Wall clock time and date at job start Tue Mar 31 2020 22:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 115.54825 * 2 1 4 4 C 1.52995 * 117.49647 * 145.66654 * 2 1 3 5 5 C 1.52993 * 117.49987 * 214.32848 * 2 1 3 6 6 H 1.09003 * 117.49719 * 359.97438 * 5 2 1 7 7 C 1.50700 * 117.50382 * 145.02019 * 5 2 1 8 8 O 1.21282 * 119.99461 * 0.02562 * 7 5 2 9 9 N 1.34769 * 120.00301 * 179.97438 * 7 5 2 10 10 C 1.46504 * 120.00197 * 174.65743 * 9 7 5 11 11 C 1.52992 * 109.47236 * 303.90073 * 10 9 7 12 12 N 1.46900 * 109.47066 * 305.46951 * 11 10 9 13 13 C 1.46910 * 110.99964 * 174.69614 * 12 11 10 14 14 C 1.50699 * 109.46820 * 179.97438 * 13 12 11 15 15 O 1.21292 * 120.00246 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99588 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99636 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00162 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99782 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00232 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00096 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46962 * 90.00208 * 21 19 17 23 23 H 1.48504 * 109.47206 * 209.99918 * 21 19 17 24 24 H 1.48497 * 109.47187 * 330.00355 * 21 19 17 25 25 C 1.52997 * 109.47243 * 183.89397 * 10 9 7 26 26 C 1.52992 * 109.47557 * 300.00480 * 25 10 9 27 27 C 1.52999 * 109.47208 * 299.99785 * 26 25 10 28 28 C 1.53003 * 109.46935 * 60.00274 * 27 26 25 29 29 C 1.53001 * 109.46744 * 299.99525 * 28 27 26 30 30 H 1.09006 * 109.47145 * 325.58498 * 1 2 3 31 31 H 1.08995 * 109.47440 * 205.58792 * 1 2 3 32 32 H 1.09000 * 109.46990 * 85.58410 * 1 2 3 33 33 H 1.08999 * 117.49954 * 214.97730 * 4 2 1 34 34 H 1.09002 * 117.50222 * 359.97438 * 4 2 1 35 35 H 0.97001 * 120.00092 * 354.66596 * 9 7 5 36 36 H 1.09007 * 109.47215 * 65.46494 * 11 10 9 37 37 H 1.09003 * 109.47325 * 185.46514 * 11 10 9 38 38 H 1.00900 * 110.99857 * 298.64546 * 12 11 10 39 39 H 1.08999 * 109.46516 * 299.99809 * 13 12 11 40 40 H 1.09000 * 109.47031 * 59.99913 * 13 12 11 41 41 H 0.96997 * 119.99730 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00007 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.46491 * 60.00865 * 25 10 9 44 44 H 1.08997 * 109.46859 * 179.97438 * 25 10 9 45 45 H 1.09001 * 109.47343 * 179.97438 * 26 25 10 46 46 H 1.09007 * 109.47203 * 59.99998 * 26 25 10 47 47 H 1.08999 * 109.47318 * 300.00456 * 27 26 25 48 48 H 1.08998 * 109.47025 * 179.97438 * 27 26 25 49 49 H 1.09003 * 109.47032 * 180.02562 * 28 27 26 50 50 H 1.08994 * 109.47354 * 59.99679 * 28 27 26 51 51 H 1.08997 * 109.48015 * 300.00432 * 29 28 27 52 52 H 1.09005 * 109.47281 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7653 6 1 1.6112 -1.8583 -1.2685 7 6 3.5293 -0.7807 -1.4611 8 8 3.9720 0.3468 -1.4007 9 7 4.1940 -1.7297 -2.1494 10 6 5.3868 -1.3742 -2.9221 11 6 5.0373 -0.2681 -3.9197 12 7 3.8997 -0.6949 -4.7452 13 6 3.4549 0.3902 -5.6300 14 6 2.2897 -0.0840 -6.4598 15 8 1.8707 -1.2145 -6.3269 16 7 1.7126 0.7484 -7.3489 17 6 0.6530 0.3169 -8.1042 18 1 0.2804 -0.6900 -7.9864 19 6 0.0583 1.1749 -9.0212 20 7 0.5119 2.3998 -9.1649 21 14 -1.3860 0.5871 -10.0498 22 1 -2.6541 0.8754 -9.3328 23 1 -1.3840 1.2942 -11.3557 24 1 -1.2682 -0.8754 -10.2786 25 6 5.8891 -2.6046 -3.6800 26 6 6.2386 -3.7107 -2.6824 27 6 7.3317 -3.2150 -1.7336 28 6 6.8294 -1.9845 -0.9755 29 6 6.4800 -0.8784 -1.9732 30 1 -0.3634 0.8478 0.5808 31 1 -0.3634 -0.9268 0.4438 32 1 -0.3633 0.0791 -1.0246 33 1 3.1715 -0.8747 1.2686 34 1 1.6112 -1.8577 1.2694 35 1 3.8825 -2.6483 -2.1334 36 1 4.7724 0.6398 -3.3776 37 1 5.8973 -0.0712 -4.5599 38 1 4.1278 -1.5228 -5.2750 39 1 3.1488 1.2465 -5.0291 40 1 4.2739 0.6818 -6.2875 41 1 2.0475 1.6526 -7.4549 42 1 0.0970 2.9987 -9.8053 43 1 5.1103 -2.9578 -4.3560 44 1 6.7763 -2.3399 -4.2552 45 1 6.5960 -4.5875 -3.2224 46 1 5.3510 -3.9753 -2.1076 47 1 8.2192 -2.9503 -2.3083 48 1 7.5803 -4.0028 -1.0226 49 1 7.6083 -1.6311 -0.2998 50 1 5.9419 -2.2491 -0.4007 51 1 7.3674 -0.6138 -2.5480 52 1 6.1217 -0.0019 -1.4332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734086496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:03 Heat of formation + Delta-G solvation = -66.875532 kcal Electronic energy + Delta-G solvation = -30650.267487 eV Core-core repulsion = 26649.435428 eV Total energy + Delta-G solvation = -4000.832059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71523 -38.69724 -38.11699 -36.45815 -35.23378 -33.86533 -33.31534 -31.20394 -30.99670 -30.53414 -28.64815 -27.10743 -24.88745 -24.25764 -23.49916 -22.62147 -21.26356 -20.83098 -19.99129 -19.26142 -18.98254 -17.85078 -17.51813 -16.32956 -15.85792 -15.44872 -15.12694 -15.08859 -14.68819 -14.44911 -14.24442 -14.04998 -13.94498 -13.67495 -13.52022 -13.34238 -13.20417 -12.85197 -12.79052 -12.44580 -12.26966 -12.19949 -12.05682 -11.99271 -11.49712 -11.47472 -11.42337 -11.40827 -11.24241 -11.00969 -10.78300 -10.41370 -10.38833 -10.37561 -10.25026 -10.18991 -10.05814 -9.47748 -9.34688 -8.80901 -8.37589 -7.96192 -7.90059 -6.38441 -3.79210 2.69280 3.19506 3.26703 3.27744 3.33440 3.82080 3.95928 4.13489 4.35621 4.48121 4.60254 4.63908 4.68398 4.75220 4.79082 4.98203 5.11972 5.15463 5.23255 5.27821 5.29287 5.30177 5.33357 5.36160 5.50346 5.55672 5.58646 5.64406 5.64775 5.74740 5.78555 5.87972 5.89300 5.89786 5.91851 5.95747 6.04510 6.05400 6.11898 6.17161 6.20021 6.26831 6.29936 6.33390 6.72503 7.30705 7.57763 7.73863 7.77993 8.09851 8.48335 8.65205 9.21079 9.58547 10.10140 10.79426 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.003037 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.186450 B = 9217.477619 C =10851.021508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 H 0.115 0.885 4 C -0.155 4.155 5 C -0.187 4.187 6 H 0.122 0.878 7 C 0.559 3.441 8 O -0.544 6.544 9 N -0.698 5.698 10 C 0.191 3.809 11 C 0.044 3.956 12 N -0.659 5.659 13 C 0.052 3.948 14 C 0.443 3.557 15 O -0.584 6.584 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.128 4.128 26 C -0.117 4.117 27 C -0.119 4.119 28 C -0.113 4.113 29 C -0.130 4.130 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.397 0.603 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.343 0.657 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.065 0.935 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 -8.304 18.387 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.137 4.137 3 H 0.133 0.867 4 C -0.193 4.193 5 C -0.208 4.208 6 H 0.140 0.860 7 C 0.346 3.654 8 O -0.423 6.423 9 N -0.348 5.348 10 C 0.105 3.895 11 C -0.086 4.086 12 N -0.292 5.292 13 C -0.080 4.080 14 C 0.229 3.771 15 O -0.469 6.469 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.166 4.166 26 C -0.155 4.155 27 C -0.157 4.157 28 C -0.151 4.151 29 C -0.168 4.168 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.232 0.768 36 H 0.112 0.888 37 H 0.048 0.952 38 H 0.162 0.838 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.982 -7.968 18.822 23.203 hybrid contribution 0.023 -0.083 -1.507 1.509 sum 11.005 -8.051 17.316 22.040 Atomic orbital electron populations 1.21407 0.92366 1.01825 1.02611 1.22307 0.95187 0.95001 1.01210 0.86661 1.23079 1.02929 1.01928 0.91323 1.22341 0.98187 1.05306 0.94950 0.85978 1.19350 0.83790 0.84550 0.77717 1.90587 1.68231 1.21338 1.62097 1.45658 1.28332 1.11264 1.49547 1.20228 0.84626 0.94286 0.90398 1.22422 0.92052 0.99229 0.94921 1.59974 1.35816 1.06506 1.26854 1.21645 0.96615 0.94984 0.94784 1.19824 0.86671 0.86886 0.83724 1.90500 1.66239 1.20023 1.70095 1.41865 1.29874 1.14095 1.34293 1.19688 1.07674 0.99859 1.15575 0.87994 1.25258 0.99347 0.95197 0.98183 1.69618 1.42158 1.05868 1.36703 0.85868 0.80890 0.78838 0.78737 1.20409 1.20960 1.19458 1.21871 1.01821 0.94728 0.98131 1.21510 0.98896 0.97773 0.97327 1.21555 0.98259 0.97582 0.98288 1.21446 1.00713 0.95201 0.97718 1.21935 0.97595 0.99504 0.97806 0.91900 0.92556 0.91542 0.88652 0.88190 0.76796 0.88780 0.95242 0.83773 0.89741 0.94189 0.77483 0.91908 0.90446 0.90638 0.91757 0.91955 0.92089 0.92291 0.92365 0.92008 0.91597 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.19 37.16 0.38 -0.88 16 2 C -0.12 -1.35 5.92 -90.62 -0.54 -1.89 16 3 H 0.12 1.50 7.67 -51.93 -0.40 1.10 16 4 C -0.16 -1.46 9.88 -26.70 -0.26 -1.72 16 5 C -0.19 -2.19 5.91 -91.74 -0.54 -2.73 16 6 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 7 C 0.56 7.59 7.02 -10.99 -0.08 7.51 16 8 O -0.54 -8.92 12.56 5.56 0.07 -8.85 16 9 N -0.70 -8.03 3.80 -47.61 -0.18 -8.21 16 10 C 0.19 2.15 0.42 -131.82 -0.06 2.10 16 11 C 0.04 0.62 4.27 -3.83 -0.02 0.60 16 12 N -0.66 -11.03 5.79 -115.05 -0.67 -11.70 16 13 C 0.05 0.99 6.16 -4.97 -0.03 0.96 16 14 C 0.44 10.77 7.82 -10.98 -0.09 10.69 16 15 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 16 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 17 C -0.30 -8.47 9.68 -14.94 -0.14 -8.62 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 21 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.13 -1.22 4.57 -26.74 -0.12 -1.34 16 26 C -0.12 -0.93 5.75 -26.74 -0.15 -1.08 16 27 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 28 C -0.11 -1.00 5.77 -26.73 -0.15 -1.15 16 29 C -0.13 -1.37 4.58 -26.73 -0.12 -1.49 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.40 3.97 7.20 -40.82 -0.29 3.68 16 36 H 0.09 1.53 6.25 -51.93 -0.32 1.21 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.34 5.76 6.90 -39.29 -0.27 5.49 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.39 9.87 7.90 -40.82 -0.32 9.54 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.08 0.83 6.82 -51.93 -0.35 0.47 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.48 6.79 -51.92 -0.35 0.13 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.58 7.60 -51.93 -0.39 0.19 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.08 1.10 6.28 -51.93 -0.33 0.77 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -32.26 407.15 -9.96 -42.22 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -8.87 Total: 18.68 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.18 Total: 0.38 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.18 Total: -58.98 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.16 Total: -24.74 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.26 -9.96 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734086496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.653 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds