -0.0366 -4.9136 19 6 1.7203 -0.9209 -6.1126 20 8 2.1443 -2.0475 -5.9636 21 7 1.4522 -0.4600 -7.3503 22 6 1.6581 -1.2646 -8.4410 23 1 2.0348 -2.2681 -8.3084 24 6 1.3812 -0.7896 -9.7171 25 7 1.5781 -1.5611 -10.7625 26 14 0.7289 0.9457 -9.9465 27 1 1.8673 1.8844 -10.1135 28 1 -0.1342 0.9945 -11.1539 29 1 -0.0651 1.3377 -8.7544 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 1.6967 -1.7573 1.2352 34 1 1.6584 -0.2244 2.1389 35 1 3.9159 0.3389 1.2536 36 1 3.9336 -1.1893 2.1667 37 1 5.1892 -1.3245 -0.0147 38 1 3.8372 -2.4817 0.0859 39 1 6.1652 -1.3494 -1.6754 40 1 5.6897 1.6988 -1.3264 41 1 6.6562 0.5910 -0.2587 42 1 8.3341 0.2223 -2.0067 43 1 7.7735 1.8407 -2.6114 44 1 6.9941 -0.6388 -3.8694 45 1 5.9274 0.8313 -3.8711 46 1 0.6009 0.3544 -2.4355 47 1 2.2680 0.9634 -2.5700 48 1 1.3468 -1.6319 -3.6208 49 1 0.4425 0.2489 -4.8659 50 1 2.1094 0.8584 -5.0008 51 1 1.1134 0.4411 -7.4694 52 1 1.3851 -1.2294 -11.6533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732531833.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:24 Heat of formation + Delta-G solvation = -40.583506 kcal Electronic energy + Delta-G solvation = -31191.145835 eV Core-core repulsion = 27191.453885 eV Total energy + Delta-G solvation = -3999.691951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73092 -40.25811 -39.46948 -37.79097 -36.54469 -35.83820 -34.58604 -33.76401 -32.89249 -29.78495 -28.22364 -27.11484 -26.69593 -26.48014 -25.30651 -23.96418 -22.34184 -21.54231 -21.33347 -20.76877 -20.21269 -19.50828 -18.06887 -17.72759 -17.12412 -16.87566 -16.63049 -16.22416 -16.07592 -15.66868 -15.56157 -15.54458 -15.18125 -14.76663 -14.48263 -14.29882 -14.28601 -14.13244 -13.83112 -13.52871 -13.45130 -13.37662 -13.16732 -13.12169 -12.81030 -12.78525 -12.61536 -12.52975 -12.43805 -11.99853 -11.89673 -11.86482 -11.66912 -11.53945 -11.53653 -11.34786 -11.23335 -11.18585 -10.41572 -10.26133 -9.76533 -9.34154 -8.80617 -8.43460 -6.03748 1.26945 1.32774 1.41172 1.95692 2.00878 2.20539 2.23277 2.77649 3.12743 3.44860 3.62832 3.67848 3.75937 3.88079 3.95462 3.97161 3.98636 4.13078 4.17684 4.22248 4.31915 4.38148 4.39802 4.53107 4.58588 4.62662 4.69489 4.75297 4.76358 4.82547 4.87078 4.88726 4.93873 4.96092 5.05958 5.08908 5.10845 5.19782 5.25915 5.26315 5.29354 5.37169 5.51311 5.53888 5.56559 5.85523 5.90022 6.18569 6.57726 6.61000 6.74635 6.86470 7.38299 7.67041 7.95963 8.74619 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.003214 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.754050 B = 8709.226605 C =10118.542900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.127 4.127 6 C 0.104 3.896 7 N -0.610 5.610 8 C 0.494 3.506 9 O -0.510 6.510 10 C -0.135 4.135 11 C -0.104 4.104 12 C -0.129 4.129 13 C -0.133 4.133 14 C 0.158 3.842 15 H 0.057 0.943 16 C 0.079 3.921 17 N -0.644 5.644 18 C 0.079 3.921 19 C 0.454 3.546 20 O -0.612 6.612 21 N -0.594 5.594 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.258 1.258 28 H -0.270 1.270 29 H -0.235 1.235 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.320 0.680 49 H 0.062 0.938 50 H 0.094 0.906 51 H 0.388 0.612 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 9.826 31.582 33.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.165 4.165 6 C -0.019 4.019 7 N -0.345 5.345 8 C 0.282 3.718 9 O -0.384 6.384 10 C -0.156 4.156 11 C -0.141 4.141 12 C -0.167 4.167 13 C -0.171 4.171 14 C 0.054 3.946 15 H 0.075 0.925 16 C -0.049 4.049 17 N -0.276 5.276 18 C -0.054 4.054 19 C 0.242 3.758 20 O -0.497 6.497 21 N -0.236 5.236 22 C -0.458 4.458 23 H 0.071 0.929 24 C -0.213 4.213 25 N -0.575 5.575 26 Si 0.785 3.215 27 H -0.183 1.183 28 H -0.194 1.194 29 H -0.159 1.159 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.092 0.908 48 H 0.138 0.862 49 H 0.080 0.920 50 H 0.112 0.888 51 H 0.223 0.777 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.887 9.406 30.843 32.614 hybrid contribution -1.307 0.167 -1.217 1.793 sum 3.580 9.573 29.627 31.340 Atomic orbital electron populations 1.21862 0.93906 1.02267 1.02415 1.21419 0.96298 0.99566 0.93825 0.91144 1.21572 0.95707 1.00723 0.96877 1.21891 0.95645 1.01415 0.97584 1.21906 0.99216 0.96932 0.83809 1.48012 1.05507 1.61959 1.18997 1.20911 0.89609 0.78549 0.82741 1.90886 1.73750 1.45405 1.28336 1.22841 0.91025 1.01607 1.00138 1.22700 0.96784 0.95500 0.99146 1.22813 0.96841 1.01280 0.95726 1.22781 0.98021 1.00155 0.96168 1.21186 0.80647 0.98355 0.94450 0.92514 1.22094 0.97537 0.97154 0.88098 1.60318 1.61425 1.05767 1.00064 1.21365 0.99555 0.96090 0.88363 1.20973 0.81412 0.88580 0.84794 1.90505 1.50028 1.22860 1.86269 1.42041 1.60812 1.15202 1.05537 1.19006 1.43343 0.97982 0.85424 0.92862 1.26093 0.97269 1.04171 0.93752 1.69800 1.49079 1.39255 0.99407 0.85358 0.79436 0.76868 0.79813 1.18288 1.19426 1.15896 0.90868 0.92939 0.92509 0.91818 0.90153 0.91408 0.88710 0.88425 0.91813 0.86304 0.90954 0.88252 0.88239 0.90919 0.92594 0.91814 0.94838 0.90822 0.86248 0.92036 0.88837 0.77723 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.98 71.98 0.65 -1.32 16 2 C -0.09 -1.35 2.34 -10.73 -0.03 -1.38 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.11 -1.17 5.17 30.62 0.16 -1.02 16 5 C -0.13 -1.16 6.08 30.67 0.19 -0.98 16 6 C 0.10 1.41 6.33 86.36 0.55 1.95 16 7 N -0.61 -13.16 2.97 -795.07 -2.36 -15.52 16 8 C 0.49 13.66 6.95 87.66 0.61 14.27 16 9 O -0.51 -18.63 9.47 -3.01 -0.03 -18.66 16 10 C -0.13 -2.86 2.75 -11.01 -0.03 -2.89 16 11 C -0.10 -1.55 7.43 31.12 0.23 -1.32 16 12 C -0.13 -2.10 8.08 31.12 0.25 -1.84 16 13 C -0.13 -3.34 7.41 31.12 0.23 -3.11 16 14 C 0.16 3.43 2.53 44.96 0.11 3.55 16 15 H 0.06 1.36 8.06 -2.39 -0.02 1.34 16 16 C 0.08 2.16 4.28 86.30 0.37 2.53 16 17 N -0.64 -23.46 3.61 -517.92 -1.87 -25.33 16 18 C 0.08 3.04 5.79 85.56 0.50 3.54 16 19 C 0.45 23.47 7.82 87.66 0.69 24.16 16 20 O -0.61 -37.74 15.78 -3.06 -0.05 -37.79 16 21 N -0.59 -31.22 5.09 -307.00 -1.56 -32.78 16 22 C -0.33 -20.66 10.16 84.04 0.85 -19.80 16 23 H 0.05 3.95 7.39 -2.91 -0.02 3.93 16 24 C -0.01 -0.85 5.50 84.93 0.47 -0.38 16 25 N -0.93 -58.80 13.96 21.66 0.30 -58.49 16 26 Si 0.97 41.62 27.74 68.60 1.90 43.52 16 27 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.24 -8.78 6.52 99.48 0.65 -8.13 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.79 6.37 -2.38 -0.02 0.78 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.10 1.04 5.67 -2.39 -0.01 1.03 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.12 2.11 7.24 -2.39 -0.02 2.09 16 40 H 0.07 1.24 8.09 -2.38 -0.02 1.22 16 41 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.99 7.43 -2.39 -0.02 1.97 16 46 H 0.03 0.81 6.13 -2.39 -0.01 0.80 16 47 H 0.07 2.23 6.31 -2.39 -0.02 2.21 16 48 H 0.32 12.27 8.37 -89.69 -0.75 11.52 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 50 H 0.09 3.51 7.92 -2.38 -0.02 3.49 16 51 H 0.39 17.26 5.76 -92.71 -0.53 16.72 16 52 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -84.51 395.87 1.71 -82.81 By element: Atomic # 1 Polarization: 46.70 SS G_CDS: -0.42 Total: 46.28 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 5.79 Total: 15.97 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -5.49 Total: -132.13 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.08 Total: -56.44 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.90 Total: 43.52 kcal Total: -84.51 1.71 -82.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531833.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.223 kcal (2) G-P(sol) polarization free energy of solvation -84.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds