Wall clock time and date at job start Tue Mar 31 2020 20:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 110.05520 * 2 1 4 4 C 1.54260 * 110.03170 * 238.57887 * 2 1 3 5 5 C 1.54885 * 104.19897 * 264.32944 * 4 2 1 6 6 C 1.54898 * 102.74561 * 322.05510 * 5 4 2 7 7 C 1.53881 * 110.03072 * 121.41340 * 2 1 3 8 8 H 1.09004 * 110.02862 * 359.95287 * 7 2 1 9 9 C 1.52999 * 110.03026 * 238.57054 * 7 2 1 10 10 C 1.50698 * 109.46649 * 175.00318 * 9 7 2 11 11 O 1.21279 * 120.00235 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99806 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00203 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47276 * 187.42797 * 13 12 10 15 15 N 1.46896 * 115.54479 * 270.32356 * 14 13 12 16 16 C 1.46905 * 111.00010 * 295.04183 * 15 14 13 17 17 C 1.50701 * 109.47117 * 187.07573 * 16 15 14 18 18 O 1.21298 * 119.99804 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00074 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99929 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00506 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99521 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00383 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99438 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46937 * 90.00548 * 24 22 20 26 26 H 1.48503 * 109.46918 * 210.00118 * 24 22 20 27 27 H 1.48491 * 109.47186 * 330.00346 * 24 22 20 28 28 C 1.52999 * 117.49975 * 124.65512 * 14 13 12 29 29 C 1.52999 * 117.50008 * 55.98878 * 14 13 12 30 30 H 1.09007 * 109.46941 * 298.58499 * 1 2 3 31 31 H 1.08996 * 109.46959 * 58.58200 * 1 2 3 32 32 H 1.09002 * 109.47082 * 178.59165 * 1 2 3 33 33 H 1.09003 * 110.48558 * 23.00443 * 4 2 1 34 34 H 1.08992 * 110.48474 * 145.51315 * 4 2 1 35 35 H 1.08994 * 110.75764 * 80.36938 * 5 4 2 36 36 H 1.09003 * 110.75643 * 203.74625 * 5 4 2 37 37 H 1.08994 * 110.48388 * 279.26644 * 6 5 4 38 38 H 1.08998 * 110.48250 * 156.61949 * 6 5 4 39 39 H 1.08993 * 109.47661 * 55.00049 * 9 7 2 40 40 H 1.08997 * 109.46704 * 294.99884 * 9 7 2 41 41 H 0.97009 * 120.00045 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47174 * 307.42274 * 13 12 10 43 43 H 1.08997 * 109.47362 * 67.42733 * 13 12 10 44 44 H 1.00893 * 111.00286 * 59.00177 * 15 14 13 45 45 H 1.08998 * 109.46888 * 307.07226 * 16 15 14 46 46 H 1.09000 * 109.46849 * 67.07951 * 16 15 14 47 47 H 0.96997 * 120.00460 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00004 * 179.97438 * 23 22 20 49 49 H 1.08999 * 117.49763 * 359.97438 * 28 14 13 50 50 H 1.08994 * 117.49727 * 145.02329 * 28 14 13 51 51 H 1.08991 * 117.49853 * 214.98030 * 29 14 13 52 52 H 1.09004 * 117.49603 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3280 -2.1902 -0.7190 6 6 2.8875 -1.9406 0.7037 7 6 2.0572 -0.7535 1.2338 8 1 1.2229 -1.1185 1.8330 9 6 2.9409 0.1704 2.0742 10 6 3.3497 -0.5394 3.3391 11 8 2.9712 -1.6725 3.5481 12 7 4.1361 0.0850 4.2381 13 6 4.5331 -0.6048 5.4680 14 6 5.2599 0.3756 6.3909 15 7 6.7153 0.4562 6.2093 16 6 7.3609 -0.8158 6.5604 17 6 8.8578 -0.6447 6.5298 18 8 9.3395 0.4312 6.2441 19 7 9.6613 -1.6871 6.8199 20 6 11.0232 -1.5315 6.7915 21 1 11.4522 -0.5738 6.5364 22 6 11.8515 -2.6062 7.0911 23 7 11.3297 -3.7716 7.4011 24 14 13.7071 -2.3944 7.0518 25 1 14.1856 -1.9718 8.3926 26 1 14.3447 -3.6836 6.6823 27 1 14.0660 -1.3594 6.0493 28 6 4.7143 0.5467 7.8100 29 6 4.5239 1.6602 6.7770 30 1 -0.3633 0.4917 0.9025 31 1 -0.3633 0.5357 -0.8770 32 1 -0.3633 -1.0274 -0.0253 33 1 1.3061 -0.7697 -2.0254 34 1 2.9798 -0.2987 -1.5979 35 1 1.4031 -2.7651 -0.6750 36 1 3.0675 -2.6932 -1.3421 37 1 3.9440 -1.6767 0.6572 38 1 2.7401 -2.8196 1.3311 39 1 2.3852 1.0732 2.3275 40 1 3.8305 0.4392 1.5046 41 1 4.4386 0.9914 4.0711 42 1 3.6460 -0.9885 5.9720 43 1 5.1979 -1.4328 5.2219 44 1 6.9475 0.7315 5.2669 45 1 7.0500 -1.1170 7.5608 46 1 7.0681 -1.5821 5.8427 47 1 9.2762 -2.5474 7.0487 48 1 11.9080 -4.5219 7.6099 49 1 3.8375 -0.0389 8.0861 50 1 5.4354 0.7195 8.6089 51 1 5.1197 2.5650 6.8967 52 1 3.5221 1.8070 6.3732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733242790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:15 Heat of formation + Delta-G solvation = -95.194736 kcal Electronic energy + Delta-G solvation = -29022.476908 eV Core-core repulsion = 25020.416837 eV Total energy + Delta-G solvation = -4002.060072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.17907 -40.31496 -39.51709 -38.77858 -36.03302 -35.11168 -34.10938 -33.22856 -32.57426 -31.87021 -28.76097 -28.18430 -26.88329 -25.92168 -25.08869 -23.38107 -21.74666 -21.24853 -21.07739 -20.58094 -20.19262 -19.90935 -18.28383 -17.75640 -17.22068 -16.87888 -16.75808 -16.48481 -16.30066 -16.00570 -15.85767 -15.69812 -15.13389 -15.10177 -14.62552 -14.37440 -14.20416 -14.13029 -13.88423 -13.64079 -13.49356 -13.39382 -13.18882 -13.02938 -12.85852 -12.77412 -12.43638 -12.31072 -12.13329 -11.85511 -11.77518 -11.61959 -11.54032 -11.50688 -11.46045 -11.43973 -11.28380 -11.19705 -10.62843 -10.37849 -10.10417 -10.03765 -9.48554 -8.48152 -5.97395 1.36946 1.40540 1.53607 1.68354 2.02334 2.11474 2.26863 2.68701 2.96216 3.18579 3.43357 3.56552 3.61012 3.69233 3.76971 3.94865 4.02292 4.09356 4.24264 4.31104 4.32434 4.39067 4.46563 4.52066 4.55866 4.58918 4.63510 4.67536 4.71814 4.79717 4.80694 4.83522 4.84279 4.96116 5.04549 5.06735 5.10973 5.24932 5.26277 5.32476 5.34075 5.37933 5.39115 5.43992 5.50168 5.63051 5.83790 6.05062 6.32903 6.56778 6.57477 7.10334 7.28412 7.53580 8.08398 8.69225 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012709 B = 0.002102 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.693647 B =13318.882376 C =14773.643557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.088 0.912 4 C -0.118 4.118 5 C -0.126 4.126 6 C -0.117 4.117 7 C -0.070 4.070 8 H 0.063 0.937 9 C -0.129 4.129 10 C 0.506 3.494 11 O -0.582 6.582 12 N -0.717 5.717 13 C 0.136 3.864 14 C 0.005 3.995 15 N -0.635 5.635 16 C 0.068 3.932 17 C 0.439 3.561 18 O -0.620 6.620 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.151 4.151 29 C -0.130 4.130 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.414 0.586 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.348 0.652 45 H 0.102 0.898 46 H 0.058 0.942 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.113 0.887 50 H 0.092 0.908 51 H 0.101 0.899 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.784 8.376 -12.284 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.106 0.894 4 C -0.155 4.155 5 C -0.164 4.164 6 C -0.154 4.154 7 C -0.089 4.089 8 H 0.081 0.919 9 C -0.168 4.168 10 C 0.294 3.706 11 O -0.462 6.462 12 N -0.370 5.370 13 C 0.010 3.990 14 C -0.087 4.087 15 N -0.265 5.265 16 C -0.064 4.064 17 C 0.227 3.773 18 O -0.506 6.506 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.189 4.189 29 C -0.167 4.167 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.250 0.750 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.167 0.833 45 H 0.120 0.880 46 H 0.076 0.924 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.131 0.869 50 H 0.111 0.889 51 H 0.119 0.881 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.505 8.389 -11.650 27.543 hybrid contribution 1.009 -1.117 -0.360 1.548 sum -22.496 7.272 -12.010 26.518 Atomic orbital electron populations 1.21873 0.94542 1.01533 1.02098 1.21804 0.96072 0.99702 0.93248 0.89401 1.22431 1.01273 0.94610 0.97235 1.22511 1.00578 0.97716 0.95579 1.22359 0.98795 0.98047 0.96234 1.21581 0.97147 0.94460 0.95672 0.91870 1.21906 1.02453 1.00019 0.92439 1.21381 0.77232 0.86355 0.85644 1.90691 1.56551 1.20404 1.78545 1.46001 1.51616 1.19203 1.20170 1.21196 0.98606 0.94081 0.85113 1.21665 0.86529 1.01385 0.99157 1.59902 1.05316 1.29053 1.32255 1.21448 0.89972 0.92148 1.02855 1.20795 0.89728 0.84305 0.82498 1.90487 1.77629 1.27819 1.54672 1.41947 1.06167 1.11814 1.61175 1.19676 0.82327 0.98141 1.46153 0.90166 1.26087 1.05045 0.94229 0.96116 1.69680 1.38010 1.01785 1.46714 0.84904 0.76595 0.77875 0.78819 1.19567 1.19588 1.19638 1.23177 1.02454 1.02416 0.90836 1.23111 1.00852 0.91890 1.00888 0.92497 0.91695 0.93447 0.90811 0.91196 0.91827 0.91685 0.92685 0.93769 0.86154 0.87280 0.74967 0.90690 0.93460 0.83311 0.88022 0.92409 0.77116 0.91295 0.86877 0.88939 0.88063 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.83 71.98 0.64 -0.86 16 2 C -0.09 -1.02 3.16 -10.07 -0.03 -1.05 16 3 H 0.09 0.75 7.67 -2.39 -0.02 0.73 16 4 C -0.12 -1.40 6.37 31.67 0.20 -1.20 16 5 C -0.13 -1.96 6.91 31.89 0.22 -1.74 16 6 C -0.12 -2.28 5.43 31.67 0.17 -2.11 16 7 C -0.07 -1.11 2.20 -10.07 -0.02 -1.13 16 8 H 0.06 1.24 7.45 -2.38 -0.02 1.22 16 9 C -0.13 -1.71 4.83 29.85 0.14 -1.57 16 10 C 0.51 10.60 7.61 87.66 0.67 11.27 16 11 O -0.58 -17.45 14.80 -3.03 -0.04 -17.49 16 12 N -0.72 -12.98 5.39 -463.06 -2.50 -15.47 16 13 C 0.14 3.01 5.78 86.38 0.50 3.51 16 14 C 0.01 0.11 1.79 3.53 0.01 0.12 16 15 N -0.63 -19.15 6.12 -474.14 -2.90 -22.05 16 16 C 0.07 2.38 5.88 85.56 0.50 2.89 16 17 C 0.44 21.15 7.84 87.66 0.69 21.84 16 18 O -0.62 -34.35 15.93 -3.08 -0.05 -34.40 16 19 N -0.57 -30.00 5.29 -306.98 -1.62 -31.62 16 20 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 21 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 22 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 24 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 C -0.15 -2.94 10.05 30.62 0.31 -2.64 16 29 C -0.13 -2.17 9.80 30.62 0.30 -1.87 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.75 7.84 -2.39 -0.02 0.73 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.12 7.76 -2.39 -0.02 1.10 16 38 H 0.04 1.10 7.66 -2.39 -0.02 1.08 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 1.17 8.00 -2.39 -0.02 1.15 16 41 H 0.41 5.44 8.29 -92.70 -0.77 4.67 16 42 H 0.07 1.68 7.83 -2.39 -0.02 1.67 16 43 H 0.05 1.28 6.58 -2.39 -0.02 1.26 16 44 H 0.35 10.70 8.77 -89.70 -0.79 9.91 16 45 H 0.10 3.30 8.06 -2.39 -0.02 3.28 16 46 H 0.06 1.90 6.85 -2.39 -0.02 1.88 16 47 H 0.40 19.81 7.90 -92.71 -0.73 19.07 16 48 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 49 H 0.11 1.81 8.03 -2.39 -0.02 1.79 16 50 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -72.41 418.68 -0.59 -73.00 By element: Atomic # 1 Polarization: 47.50 SS G_CDS: -1.35 Total: 46.15 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 5.57 Total: 6.76 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -6.74 Total: -119.37 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.09 Total: -51.89 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.41 -0.59 -73.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733242790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.199 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds