Wall clock time and date at job start Tue Mar 31 2020 21:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 10 10 O 1.21272 * 120.00282 * 239.99629 * 9 7 6 11 11 N 1.34784 * 119.99691 * 60.00038 * 9 7 6 12 12 C 1.46496 * 119.99560 * 179.97438 * 11 9 7 13 13 C 1.50706 * 109.47106 * 179.97438 * 12 11 9 14 14 C 1.30997 * 119.99829 * 125.00056 * 13 12 11 15 15 C 1.50696 * 119.99992 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.47312 * 124.99991 * 15 14 13 17 17 C 1.46899 * 111.00262 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47424 * 179.97438 * 17 16 15 19 19 O 1.21295 * 119.99967 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00009 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00110 * 179.97438 * 20 18 17 22 22 H 1.08007 * 120.00055 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00373 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99684 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00241 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46951 * 60.00007 * 25 23 21 27 27 H 1.48499 * 109.47020 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46817 * 300.00052 * 25 23 21 29 29 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 30 30 H 1.08996 * 109.47261 * 300.00539 * 1 2 3 31 31 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 32 32 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 34 34 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 35 35 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 36 36 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 37 37 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 39 39 H 0.96998 * 120.00249 * 359.97438 * 11 9 7 40 40 H 1.09000 * 109.47574 * 300.00129 * 12 11 9 41 41 H 1.09001 * 109.47459 * 59.99638 * 12 11 9 42 42 H 1.07997 * 120.00069 * 305.00392 * 13 12 11 43 43 H 1.08001 * 120.00210 * 359.97438 * 14 13 12 44 44 H 1.09006 * 109.47111 * 244.99713 * 15 14 13 45 45 H 1.09001 * 109.47040 * 4.99671 * 15 14 13 46 46 H 1.00900 * 111.00090 * 56.04547 * 16 15 14 47 47 H 1.09002 * 109.47025 * 300.00270 * 17 16 15 48 48 H 1.09002 * 109.47066 * 59.99286 * 17 16 15 49 49 H 0.97000 * 119.99861 * 359.97438 * 20 18 17 50 50 H 0.96998 * 119.99812 * 179.97438 * 24 23 21 51 51 H 1.08992 * 109.47554 * 59.99639 * 29 7 6 52 52 H 1.09004 * 109.47108 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9331 0.3055 1.2498 9 6 4.0708 -1.4332 2.4801 10 8 3.2821 -1.8937 3.2780 11 7 5.3958 -1.5572 2.6938 12 6 5.8831 -2.2480 3.8903 13 6 7.3901 -2.2496 3.8905 14 6 8.0454 -1.7706 4.9187 15 6 9.5524 -1.7717 4.9188 16 7 10.0431 -0.4082 5.1592 17 6 11.5116 -0.3706 5.1654 18 6 11.9770 1.0411 5.4136 19 8 11.1652 1.9288 5.5695 20 7 13.2952 1.3174 5.4625 21 6 13.7186 2.6017 5.6877 22 1 12.9958 3.3921 5.8265 23 6 15.0777 2.8864 5.7386 24 7 15.9572 1.9247 5.5703 25 14 15.6545 4.6364 6.0463 26 1 15.1408 5.1033 7.3591 27 1 17.1390 4.6739 6.0545 28 1 15.1423 5.5227 4.9706 29 6 2.0395 -0.7216 1.2493 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6765 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.9336 0.3056 -1.2488 36 1 3.9332 -1.2354 -2.1391 37 1 5.1695 -1.4434 0.0008 38 1 3.7158 -2.4709 0.0002 39 1 6.0266 -1.1892 2.0555 40 1 5.5198 -1.7338 4.7801 41 1 5.5189 -3.2753 3.8904 42 1 7.9298 -2.6457 3.0431 43 1 7.5057 -1.3740 5.7660 44 1 9.9152 -2.4325 5.7062 45 1 9.9155 -2.1237 3.9532 46 1 9.6679 -0.0350 6.0182 47 1 11.8884 -1.0217 5.9542 48 1 11.8880 -0.7126 4.2013 49 1 13.9444 0.6074 5.3382 50 1 16.9059 2.1235 5.6054 51 1 1.6757 -1.7490 1.2491 52 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732895585.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:30 Heat of formation + Delta-G solvation = -113.714432 kcal Electronic energy + Delta-G solvation = -27646.284095 eV Core-core repulsion = 23643.420949 eV Total energy + Delta-G solvation = -4002.863146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26124 -40.15676 -38.98712 -37.74300 -36.34914 -35.81496 -34.16672 -33.37233 -33.17391 -31.92490 -29.65373 -27.69018 -27.18067 -25.96509 -24.47679 -23.33667 -22.60236 -21.50793 -21.16941 -20.68477 -20.39773 -19.86018 -18.03619 -17.88214 -17.16214 -16.97781 -16.48440 -16.44609 -16.05445 -15.96241 -15.47927 -15.33507 -15.24046 -15.13375 -14.95971 -14.73197 -14.44863 -14.10200 -14.03226 -13.57511 -13.49193 -13.28802 -13.20491 -13.04072 -12.90453 -12.72014 -12.71844 -12.43057 -12.40915 -12.12550 -12.12454 -12.03496 -11.85868 -11.50248 -11.47530 -11.35294 -10.98825 -10.78394 -10.38033 -10.35284 -10.02206 -9.99490 -9.27369 -8.46400 -5.95308 1.04569 1.40309 1.42478 1.53272 1.61251 2.05504 2.29899 2.38215 3.01293 3.20926 3.58183 3.62477 3.70634 3.75644 3.77182 4.08257 4.15429 4.17271 4.27686 4.30540 4.39302 4.43543 4.47290 4.52791 4.54391 4.56318 4.57851 4.65671 4.67692 4.69901 4.79111 4.85090 4.89615 4.98226 5.09999 5.15815 5.18894 5.30130 5.34644 5.35945 5.39498 5.40925 5.43966 5.60708 5.65870 5.76478 5.89786 6.09911 6.36907 6.53701 6.60388 7.12719 7.22593 7.56368 8.11841 8.70618 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.001469 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.213798 B =19055.810116 C =20042.047043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.106 4.106 7 C -0.102 4.102 8 H 0.111 0.889 9 C 0.512 3.488 10 O -0.587 6.587 11 N -0.716 5.716 12 C 0.152 3.848 13 C -0.162 4.162 14 C -0.127 4.127 15 C 0.087 3.913 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 C -0.090 4.090 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.415 0.585 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.344 0.656 47 H 0.068 0.932 48 H 0.107 0.893 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.054 0.946 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.964 -11.652 -13.838 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.144 4.144 7 C -0.123 4.123 8 H 0.129 0.871 9 C 0.300 3.700 10 O -0.468 6.468 11 N -0.368 5.368 12 C 0.029 3.971 13 C -0.181 4.181 14 C -0.146 4.146 15 C -0.041 4.041 16 N -0.314 5.314 17 C -0.067 4.067 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.467 4.467 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.128 4.128 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.126 0.874 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.162 0.838 47 H 0.086 0.914 48 H 0.125 0.875 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.073 0.927 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.868 -11.225 -13.817 29.775 hybrid contribution 1.196 0.187 1.146 1.667 sum -22.672 -11.038 -12.671 28.220 Atomic orbital electron populations 1.21816 0.94860 1.01803 1.01977 1.21146 0.95866 0.99675 0.94135 0.90645 1.21627 0.95710 1.00580 0.97353 1.21533 0.95453 1.01287 0.97112 1.21528 1.01266 0.99040 0.92533 1.21395 0.97629 1.01140 0.92142 0.87111 1.21246 0.82048 0.78981 0.87718 1.90673 1.56428 1.50706 1.48960 1.46006 1.07018 1.58249 1.25520 1.20244 0.91651 0.97336 0.87864 1.22761 0.93828 1.02053 0.99479 1.22805 0.95187 0.97619 0.98995 1.21126 0.92242 0.88389 1.02356 1.60127 1.06040 1.21770 1.43459 1.21551 0.89525 0.92303 1.03364 1.20918 0.82379 0.91890 0.82471 1.90494 1.54209 1.49937 1.56521 1.41919 1.05923 1.09799 1.63283 1.19642 0.92004 0.86806 1.48219 0.90367 1.26021 0.95124 1.03530 0.96410 1.69660 1.02612 1.34052 1.49653 0.84997 0.77318 0.77207 0.78862 1.19771 1.19434 1.19741 1.21350 0.92658 1.00826 0.97992 0.93056 0.91641 0.92967 0.92320 0.90911 0.91007 0.90534 0.90031 0.92169 0.74847 0.92576 0.90953 0.84795 0.87356 0.93009 0.89230 0.83799 0.91399 0.87485 0.76904 0.91269 0.92747 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.19 71.98 0.66 -0.96 16 2 C -0.09 -1.03 2.72 -10.80 -0.03 -1.06 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.12 -1.08 5.20 30.60 0.16 -0.92 16 5 C -0.12 -0.97 5.92 30.60 0.18 -0.79 16 6 C -0.11 -1.09 5.10 30.59 0.16 -0.94 16 7 C -0.10 -1.46 2.53 -11.54 -0.03 -1.49 16 8 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 9 C 0.51 10.49 7.15 87.66 0.63 11.12 16 10 O -0.59 -17.15 15.98 -3.01 -0.05 -17.20 16 11 N -0.72 -11.87 5.44 -466.78 -2.54 -14.41 16 12 C 0.15 2.72 6.11 85.64 0.52 3.25 16 13 C -0.16 -2.56 9.24 25.65 0.24 -2.32 16 14 C -0.13 -2.39 9.38 25.65 0.24 -2.15 16 15 C 0.09 1.80 6.12 85.56 0.52 2.32 16 16 N -0.68 -20.51 6.11 -521.98 -3.19 -23.70 16 17 C 0.06 2.13 6.17 85.56 0.53 2.65 16 18 C 0.44 20.49 7.82 87.66 0.69 21.17 16 19 O -0.62 -34.56 15.78 -3.08 -0.05 -34.61 16 20 N -0.57 -29.05 5.29 -306.98 -1.62 -30.67 16 21 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -49.05 13.05 21.66 0.28 -48.76 16 25 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 C -0.09 -1.44 3.77 30.59 0.12 -1.33 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.63 7.56 -2.39 -0.02 0.61 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.41 4.94 7.88 -92.71 -0.73 4.20 16 40 H 0.06 1.18 7.79 -2.39 -0.02 1.16 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.13 1.68 7.84 -2.91 -0.02 1.66 16 43 H 0.11 2.12 7.84 -2.91 -0.02 2.10 16 44 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.09 1.64 7.79 -2.39 -0.02 1.62 16 46 H 0.34 11.05 8.43 -89.69 -0.76 10.29 16 47 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 49 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 50 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 51 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 52 H 0.05 0.99 8.10 -2.38 -0.02 0.97 16 Total: -1.00 -72.17 422.83 -0.58 -72.75 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -1.30 Total: 41.81 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.86 Total: 10.18 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -7.07 Total: -117.54 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.10 Total: -51.80 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.17 -0.58 -72.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732895585.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.964 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds