Wall clock time and date at job start Tue Mar 31 2020 20:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 110.05520 * 2 1 4 4 C 1.54260 * 110.03170 * 238.57887 * 2 1 3 5 5 C 1.54885 * 104.19897 * 264.32944 * 4 2 1 6 6 C 1.54898 * 102.74561 * 322.05510 * 5 4 2 7 7 C 1.53881 * 110.03072 * 121.41340 * 2 1 3 8 8 H 1.09004 * 110.02862 * 359.95287 * 7 2 1 9 9 C 1.52999 * 110.03026 * 238.57054 * 7 2 1 10 10 C 1.50698 * 109.46649 * 175.00318 * 9 7 2 11 11 O 1.21279 * 120.00235 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99806 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00203 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47276 * 187.42797 * 13 12 10 15 15 N 1.46896 * 115.54479 * 270.32356 * 14 13 12 16 16 C 1.46905 * 111.00010 * 295.04183 * 15 14 13 17 17 C 1.50701 * 109.47117 * 187.07573 * 16 15 14 18 18 O 1.21298 * 119.99804 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00074 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99929 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00506 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99521 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00383 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99438 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46937 * 90.00548 * 24 22 20 26 26 H 1.48503 * 109.46918 * 210.00118 * 24 22 20 27 27 H 1.48491 * 109.47186 * 330.00346 * 24 22 20 28 28 C 1.52999 * 117.49975 * 124.65512 * 14 13 12 29 29 C 1.52999 * 117.50008 * 55.98878 * 14 13 12 30 30 H 1.09007 * 109.46941 * 298.58499 * 1 2 3 31 31 H 1.08996 * 109.46959 * 58.58200 * 1 2 3 32 32 H 1.09002 * 109.47082 * 178.59165 * 1 2 3 33 33 H 1.09003 * 110.48558 * 23.00443 * 4 2 1 34 34 H 1.08992 * 110.48474 * 145.51315 * 4 2 1 35 35 H 1.08994 * 110.75764 * 80.36938 * 5 4 2 36 36 H 1.09003 * 110.75643 * 203.74625 * 5 4 2 37 37 H 1.08994 * 110.48388 * 279.26644 * 6 5 4 38 38 H 1.08998 * 110.48250 * 156.61949 * 6 5 4 39 39 H 1.08993 * 109.47661 * 55.00049 * 9 7 2 40 40 H 1.08997 * 109.46704 * 294.99884 * 9 7 2 41 41 H 0.97009 * 120.00045 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47174 * 307.42274 * 13 12 10 43 43 H 1.08997 * 109.47362 * 67.42733 * 13 12 10 44 44 H 1.00893 * 111.00286 * 59.00177 * 15 14 13 45 45 H 1.08998 * 109.46888 * 307.07226 * 16 15 14 46 46 H 1.09000 * 109.46849 * 67.07951 * 16 15 14 47 47 H 0.96997 * 120.00460 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00004 * 179.97438 * 23 22 20 49 49 H 1.08999 * 117.49763 * 359.97438 * 28 14 13 50 50 H 1.08994 * 117.49727 * 145.02329 * 28 14 13 51 51 H 1.08991 * 117.49853 * 214.98030 * 29 14 13 52 52 H 1.09004 * 117.49603 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3280 -2.1902 -0.7190 6 6 2.8875 -1.9406 0.7037 7 6 2.0572 -0.7535 1.2338 8 1 1.2229 -1.1185 1.8330 9 6 2.9409 0.1704 2.0742 10 6 3.3497 -0.5394 3.3391 11 8 2.9712 -1.6725 3.5481 12 7 4.1361 0.0850 4.2381 13 6 4.5331 -0.6048 5.4680 14 6 5.2599 0.3756 6.3909 15 7 6.7153 0.4562 6.2093 16 6 7.3609 -0.8158 6.5604 17 6 8.8578 -0.6447 6.5298 18 8 9.3395 0.4312 6.2441 19 7 9.6613 -1.6871 6.8199 20 6 11.0232 -1.5315 6.7915 21 1 11.4522 -0.5738 6.5364 22 6 11.8515 -2.6062 7.0911 23 7 11.3297 -3.7716 7.4011 24 14 13.7071 -2.3944 7.0518 25 1 14.1856 -1.9718 8.3926 26 1 14.3447 -3.6836 6.6823 27 1 14.0660 -1.3594 6.0493 28 6 4.7143 0.5467 7.8100 29 6 4.5239 1.6602 6.7770 30 1 -0.3633 0.4917 0.9025 31 1 -0.3633 0.5357 -0.8770 32 1 -0.3633 -1.0274 -0.0253 33 1 1.3061 -0.7697 -2.0254 34 1 2.9798 -0.2987 -1.5979 35 1 1.4031 -2.7651 -0.6750 36 1 3.0675 -2.6932 -1.3421 37 1 3.9440 -1.6767 0.6572 38 1 2.7401 -2.8196 1.3311 39 1 2.3852 1.0732 2.3275 40 1 3.8305 0.4392 1.5046 41 1 4.4386 0.9914 4.0711 42 1 3.6460 -0.9885 5.9720 43 1 5.1979 -1.4328 5.2219 44 1 6.9475 0.7315 5.2669 45 1 7.0500 -1.1170 7.5608 46 1 7.0681 -1.5821 5.8427 47 1 9.2762 -2.5474 7.0487 48 1 11.9080 -4.5219 7.6099 49 1 3.8375 -0.0389 8.0861 50 1 5.4354 0.7195 8.6089 51 1 5.1197 2.5650 6.8967 52 1 3.5221 1.8070 6.3732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733242790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:19 Heat of formation + Delta-G solvation = -72.450300 kcal Electronic energy + Delta-G solvation = -29021.490635 eV Core-core repulsion = 25020.416837 eV Total energy + Delta-G solvation = -4001.073799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.32580 -39.08282 -38.29423 -37.64891 -34.22767 -33.97669 -32.78018 -31.90990 -31.28920 -31.18574 -27.83661 -26.65434 -26.14667 -24.45405 -24.09502 -22.51585 -21.01707 -20.39064 -19.72137 -19.55604 -19.19569 -17.87394 -17.34069 -16.44798 -16.26547 -15.82912 -15.66100 -15.23983 -15.18602 -14.91595 -14.53311 -14.08432 -14.05315 -13.92990 -13.58038 -13.46914 -13.38313 -13.16305 -12.81930 -12.55195 -12.47116 -12.27294 -12.13573 -11.58670 -11.53784 -11.42451 -11.20185 -11.17724 -11.04029 -10.93756 -10.89719 -10.76104 -10.73409 -10.62346 -10.39566 -10.29392 -10.20743 -9.73148 -9.50766 -9.19779 -8.56857 -8.12607 -7.96278 -6.41370 -3.82366 2.53066 2.93197 3.17949 3.26500 3.32165 3.69234 3.90331 3.99856 4.23828 4.24469 4.29959 4.39266 4.46721 4.71054 4.83856 4.89234 4.93118 4.94829 5.07700 5.11858 5.19062 5.23756 5.24569 5.28404 5.34794 5.44597 5.48656 5.53344 5.54258 5.60090 5.61704 5.63280 5.68751 5.79695 5.84417 5.86606 5.88061 5.92223 5.97422 6.07034 6.11516 6.14852 6.25765 6.26540 6.28465 7.14104 7.34793 7.54101 7.55284 8.06135 8.10072 8.61323 9.17960 9.54433 10.05805 10.76290 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012709 B = 0.002102 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.693647 B =13318.882376 C =14773.643557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.114 4.114 7 C -0.071 4.071 8 H 0.081 0.919 9 C -0.135 4.135 10 C 0.510 3.490 11 O -0.538 6.538 12 N -0.727 5.727 13 C 0.127 3.873 14 C 0.014 3.986 15 N -0.625 5.625 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.149 4.149 29 C -0.154 4.154 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.401 0.599 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.350 0.650 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.095 0.905 50 H 0.105 0.895 51 H 0.104 0.896 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.777 6.960 -11.646 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.164 4.164 6 C -0.152 4.152 7 C -0.090 4.090 8 H 0.099 0.901 9 C -0.175 4.175 10 C 0.297 3.703 11 O -0.415 6.415 12 N -0.380 5.380 13 C 0.001 3.999 14 C -0.079 4.079 15 N -0.256 5.256 16 C -0.081 4.081 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.187 4.187 29 C -0.191 4.191 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.236 0.764 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.170 0.830 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.114 0.886 50 H 0.124 0.876 51 H 0.123 0.877 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.478 6.955 -11.019 25.982 hybrid contribution 0.742 -0.677 -0.577 1.158 sum -21.736 6.278 -11.595 25.423 Atomic orbital electron populations 1.21876 0.94961 1.01841 1.01426 1.21824 0.95762 0.99272 0.94499 0.91024 1.22428 1.00701 0.95763 0.96941 1.22513 1.00752 0.96557 0.96589 1.22395 0.98805 0.98457 0.95540 1.21619 0.97825 0.94598 0.94985 0.90091 1.21862 1.01670 0.99717 0.94269 1.20752 0.77933 0.86809 0.84854 1.90701 1.54855 1.18376 1.77549 1.46074 1.52199 1.18809 1.20891 1.21427 0.99239 0.94690 0.84522 1.21704 0.88673 0.99393 0.98124 1.59933 1.02926 1.30404 1.32352 1.21670 0.94375 0.90485 1.01610 1.19769 0.87362 0.85493 0.84688 1.90522 1.76178 1.26488 1.53513 1.41860 1.06534 1.11154 1.60462 1.19695 0.80755 0.98414 1.44033 0.87931 1.25272 1.00763 0.94803 0.97154 1.69613 1.36401 1.01316 1.46899 0.85854 0.82084 0.77607 0.78716 1.20388 1.20933 1.19438 1.23092 1.02252 1.01597 0.91750 1.23048 1.00313 0.93119 1.02668 0.92753 0.92819 0.92566 0.91786 0.91696 0.91671 0.91755 0.92028 0.90818 0.89046 0.88813 0.76441 0.90706 0.91099 0.82982 0.89393 0.93681 0.77455 0.91856 0.88646 0.87621 0.87720 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.83 37.16 0.33 -0.56 16 2 C -0.10 -0.64 3.16 -89.50 -0.28 -0.92 16 3 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 4 C -0.12 -0.82 6.37 -25.08 -0.16 -0.98 16 5 C -0.13 -1.00 6.91 -24.74 -0.17 -1.17 16 6 C -0.11 -1.10 5.43 -25.07 -0.14 -1.23 16 7 C -0.07 -0.60 2.20 -89.50 -0.20 -0.80 16 8 H 0.08 0.80 7.45 -51.93 -0.39 0.41 16 9 C -0.14 -1.04 4.83 -27.88 -0.13 -1.17 16 10 C 0.51 5.58 7.61 -10.99 -0.08 5.50 16 11 O -0.54 -7.94 14.80 5.56 0.08 -7.85 16 12 N -0.73 -7.14 5.39 -60.29 -0.33 -7.46 16 13 C 0.13 1.47 5.78 -4.04 -0.02 1.44 16 14 C 0.01 0.16 1.79 -131.60 -0.24 -0.07 16 15 N -0.63 -9.63 6.12 -101.21 -0.62 -10.25 16 16 C 0.05 0.89 5.88 -4.97 -0.03 0.87 16 17 C 0.44 10.43 7.84 -10.99 -0.09 10.34 16 18 O -0.58 -15.79 15.93 5.54 0.09 -15.70 16 19 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C -0.15 -1.60 10.05 -26.69 -0.27 -1.86 16 29 C -0.15 -1.49 9.80 -26.69 -0.26 -1.75 16 30 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.40 7.84 -51.93 -0.41 -0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.62 7.76 -51.93 -0.40 0.21 16 38 H 0.07 0.85 7.66 -51.93 -0.40 0.45 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.63 8.00 -51.93 -0.42 0.21 16 41 H 0.40 3.12 8.29 -40.82 -0.34 2.78 16 42 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 43 H 0.07 0.96 6.58 -51.93 -0.34 0.62 16 44 H 0.35 5.47 8.77 -39.30 -0.34 5.13 16 45 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 46 H 0.05 0.74 6.85 -51.93 -0.36 0.39 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 50 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 51 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 52 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 418.68 15.07 6.31 6.31 Total: -1.00 -32.62 418.68 -9.89 -42.52 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -9.09 Total: 15.15 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.98 Total: -0.43 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.28 Total: -56.14 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.62 -9.89 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733242790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.934 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds