Wall clock time and date at job start Tue Mar 31 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.49465 * 2 1 4 4 C 1.53038 * 109.49629 * 239.93353 * 2 1 3 5 5 C 1.53044 * 109.53444 * 178.64716 * 4 2 1 6 6 C 1.53191 * 109.31125 * 61.36795 * 5 4 2 7 7 N 1.46925 * 108.77453 * 305.36359 * 6 5 4 8 8 C 1.34778 * 120.62660 * 233.58441 * 7 6 5 9 9 O 1.21286 * 119.99592 * 174.03202 * 8 7 6 10 10 C 1.50696 * 120.00467 * 354.30689 * 8 7 6 11 11 C 1.53784 * 113.61473 * 278.86308 * 10 8 7 12 12 C 1.53948 * 87.01939 * 220.04658 * 11 10 8 13 13 C 1.53774 * 113.61709 * 181.25436 * 10 8 7 14 14 C 1.46923 * 118.74320 * 53.86003 * 7 6 5 15 15 H 1.09007 * 109.58692 * 65.92319 * 14 7 6 16 16 C 1.52994 * 109.59109 * 186.35213 * 14 7 6 17 17 N 1.46903 * 109.46973 * 290.82832 * 16 14 7 18 18 C 1.46901 * 110.99522 * 179.97438 * 17 16 14 19 19 C 1.50713 * 109.46905 * 179.97438 * 18 17 16 20 20 O 1.21296 * 119.99446 * 0.02562 * 19 18 17 21 21 N 1.34767 * 119.99915 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99980 * 180.02562 * 21 19 18 23 23 H 1.07994 * 119.99726 * 359.97438 * 22 21 19 24 24 C 1.38942 * 120.00299 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00578 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99814 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46960 * 90.00509 * 26 24 22 28 28 H 1.48505 * 109.47019 * 209.99861 * 26 24 22 29 29 H 1.48493 * 109.47421 * 330.00420 * 26 24 22 30 30 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46882 * 300.06431 * 1 2 3 32 32 H 1.08995 * 109.47305 * 60.06342 * 1 2 3 33 33 H 1.09004 * 109.45781 * 58.63092 * 4 2 1 34 34 H 1.08994 * 109.46327 * 298.66868 * 4 2 1 35 35 H 1.09003 * 109.49861 * 301.41699 * 5 4 2 36 36 H 1.09001 * 109.49378 * 181.31675 * 5 4 2 37 37 H 1.08999 * 109.58825 * 185.57557 * 6 5 4 38 38 H 1.09001 * 109.58672 * 65.14805 * 6 5 4 39 39 H 1.09001 * 112.84781 * 50.05753 * 10 8 7 40 40 H 1.09003 * 113.61120 * 334.56153 * 11 10 8 41 41 H 1.09002 * 113.61747 * 105.46589 * 11 10 8 42 42 H 1.09003 * 113.53772 * 270.81109 * 12 11 10 43 43 H 1.09003 * 113.67113 * 139.93387 * 12 11 10 44 44 H 1.09003 * 113.61478 * 254.52684 * 13 10 8 45 45 H 1.08999 * 113.61643 * 25.34680 * 13 10 8 46 46 H 1.09000 * 109.47178 * 50.82528 * 16 14 7 47 47 H 1.08997 * 109.47546 * 170.82757 * 16 14 7 48 48 H 1.00895 * 110.99934 * 303.95311 * 17 16 14 49 49 H 1.09002 * 109.47459 * 299.99480 * 18 17 16 50 50 H 1.08997 * 109.47640 * 60.00632 * 18 17 16 51 51 H 0.97000 * 120.00383 * 0.02562 * 21 19 18 52 52 H 0.96999 * 120.00557 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5709 -0.6939 -1.2666 6 6 4.1060 -1.4254 -0.0316 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3852 2.1775 9 8 3.7831 0.2028 3.1137 10 6 5.7708 -0.6151 2.1391 11 6 6.1888 -2.0227 2.5959 12 6 7.3703 -1.3501 3.3181 13 6 6.5093 -0.0772 3.3760 14 6 2.0418 -0.7287 1.2519 15 1 1.6096 -1.7283 1.2984 16 6 1.6514 0.0608 2.5029 17 7 1.9663 -0.7309 3.6996 18 6 1.6045 -0.0024 4.9229 19 6 1.9408 -0.8443 6.1269 20 8 2.4338 -1.9428 5.9802 21 7 1.6947 -0.3761 7.3664 22 6 2.0010 -1.1417 8.4618 23 1 2.4392 -2.1200 8.3312 24 6 1.7468 -0.6593 9.7397 25 7 2.0400 -1.3932 10.7896 26 14 0.9883 1.0328 9.9655 27 1 -0.4918 0.9131 9.9855 28 1 1.4549 1.6173 11.2485 29 1 1.3985 1.9132 8.8422 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3634 0.5128 -0.8905 33 1 1.6577 -0.2242 -2.1389 34 1 1.6973 -1.7571 -1.2355 35 1 3.9154 0.3402 -1.2546 36 1 3.9334 -1.1883 -2.1678 37 1 5.1903 -1.3228 0.0127 38 1 3.8387 -2.4806 -0.0875 39 1 6.2218 -0.3107 1.1946 40 1 5.4742 -2.4925 3.2719 41 1 6.4909 -2.6758 1.7772 42 1 8.2595 -1.2478 2.6960 43 1 7.5848 -1.7771 4.2978 44 1 7.0699 0.8381 3.1861 45 1 5.8822 -0.0127 4.2652 46 1 2.2083 0.9974 2.5300 47 1 0.5827 0.2740 2.4792 48 1 1.5125 -1.6315 3.6670 49 1 2.1614 0.9336 4.9666 50 1 0.5356 0.2107 4.9162 51 1 1.3007 0.5026 7.4837 52 1 1.8622 -1.0566 11.6817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732531835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:44 Heat of formation + Delta-G solvation = -16.053383 kcal Electronic energy + Delta-G solvation = -31352.498271 eV Core-core repulsion = 27353.870026 eV Total energy + Delta-G solvation = -3998.628245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75640 -38.63163 -38.18634 -36.77984 -35.16609 -33.87928 -33.60301 -32.03883 -31.50139 -28.65403 -26.87836 -26.39273 -25.51589 -25.27189 -23.86747 -22.78293 -21.52815 -20.79047 -19.82120 -19.18455 -18.70968 -18.11412 -17.03076 -16.15024 -15.81795 -15.55155 -15.41855 -15.06746 -14.79393 -14.69913 -14.49133 -13.99945 -13.85690 -13.57761 -13.18873 -12.99394 -12.94712 -12.86017 -12.73209 -12.51593 -12.27265 -12.19427 -12.09188 -11.83828 -11.75456 -11.68667 -11.41495 -11.20630 -11.05015 -10.99133 -10.90922 -10.81486 -10.50804 -10.47156 -10.37148 -10.28289 -9.87092 -9.44248 -8.62205 -8.45454 -8.30968 -8.05221 -7.53284 -6.20419 -3.70694 3.05891 3.11746 3.12148 3.15088 3.22195 3.94273 4.19939 4.26190 4.39998 4.50389 4.63041 4.67591 4.69899 4.81471 4.83605 4.92747 4.95983 5.04970 5.15419 5.20372 5.28691 5.32418 5.36884 5.43631 5.46691 5.51913 5.57323 5.57931 5.66000 5.68800 5.74296 5.84145 5.85056 5.89862 5.92390 5.97325 6.02558 6.05765 6.09688 6.13225 6.22048 6.24019 6.31328 6.58906 6.74805 7.44713 7.69287 7.72996 7.94999 8.27852 8.70624 8.73976 9.07865 9.56075 9.99865 10.93262 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.003388 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.202900 B = 8262.353866 C = 9819.387615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.112 3.888 7 N -0.613 5.613 8 C 0.514 3.486 9 O -0.468 6.468 10 C -0.136 4.136 11 C -0.120 4.120 12 C -0.144 4.144 13 C -0.116 4.116 14 C 0.159 3.841 15 H 0.066 0.934 16 C 0.070 3.930 17 N -0.634 5.634 18 C 0.061 3.939 19 C 0.458 3.542 20 O -0.565 6.565 21 N -0.597 5.597 22 C -0.300 4.300 23 H 0.118 0.882 24 C 0.039 3.961 25 N -0.887 5.887 26 Si 0.879 3.121 27 H -0.272 1.272 28 H -0.278 1.278 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.017 0.983 48 H 0.328 0.672 49 H 0.087 0.913 50 H 0.031 0.969 51 H 0.369 0.631 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 4.553 -27.326 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.012 4.012 7 N -0.349 5.349 8 C 0.301 3.699 9 O -0.338 6.338 10 C -0.158 4.158 11 C -0.157 4.157 12 C -0.181 4.181 13 C -0.154 4.154 14 C 0.055 3.945 15 H 0.084 0.916 16 C -0.059 4.059 17 N -0.266 5.266 18 C -0.071 4.071 19 C 0.244 3.756 20 O -0.446 6.446 21 N -0.237 5.237 22 C -0.428 4.428 23 H 0.135 0.865 24 C -0.163 4.163 25 N -0.528 5.528 26 Si 0.705 3.295 27 H -0.198 1.198 28 H -0.203 1.203 29 H -0.194 1.194 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.035 0.965 48 H 0.147 0.853 49 H 0.106 0.894 50 H 0.049 0.951 51 H 0.202 0.798 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.747 4.313 -26.604 27.210 hybrid contribution -1.557 1.166 0.181 1.954 sum 2.190 5.480 -26.423 27.074 Atomic orbital electron populations 1.21864 0.94577 1.02109 1.02055 1.21578 0.95832 1.00081 0.94574 0.90777 1.21560 0.95222 1.00830 0.97423 1.21940 0.96235 1.01355 0.97873 1.21618 0.98302 0.96879 0.84368 1.47864 1.05544 1.63178 1.18326 1.20260 0.88089 0.79926 0.81648 1.90805 1.72632 1.37792 1.32535 1.22770 0.93065 0.99742 1.00185 1.22822 0.98390 0.94250 1.00280 1.22842 0.96685 0.97446 1.01165 1.22778 0.97606 0.96844 0.98123 1.21267 0.80289 0.98678 0.94244 0.91586 1.22189 0.96246 0.98931 0.88547 1.60304 1.62375 1.04621 0.99297 1.21535 0.97439 0.98016 0.90158 1.19833 0.83913 0.88203 0.83626 1.90533 1.46730 1.21770 1.85587 1.42221 1.57925 1.17606 1.05944 1.19417 1.38777 1.01999 0.82654 0.86459 1.25009 0.98019 0.98089 0.95176 1.69623 1.47752 1.37213 0.98185 0.86680 0.79995 0.84288 0.78511 1.19795 1.20293 1.19447 0.92516 0.92041 0.92531 0.91830 0.91779 0.91622 0.91001 0.89904 0.91909 0.88250 0.88966 0.91589 0.90558 0.90960 0.91805 0.88187 0.88922 0.96542 0.85298 0.89439 0.95089 0.79824 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.97 37.16 0.33 -0.82 16 2 C -0.10 -0.86 2.36 -90.27 -0.21 -1.08 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -0.78 5.16 -26.69 -0.14 -0.92 16 5 C -0.14 -0.89 6.08 -26.61 -0.16 -1.05 16 6 C 0.11 0.90 6.32 -3.71 -0.02 0.88 16 7 N -0.61 -6.91 2.97 -164.97 -0.49 -7.40 16 8 C 0.51 7.16 6.90 -10.99 -0.08 7.08 16 9 O -0.47 -8.17 9.40 5.55 0.05 -8.11 16 10 C -0.14 -1.57 2.82 -90.96 -0.26 -1.83 16 11 C -0.12 -1.39 7.64 -25.83 -0.20 -1.59 16 12 C -0.14 -1.62 8.09 -25.83 -0.21 -1.82 16 13 C -0.12 -1.49 7.40 -25.92 -0.19 -1.68 16 14 C 0.16 1.78 2.55 -67.38 -0.17 1.61 16 15 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 16 C 0.07 0.96 4.22 -3.83 -0.02 0.94 16 17 N -0.63 -11.07 3.53 -115.05 -0.41 -11.48 16 18 C 0.06 1.17 5.78 -4.97 -0.03 1.14 16 19 C 0.46 11.27 7.82 -10.98 -0.09 11.18 16 20 O -0.56 -16.03 15.78 5.54 0.09 -15.95 16 21 N -0.60 -15.23 5.09 -10.96 -0.06 -15.29 16 22 C -0.30 -8.89 10.16 -14.93 -0.15 -9.04 16 23 H 0.12 3.95 7.39 -52.49 -0.39 3.57 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.89 -26.86 13.96 55.50 0.77 -26.09 16 26 Si 0.88 20.39 27.74 -169.99 -4.71 15.67 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.27 -5.79 6.52 56.52 0.37 -5.42 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.52 6.46 -51.93 -0.34 0.18 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.58 5.76 -51.93 -0.30 0.28 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.90 7.03 -51.93 -0.36 0.54 16 40 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 1.66 7.45 -51.93 -0.39 1.27 16 46 H 0.09 1.42 6.32 -51.93 -0.33 1.09 16 47 H 0.02 0.21 6.29 -51.93 -0.33 -0.11 16 48 H 0.33 5.97 8.42 -39.29 -0.33 5.63 16 49 H 0.09 1.65 7.88 -51.93 -0.41 1.25 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.37 8.41 5.76 -40.82 -0.24 8.17 16 52 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -34.44 396.09 -9.38 -43.82 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -8.91 Total: 14.83 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.68 Total: 4.02 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.18 Total: -60.26 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.14 Total: -24.06 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.71 Total: 15.67 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.44 -9.38 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.766 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds