Wall clock time and date at job start Tue Mar 31 2020 20:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.01481 * 2 1 4 4 C 1.53872 * 110.07344 * 121.41971 * 2 1 3 5 5 C 1.54268 * 106.59890 * 119.30934 * 4 2 1 6 6 C 1.54886 * 104.19610 * 23.60686 * 5 4 2 7 7 C 1.54265 * 110.03375 * 238.61128 * 2 1 3 8 8 H 1.09002 * 110.48331 * 335.73157 * 7 2 1 9 9 C 1.53001 * 110.48766 * 98.24156 * 7 2 1 10 10 C 1.50696 * 109.47117 * 183.16318 * 9 7 2 11 11 O 1.21279 * 120.00156 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00172 * 180.02562 * 10 9 7 13 13 C 1.46501 * 120.00608 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47395 * 175.58886 * 13 12 10 15 15 N 1.46904 * 115.54970 * 279.61649 * 14 13 12 16 16 C 1.46905 * 110.99736 * 294.62771 * 15 14 13 17 17 C 1.50702 * 109.47163 * 179.59531 * 16 15 14 18 18 O 1.21288 * 119.99711 * 359.97438 * 17 16 15 19 19 N 1.34770 * 119.99984 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00139 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00038 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00404 * 180.02562 * 20 19 17 23 23 N 1.31406 * 119.99783 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00148 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47259 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47074 * 119.99943 * 24 22 20 27 27 H 1.48505 * 109.47288 * 240.00132 * 24 22 20 28 28 C 1.52995 * 117.50070 * 133.90842 * 14 13 12 29 29 C 1.52994 * 117.50116 * 65.28435 * 14 13 12 30 30 H 1.09004 * 109.46966 * 181.39032 * 1 2 3 31 31 H 1.09001 * 109.47209 * 301.38802 * 1 2 3 32 32 H 1.08993 * 109.47255 * 61.38912 * 1 2 3 33 33 H 1.09002 * 110.03099 * 238.59323 * 4 2 1 34 34 H 1.09000 * 110.03329 * 0.02562 * 4 2 1 35 35 H 1.09000 * 110.48441 * 142.28998 * 5 4 2 36 36 H 1.09007 * 110.48347 * 264.79626 * 5 4 2 37 37 H 1.08995 * 110.75603 * 203.74371 * 6 5 4 38 38 H 1.09007 * 110.75566 * 80.37253 * 6 5 4 39 39 H 1.09001 * 109.47089 * 303.16540 * 9 7 2 40 40 H 1.08995 * 109.46978 * 63.15960 * 9 7 2 41 41 H 0.97007 * 120.00020 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.46782 * 295.58639 * 13 12 10 43 43 H 1.09003 * 109.46912 * 55.58795 * 13 12 10 44 44 H 1.00896 * 111.00435 * 170.67816 * 15 14 13 45 45 H 1.08998 * 109.47237 * 299.59421 * 16 15 14 46 46 H 1.09005 * 109.47076 * 59.59432 * 16 15 14 47 47 H 0.97000 * 120.00404 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99980 * 180.02562 * 23 22 20 49 49 H 1.09005 * 117.49541 * 359.97438 * 28 14 13 50 50 H 1.09000 * 117.49868 * 145.01678 * 28 14 13 51 51 H 1.09006 * 117.50217 * 214.97986 * 29 14 13 52 52 H 1.09002 * 117.49850 * 0.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7534 1.2333 5 6 2.8892 -1.9398 0.7026 6 6 3.3144 -1.4994 -0.7202 7 6 2.0585 -0.7549 -1.2372 8 1 1.3146 -1.4659 -1.5967 9 6 2.4350 0.2306 -2.3454 10 6 2.8741 -0.5325 -3.5684 11 8 2.8844 -1.7452 -3.5552 12 7 3.2553 0.1325 -4.6769 13 6 3.6827 -0.6093 -5.8657 14 6 3.9543 0.3712 -7.0084 15 7 2.7672 0.8440 -7.7332 16 6 2.1134 -0.2597 -8.4492 17 6 0.8971 0.2605 -9.1711 18 8 0.6035 1.4349 -9.0961 19 7 0.1356 -0.5793 -9.8999 20 6 -0.9712 -0.1062 -10.5562 21 1 -1.2327 0.9395 -10.4895 22 6 -1.7566 -0.9721 -11.3073 23 7 -1.4388 -2.2446 -11.3881 24 14 -3.2651 -0.3276 -12.2009 25 1 -3.4034 1.1297 -11.9511 26 1 -3.1168 -0.5675 -13.6589 27 1 -4.4739 -1.0325 -11.7036 28 6 5.2433 0.1818 -7.8104 29 6 5.1142 1.3538 -6.8355 30 1 -0.3633 -1.0274 0.0249 31 1 -0.3634 0.5352 0.8773 32 1 -0.3633 0.4921 -0.9021 33 1 2.6876 -0.0949 1.8319 34 1 1.2245 -1.1199 1.8323 35 1 3.7658 -2.1024 1.3297 36 1 2.2801 -2.8428 0.6585 37 1 3.5336 -2.3662 -1.3435 38 1 4.1713 -0.8270 -0.6764 39 1 1.5706 0.8470 -2.5926 40 1 3.2499 0.8683 -2.0030 41 1 3.2467 1.1025 -4.6876 42 1 4.5929 -1.1648 -5.6396 43 1 2.8970 -1.3042 -6.1623 44 1 3.0041 1.5944 -8.3646 45 1 2.8092 -0.6872 -9.1711 46 1 1.8122 -1.0274 -7.7363 47 1 0.3702 -1.5186 -9.9596 48 1 -1.9869 -2.8490 -11.9127 49 1 5.8981 -0.6412 -7.5237 50 1 5.2107 0.4077 -8.8763 51 1 4.9967 2.3509 -7.2599 52 1 5.6841 1.3014 -5.9078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733242791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:29 Heat of formation + Delta-G solvation = -73.579731 kcal Electronic energy + Delta-G solvation = -29129.004591 eV Core-core repulsion = 25127.881817 eV Total energy + Delta-G solvation = -4001.122775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.16929 -39.10717 -38.24131 -37.69202 -34.20499 -33.96054 -32.62460 -31.83379 -31.37552 -31.19620 -27.79313 -26.57991 -25.96345 -24.38157 -24.08913 -22.59148 -20.96110 -20.24567 -19.75472 -19.60652 -19.24559 -17.90326 -17.07676 -16.49108 -16.21278 -15.71433 -15.54462 -15.21115 -15.02817 -14.85907 -14.49256 -14.08925 -14.00990 -13.93762 -13.69137 -13.39288 -13.25980 -13.05993 -12.79708 -12.51083 -12.34765 -12.20014 -11.95483 -11.72662 -11.65704 -11.49091 -11.18458 -11.14886 -11.09870 -10.91128 -10.86631 -10.76987 -10.68057 -10.58498 -10.35500 -10.32747 -10.22145 -9.71821 -9.53229 -9.02111 -8.45711 -8.10126 -7.97416 -6.42564 -3.83571 2.68362 3.04188 3.15723 3.26380 3.33388 3.65743 3.88089 4.04980 4.24751 4.32669 4.39991 4.47170 4.48561 4.63571 4.78844 4.89156 4.98666 5.09674 5.10140 5.11402 5.24367 5.25444 5.33228 5.37033 5.42088 5.46056 5.48654 5.55465 5.56238 5.62659 5.69679 5.71784 5.75022 5.79646 5.84476 5.88633 5.93761 5.95451 5.98185 6.00258 6.11304 6.20320 6.24510 6.34023 6.44257 7.10994 7.50480 7.54493 7.56286 8.04882 8.26348 8.59461 9.16572 9.52795 10.03638 10.75156 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.002293 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.424522 B =12209.569330 C =13905.106281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.117 4.117 7 C -0.071 4.071 8 H 0.084 0.916 9 C -0.134 4.134 10 C 0.511 3.489 11 O -0.542 6.542 12 N -0.719 5.719 13 C 0.167 3.833 14 C 0.038 3.962 15 N -0.626 5.626 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.585 6.585 19 N -0.562 5.562 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.900 5.900 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.207 4.207 29 C -0.166 4.166 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.404 0.596 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.354 0.646 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.393 0.607 48 H 0.271 0.729 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.100 0.900 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.328 3.033 20.566 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.154 4.154 7 C -0.090 4.090 8 H 0.103 0.897 9 C -0.174 4.174 10 C 0.298 3.702 11 O -0.420 6.420 12 N -0.371 5.371 13 C 0.043 3.957 14 C -0.055 4.055 15 N -0.257 5.257 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.541 5.541 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.247 4.247 29 C -0.204 4.204 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.238 0.762 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.174 0.826 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.118 0.882 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.573 2.754 21.049 24.673 hybrid contribution -0.010 0.039 -1.440 1.440 sum 12.563 2.794 19.609 23.456 Atomic orbital electron populations 1.21900 0.94934 1.01921 1.01619 1.21816 0.95765 0.99301 0.94387 0.91033 1.22217 0.99348 0.97092 0.97129 1.22352 0.99316 0.98033 0.96624 1.22547 0.96710 1.00581 0.95588 1.21824 0.98217 0.96188 0.92803 0.89748 1.21746 1.02946 0.99175 0.93516 1.20684 0.76787 0.88370 0.84352 1.90686 1.53623 1.14053 1.83602 1.45913 1.67758 1.10669 1.12737 1.20677 1.00278 0.92439 0.82283 1.21876 0.85200 1.00396 0.98055 1.59862 1.23028 1.09788 1.33040 1.21685 0.95644 0.93989 0.96869 1.19753 0.86247 0.87242 0.84156 1.90520 1.73348 1.16927 1.66133 1.41862 1.24221 1.10624 1.43146 1.19745 1.01696 0.96461 1.24977 0.87865 1.25277 0.99610 0.95089 0.98003 1.69620 1.40020 1.03140 1.41368 0.85798 0.80672 0.79133 0.78727 1.19217 1.20758 1.20698 1.23634 1.01959 1.00983 0.98167 1.23136 1.00288 0.95400 1.01566 0.92547 0.92864 0.92514 0.92117 0.91866 0.92053 0.91729 0.90418 0.92152 0.88774 0.89105 0.76158 0.91283 0.90443 0.82585 0.93478 0.89459 0.77420 0.91876 0.88438 0.88426 0.88194 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.84 37.16 0.33 -0.81 16 2 C -0.09 -0.73 3.07 -89.50 -0.27 -1.01 16 3 H 0.07 0.50 7.84 -51.93 -0.41 0.10 16 4 C -0.12 -0.88 6.46 -25.61 -0.17 -1.05 16 5 C -0.13 -1.02 6.83 -25.07 -0.17 -1.19 16 6 C -0.12 -1.10 5.70 -24.74 -0.14 -1.24 16 7 C -0.07 -0.67 1.98 -88.96 -0.18 -0.85 16 8 H 0.08 0.97 7.67 -51.93 -0.40 0.58 16 9 C -0.13 -1.19 5.06 -27.88 -0.14 -1.33 16 10 C 0.51 6.20 7.63 -10.99 -0.08 6.11 16 11 O -0.54 -8.50 14.62 5.56 0.08 -8.42 16 12 N -0.72 -7.97 5.52 -60.30 -0.33 -8.31 16 13 C 0.17 2.03 5.68 -4.04 -0.02 2.00 16 14 C 0.04 0.44 1.81 -131.61 -0.24 0.20 16 15 N -0.63 -9.61 6.29 -101.22 -0.64 -10.25 16 16 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 17 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 18 O -0.58 -15.74 15.79 5.55 0.09 -15.66 16 19 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 24 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C -0.21 -2.07 10.07 -26.74 -0.27 -2.34 16 29 C -0.17 -1.53 9.89 -26.74 -0.26 -1.79 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.90 7.18 -51.93 -0.37 0.52 16 38 H 0.06 0.52 8.00 -51.92 -0.42 0.11 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 41 H 0.40 3.82 8.41 -40.82 -0.34 3.47 16 42 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 43 H 0.08 1.12 6.52 -51.93 -0.34 0.78 16 44 H 0.35 5.58 8.32 -39.29 -0.33 5.25 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.50 6.62 -51.93 -0.34 1.15 16 47 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 50 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 418.69 15.07 6.31 6.31 Total: -1.00 -32.36 418.69 -9.90 -42.26 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -9.08 Total: 16.48 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.98 Total: -0.17 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.30 Total: -56.92 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.17 Total: -24.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.36 -9.90 -42.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733242791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.322 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds