Wall clock time and date at job start Tue Mar 31 2020 21:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 10 10 O 1.21272 * 120.00282 * 239.99629 * 9 7 6 11 11 N 1.34784 * 119.99691 * 60.00038 * 9 7 6 12 12 C 1.46496 * 119.99560 * 179.97438 * 11 9 7 13 13 C 1.50706 * 109.47106 * 179.97438 * 12 11 9 14 14 C 1.30997 * 119.99829 * 125.00056 * 13 12 11 15 15 C 1.50696 * 119.99992 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.47312 * 124.99991 * 15 14 13 17 17 C 1.46899 * 111.00262 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47424 * 179.97438 * 17 16 15 19 19 O 1.21295 * 119.99967 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00009 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00110 * 179.97438 * 20 18 17 22 22 H 1.08007 * 120.00055 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00373 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99684 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00241 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46951 * 60.00007 * 25 23 21 27 27 H 1.48499 * 109.47020 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46817 * 300.00052 * 25 23 21 29 29 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 30 30 H 1.08996 * 109.47261 * 300.00539 * 1 2 3 31 31 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 32 32 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 34 34 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 35 35 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 36 36 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 37 37 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 39 39 H 0.96998 * 120.00249 * 359.97438 * 11 9 7 40 40 H 1.09000 * 109.47574 * 300.00129 * 12 11 9 41 41 H 1.09001 * 109.47459 * 59.99638 * 12 11 9 42 42 H 1.07997 * 120.00069 * 305.00392 * 13 12 11 43 43 H 1.08001 * 120.00210 * 359.97438 * 14 13 12 44 44 H 1.09006 * 109.47111 * 244.99713 * 15 14 13 45 45 H 1.09001 * 109.47040 * 4.99671 * 15 14 13 46 46 H 1.00900 * 111.00090 * 56.04547 * 16 15 14 47 47 H 1.09002 * 109.47025 * 300.00270 * 17 16 15 48 48 H 1.09002 * 109.47066 * 59.99286 * 17 16 15 49 49 H 0.97000 * 119.99861 * 359.97438 * 20 18 17 50 50 H 0.96998 * 119.99812 * 179.97438 * 24 23 21 51 51 H 1.08992 * 109.47554 * 59.99639 * 29 7 6 52 52 H 1.09004 * 109.47108 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9331 0.3055 1.2498 9 6 4.0708 -1.4332 2.4801 10 8 3.2821 -1.8937 3.2780 11 7 5.3958 -1.5572 2.6938 12 6 5.8831 -2.2480 3.8903 13 6 7.3901 -2.2496 3.8905 14 6 8.0454 -1.7706 4.9187 15 6 9.5524 -1.7717 4.9188 16 7 10.0431 -0.4082 5.1592 17 6 11.5116 -0.3706 5.1654 18 6 11.9770 1.0411 5.4136 19 8 11.1652 1.9288 5.5695 20 7 13.2952 1.3174 5.4625 21 6 13.7186 2.6017 5.6877 22 1 12.9958 3.3921 5.8265 23 6 15.0777 2.8864 5.7386 24 7 15.9572 1.9247 5.5703 25 14 15.6545 4.6364 6.0463 26 1 15.1408 5.1033 7.3591 27 1 17.1390 4.6739 6.0545 28 1 15.1423 5.5227 4.9706 29 6 2.0395 -0.7216 1.2493 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6765 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.9336 0.3056 -1.2488 36 1 3.9332 -1.2354 -2.1391 37 1 5.1695 -1.4434 0.0008 38 1 3.7158 -2.4709 0.0002 39 1 6.0266 -1.1892 2.0555 40 1 5.5198 -1.7338 4.7801 41 1 5.5189 -3.2753 3.8904 42 1 7.9298 -2.6457 3.0431 43 1 7.5057 -1.3740 5.7660 44 1 9.9152 -2.4325 5.7062 45 1 9.9155 -2.1237 3.9532 46 1 9.6679 -0.0350 6.0182 47 1 11.8884 -1.0217 5.9542 48 1 11.8880 -0.7126 4.2013 49 1 13.9444 0.6074 5.3382 50 1 16.9059 2.1235 5.6054 51 1 1.6757 -1.7490 1.2491 52 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732895585.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:32 Heat of formation + Delta-G solvation = -90.918017 kcal Electronic energy + Delta-G solvation = -27645.295568 eV Core-core repulsion = 23643.420949 eV Total energy + Delta-G solvation = -4001.874619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.51697 -38.41637 -38.29350 -36.72116 -35.24011 -33.93740 -33.38725 -32.55073 -31.37211 -31.21486 -28.52964 -26.80371 -26.16962 -24.50553 -23.53730 -22.42739 -22.09338 -20.70998 -20.18288 -19.81650 -19.13187 -17.89603 -17.29516 -16.49013 -16.15473 -15.77799 -15.48033 -15.40427 -14.91617 -14.72517 -14.55517 -14.38433 -14.34587 -13.93851 -13.81527 -13.64736 -13.61670 -13.21872 -12.89076 -12.77457 -12.52561 -12.28675 -12.18671 -11.92636 -11.78309 -11.59305 -11.55288 -11.52315 -11.38145 -11.20578 -11.03259 -10.90958 -10.82915 -10.47922 -10.45378 -10.22949 -10.02340 -9.55508 -9.51442 -9.17934 -8.48870 -8.07852 -7.97639 -6.43193 -3.84157 1.83350 2.42512 3.11782 3.19174 3.24942 3.29427 3.88930 4.10623 4.22330 4.24036 4.27882 4.34017 4.64485 4.68050 4.69553 4.79252 4.85257 4.92709 5.01897 5.08710 5.10539 5.16465 5.22282 5.26421 5.28848 5.33633 5.36180 5.45399 5.46344 5.49164 5.57758 5.60832 5.67455 5.70780 5.77180 5.78900 5.81670 5.86296 5.93894 5.95885 6.09069 6.15723 6.23503 6.42094 6.57949 7.14698 7.27147 7.53594 7.59998 8.00003 8.04406 8.59566 9.16195 9.52389 10.03897 10.74423 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.001469 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.213798 B =19055.810116 C =20042.047043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.107 4.107 8 H 0.098 0.902 9 C 0.516 3.484 10 O -0.543 6.543 11 N -0.725 5.725 12 C 0.152 3.848 13 C -0.184 4.184 14 C -0.111 4.111 15 C 0.082 3.918 16 N -0.665 5.665 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.093 4.093 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.403 0.597 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.350 0.650 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.069 0.931 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 -11.263 -12.333 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.148 4.148 7 C -0.128 4.128 8 H 0.116 0.884 9 C 0.303 3.697 10 O -0.420 6.420 11 N -0.377 5.377 12 C 0.029 3.971 13 C -0.203 4.203 14 C -0.130 4.130 15 C -0.047 4.047 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.131 4.131 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.170 0.830 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.583 -10.806 -12.285 29.530 hybrid contribution 1.481 0.121 0.674 1.632 sum -23.102 -10.684 -11.611 27.976 Atomic orbital electron populations 1.21812 0.95043 1.01891 1.01693 1.21166 0.95677 0.99666 0.94685 0.91082 1.21630 0.95366 1.00834 0.97553 1.21531 0.95816 1.00970 0.97313 1.21532 1.00504 0.99640 0.93112 1.21375 0.98040 1.00705 0.92729 0.88362 1.20716 0.82036 0.79541 0.87432 1.90693 1.55309 1.48690 1.47315 1.46061 1.07142 1.58887 1.25628 1.20294 0.91209 0.97445 0.88104 1.22736 0.94417 1.03518 0.99621 1.22879 0.95697 0.96090 0.98346 1.21086 0.91731 0.90538 1.01325 1.60116 1.07126 1.18874 1.43666 1.21689 0.88328 0.96675 1.01549 1.19792 0.83388 0.89609 0.84680 1.90526 1.53315 1.47724 1.55188 1.41851 1.04998 1.10436 1.62661 1.19665 0.91621 0.85919 1.45858 0.87960 1.25260 0.95583 0.99690 0.97328 1.69603 1.02233 1.32538 1.49929 0.85911 0.77229 0.81873 0.79164 1.19914 1.20962 1.19875 1.21398 0.92189 1.01758 0.97729 0.92570 0.92706 0.92667 0.91904 0.91902 0.91574 0.91538 0.91369 0.91393 0.76202 0.91168 0.90982 0.86583 0.86962 0.94302 0.90506 0.83028 0.93786 0.89559 0.77448 0.91809 0.91224 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.50 16 2 C -0.09 -0.57 2.72 -90.62 -0.25 -0.82 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.63 5.20 -26.73 -0.14 -0.77 16 5 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 6 C -0.11 -0.66 5.10 -26.73 -0.14 -0.79 16 7 C -0.11 -0.80 2.53 -91.77 -0.23 -1.04 16 8 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 9 C 0.52 5.32 7.15 -10.98 -0.08 5.24 16 10 O -0.54 -7.67 15.98 5.56 0.09 -7.58 16 11 N -0.73 -6.39 5.44 -61.47 -0.33 -6.73 16 12 C 0.15 1.43 6.11 -5.19 -0.03 1.39 16 13 C -0.18 -1.64 9.24 -36.02 -0.33 -1.97 16 14 C -0.11 -1.13 9.38 -36.03 -0.34 -1.47 16 15 C 0.08 0.95 6.12 -4.98 -0.03 0.92 16 16 N -0.67 -10.50 6.11 -116.34 -0.71 -11.21 16 17 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 18 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 19 O -0.58 -15.85 15.78 5.54 0.09 -15.76 16 20 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 21 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 25 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C -0.09 -0.73 3.77 -26.73 -0.10 -0.83 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.35 7.56 -51.93 -0.39 -0.05 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.40 2.80 7.88 -40.82 -0.32 2.48 16 40 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.12 0.92 7.84 -52.49 -0.41 0.51 16 43 H 0.11 1.13 7.84 -52.49 -0.41 0.72 16 44 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 46 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 49 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 52 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 422.83 15.07 6.37 6.37 Total: -1.00 -32.96 422.83 -9.97 -42.93 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -9.27 Total: 12.29 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.84 Total: 1.65 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.38 Total: -55.83 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.18 Total: -23.34 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.96 -9.97 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732895585.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.991 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds