Wall clock time and date at job start Tue Mar 31 2020 22:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.49465 * 2 1 4 4 C 1.53038 * 109.49629 * 239.93353 * 2 1 3 5 5 C 1.53044 * 109.53444 * 178.64716 * 4 2 1 6 6 C 1.53191 * 109.31125 * 61.36795 * 5 4 2 7 7 N 1.46925 * 108.77453 * 305.36359 * 6 5 4 8 8 C 1.34778 * 120.62660 * 233.58441 * 7 6 5 9 9 O 1.21286 * 119.99592 * 174.03202 * 8 7 6 10 10 C 1.50696 * 120.00467 * 354.30689 * 8 7 6 11 11 C 1.53784 * 113.61473 * 278.86308 * 10 8 7 12 12 C 1.53948 * 87.01939 * 220.04658 * 11 10 8 13 13 C 1.53774 * 113.61709 * 181.25436 * 10 8 7 14 14 C 1.46923 * 118.74320 * 53.86003 * 7 6 5 15 15 H 1.09007 * 109.58692 * 65.92319 * 14 7 6 16 16 C 1.52994 * 109.59109 * 186.35213 * 14 7 6 17 17 N 1.46903 * 109.46973 * 290.82832 * 16 14 7 18 18 C 1.46901 * 110.99522 * 179.97438 * 17 16 14 19 19 C 1.50713 * 109.46905 * 179.97438 * 18 17 16 20 20 O 1.21296 * 119.99446 * 0.02562 * 19 18 17 21 21 N 1.34767 * 119.99915 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99980 * 180.02562 * 21 19 18 23 23 H 1.07994 * 119.99726 * 359.97438 * 22 21 19 24 24 C 1.38942 * 120.00299 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00578 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99814 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46960 * 90.00509 * 26 24 22 28 28 H 1.48505 * 109.47019 * 209.99861 * 26 24 22 29 29 H 1.48493 * 109.47421 * 330.00420 * 26 24 22 30 30 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46882 * 300.06431 * 1 2 3 32 32 H 1.08995 * 109.47305 * 60.06342 * 1 2 3 33 33 H 1.09004 * 109.45781 * 58.63092 * 4 2 1 34 34 H 1.08994 * 109.46327 * 298.66868 * 4 2 1 35 35 H 1.09003 * 109.49861 * 301.41699 * 5 4 2 36 36 H 1.09001 * 109.49378 * 181.31675 * 5 4 2 37 37 H 1.08999 * 109.58825 * 185.57557 * 6 5 4 38 38 H 1.09001 * 109.58672 * 65.14805 * 6 5 4 39 39 H 1.09001 * 112.84781 * 50.05753 * 10 8 7 40 40 H 1.09003 * 113.61120 * 334.56153 * 11 10 8 41 41 H 1.09002 * 113.61747 * 105.46589 * 11 10 8 42 42 H 1.09003 * 113.53772 * 270.81109 * 12 11 10 43 43 H 1.09003 * 113.67113 * 139.93387 * 12 11 10 44 44 H 1.09003 * 113.61478 * 254.52684 * 13 10 8 45 45 H 1.08999 * 113.61643 * 25.34680 * 13 10 8 46 46 H 1.09000 * 109.47178 * 50.82528 * 16 14 7 47 47 H 1.08997 * 109.47546 * 170.82757 * 16 14 7 48 48 H 1.00895 * 110.99934 * 303.95311 * 17 16 14 49 49 H 1.09002 * 109.47459 * 299.99480 * 18 17 16 50 50 H 1.08997 * 109.47640 * 60.00632 * 18 17 16 51 51 H 0.97000 * 120.00383 * 0.02562 * 21 19 18 52 52 H 0.96999 * 120.00557 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5709 -0.6939 -1.2666 6 6 4.1060 -1.4254 -0.0316 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3852 2.1775 9 8 3.7831 0.2028 3.1137 10 6 5.7708 -0.6151 2.1391 11 6 6.1888 -2.0227 2.5959 12 6 7.3703 -1.3501 3.3181 13 6 6.5093 -0.0772 3.3760 14 6 2.0418 -0.7287 1.2519 15 1 1.6096 -1.7283 1.2984 16 6 1.6514 0.0608 2.5029 17 7 1.9663 -0.7309 3.6996 18 6 1.6045 -0.0024 4.9229 19 6 1.9408 -0.8443 6.1269 20 8 2.4338 -1.9428 5.9802 21 7 1.6947 -0.3761 7.3664 22 6 2.0010 -1.1417 8.4618 23 1 2.4392 -2.1200 8.3312 24 6 1.7468 -0.6593 9.7397 25 7 2.0400 -1.3932 10.7896 26 14 0.9883 1.0328 9.9655 27 1 -0.4918 0.9131 9.9855 28 1 1.4549 1.6173 11.2485 29 1 1.3985 1.9132 8.8422 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3634 0.5128 -0.8905 33 1 1.6577 -0.2242 -2.1389 34 1 1.6973 -1.7571 -1.2355 35 1 3.9154 0.3402 -1.2546 36 1 3.9334 -1.1883 -2.1678 37 1 5.1903 -1.3228 0.0127 38 1 3.8387 -2.4806 -0.0875 39 1 6.2218 -0.3107 1.1946 40 1 5.4742 -2.4925 3.2719 41 1 6.4909 -2.6758 1.7772 42 1 8.2595 -1.2478 2.6960 43 1 7.5848 -1.7771 4.2978 44 1 7.0699 0.8381 3.1861 45 1 5.8822 -0.0127 4.2652 46 1 2.2083 0.9974 2.5300 47 1 0.5827 0.2740 2.4792 48 1 1.5125 -1.6315 3.6670 49 1 2.1614 0.9336 4.9666 50 1 0.5356 0.2107 4.9162 51 1 1.3007 0.5026 7.4837 52 1 1.8622 -1.0566 11.6817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732531835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:41 Heat of formation + Delta-G solvation = -40.088723 kcal Electronic energy + Delta-G solvation = -31353.540522 eV Core-core repulsion = 27353.870026 eV Total energy + Delta-G solvation = -3999.670496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70595 -40.25078 -39.45687 -37.77052 -36.53271 -35.83070 -34.57652 -33.76332 -32.88830 -29.79064 -28.21784 -27.10951 -26.69151 -26.49543 -25.30973 -23.93864 -22.35573 -21.61042 -21.32437 -20.67504 -20.20319 -19.62877 -18.00995 -17.71711 -17.11030 -16.83529 -16.68165 -16.36363 -15.97905 -15.62402 -15.59101 -15.50167 -15.16900 -14.77212 -14.54549 -14.27752 -14.21623 -14.02872 -13.86208 -13.64198 -13.46929 -13.37662 -13.14279 -13.11046 -12.90752 -12.75456 -12.69544 -12.48367 -12.44550 -12.00957 -11.91442 -11.83055 -11.65862 -11.53782 -11.53181 -11.32536 -11.24723 -11.17944 -10.40983 -10.26215 -9.69602 -9.37584 -8.82186 -8.43584 -6.03803 1.27450 1.31741 1.40985 1.95637 2.03007 2.20227 2.24252 2.77355 3.12909 3.46927 3.62736 3.66013 3.77272 3.86815 3.96016 3.97316 3.99560 4.13126 4.15996 4.21920 4.31940 4.36319 4.39983 4.53462 4.60350 4.62995 4.69129 4.75476 4.77610 4.81130 4.88085 4.89546 4.94737 4.96140 5.04796 5.07954 5.10630 5.19816 5.24679 5.27075 5.29493 5.36734 5.51113 5.54903 5.59162 5.86199 5.89794 6.16764 6.57059 6.60592 6.76187 6.86251 7.38188 7.68465 7.95501 8.74431 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.003388 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.202900 B = 8262.353866 C = 9819.387615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.129 4.129 6 C 0.104 3.896 7 N -0.611 5.611 8 C 0.502 3.498 9 O -0.514 6.514 10 C -0.125 4.125 11 C -0.117 4.117 12 C -0.135 4.135 13 C -0.125 4.125 14 C 0.158 3.842 15 H 0.060 0.940 16 C 0.078 3.922 17 N -0.646 5.646 18 C 0.079 3.921 19 C 0.455 3.545 20 O -0.611 6.611 21 N -0.594 5.594 22 C -0.327 4.327 23 H 0.054 0.946 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.254 1.254 28 H -0.271 1.271 29 H -0.239 1.239 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.047 0.953 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.031 0.969 48 H 0.320 0.680 49 H 0.093 0.907 50 H 0.062 0.938 51 H 0.387 0.613 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 6.907 -30.771 31.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.167 4.167 6 C -0.018 4.018 7 N -0.346 5.346 8 C 0.290 3.710 9 O -0.388 6.388 10 C -0.145 4.145 11 C -0.155 4.155 12 C -0.172 4.172 13 C -0.163 4.163 14 C 0.054 3.946 15 H 0.078 0.922 16 C -0.051 4.051 17 N -0.278 5.278 18 C -0.054 4.054 19 C 0.243 3.757 20 O -0.495 6.495 21 N -0.236 5.236 22 C -0.457 4.457 23 H 0.072 0.928 24 C -0.212 4.212 25 N -0.575 5.575 26 Si 0.784 3.216 27 H -0.178 1.178 28 H -0.196 1.196 29 H -0.163 1.163 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.065 0.935 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.138 0.862 49 H 0.111 0.889 50 H 0.080 0.920 51 H 0.222 0.778 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.281 6.661 -30.110 31.012 hybrid contribution -1.358 0.296 1.242 1.864 sum 1.923 6.957 -28.867 29.756 Atomic orbital electron populations 1.21851 0.93875 1.02302 1.02366 1.21506 0.96333 0.99444 0.93894 0.91401 1.21568 0.95619 1.00812 0.96843 1.21910 0.95777 1.01242 0.97781 1.21902 0.99181 0.97128 0.83572 1.47966 1.05516 1.62313 1.18763 1.20755 0.89291 0.79437 0.81542 1.90775 1.73613 1.40109 1.34303 1.22803 0.91670 0.99082 1.00989 1.22708 0.97533 0.94774 1.00459 1.22879 0.97581 0.95874 1.00908 1.22695 0.97914 0.98635 0.97088 1.21296 0.80555 0.98316 0.94433 0.92195 1.22141 0.96783 0.98167 0.87973 1.60314 1.62923 1.04622 0.99965 1.21362 0.99151 0.96691 0.88165 1.20959 0.81995 0.88025 0.84766 1.90505 1.48381 1.24206 1.86429 1.42051 1.58332 1.17994 1.05246 1.18999 1.40739 1.00867 0.85049 0.92810 1.26076 0.97679 1.03724 0.93762 1.69797 1.48501 1.40092 0.99130 0.85371 0.79482 0.77172 0.79534 1.17825 1.19577 1.16297 0.92374 0.92957 0.90993 0.90279 0.91604 0.91813 0.88615 0.88420 0.91514 0.84426 0.93459 0.88313 0.86938 0.92848 0.90130 0.93177 0.90343 0.95098 0.86236 0.88914 0.91994 0.77760 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.97 71.98 0.65 -1.31 16 2 C -0.09 -1.39 2.36 -10.57 -0.02 -1.41 16 3 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.11 -1.19 5.16 30.62 0.16 -1.03 16 5 C -0.13 -1.23 6.08 30.67 0.19 -1.04 16 6 C 0.10 1.40 6.32 86.36 0.55 1.95 16 7 N -0.61 -13.18 2.97 -794.23 -2.36 -15.53 16 8 C 0.50 14.05 6.90 87.66 0.60 14.65 16 9 O -0.51 -18.68 9.40 -3.05 -0.03 -18.71 16 10 C -0.12 -2.75 2.82 -11.02 -0.03 -2.78 16 11 C -0.12 -2.68 7.64 31.18 0.24 -2.44 16 12 C -0.14 -2.97 8.09 31.18 0.25 -2.72 16 13 C -0.13 -3.31 7.40 31.12 0.23 -3.08 16 14 C 0.16 3.42 2.55 45.12 0.12 3.53 16 15 H 0.06 1.38 8.12 -2.38 -0.02 1.36 16 16 C 0.08 2.11 4.22 86.30 0.36 2.48 16 17 N -0.65 -23.25 3.53 -517.92 -1.83 -25.08 16 18 C 0.08 3.03 5.78 85.56 0.49 3.53 16 19 C 0.45 23.29 7.82 87.66 0.69 23.98 16 20 O -0.61 -37.16 15.78 -3.08 -0.05 -37.21 16 21 N -0.59 -31.11 5.09 -306.98 -1.56 -32.68 16 22 C -0.33 -20.50 10.16 84.04 0.85 -19.64 16 23 H 0.05 3.97 7.39 -2.91 -0.02 3.95 16 24 C -0.01 -0.82 5.50 84.92 0.47 -0.35 16 25 N -0.93 -58.61 13.96 21.66 0.30 -58.31 16 26 Si 0.96 41.59 27.74 68.60 1.90 43.49 16 27 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.24 -9.11 6.52 99.48 0.65 -8.46 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.79 6.46 -2.39 -0.02 0.78 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 1.02 5.76 -2.39 -0.01 1.00 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.14 2.00 7.03 -2.39 -0.02 1.98 16 40 H 0.05 1.51 8.09 -2.39 -0.02 1.49 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.83 7.45 -2.39 -0.02 1.81 16 46 H 0.08 2.41 6.32 -2.39 -0.02 2.39 16 47 H 0.03 0.75 6.29 -2.39 -0.02 0.74 16 48 H 0.32 12.12 8.42 -89.70 -0.75 11.36 16 49 H 0.09 3.51 7.88 -2.39 -0.02 3.49 16 50 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.39 17.24 5.76 -92.71 -0.53 16.71 16 52 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -83.60 396.09 1.74 -81.85 By element: Atomic # 1 Polarization: 48.29 SS G_CDS: -0.42 Total: 47.87 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 5.79 Total: 14.30 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -5.44 Total: -131.60 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -0.08 Total: -55.92 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.90 Total: 43.49 kcal Total: -83.60 1.74 -81.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.764 kcal (2) G-P(sol) polarization free energy of solvation -83.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds