Wall clock time and date at job start Tue Mar 31 2020 22:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.55517 * 2 1 4 4 C 1.53077 * 117.51296 * 145.72082 * 2 1 3 5 5 C 1.53000 * 59.98389 * 107.47936 * 4 2 1 6 6 H 1.09008 * 117.49961 * 252.50187 * 5 4 2 7 7 C 1.50696 * 117.50082 * 107.50426 * 5 4 2 8 8 O 1.21287 * 120.00084 * 291.25115 * 7 5 4 9 9 N 1.34772 * 120.00400 * 111.25656 * 7 5 4 10 10 C 1.46932 * 120.62839 * 354.30498 * 9 7 5 11 11 C 1.53188 * 108.77555 * 126.37342 * 10 9 7 12 12 C 1.53049 * 109.31290 * 54.63383 * 11 10 9 13 13 C 1.53043 * 109.53891 * 298.64102 * 12 11 10 14 14 C 1.46926 * 120.63402 * 174.28971 * 9 7 5 15 15 H 1.09001 * 109.58618 * 113.69713 * 14 9 7 16 16 C 1.52998 * 109.58468 * 353.41422 * 14 9 7 17 17 N 1.46505 * 109.47099 * 181.39741 * 16 14 9 18 18 C 1.34769 * 120.00116 * 184.95159 * 17 16 14 19 19 O 1.21287 * 120.00111 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00096 * 180.02562 * 18 17 16 21 21 C 1.52999 * 109.47280 * 179.97438 * 20 18 17 22 22 N 1.46498 * 109.47475 * 180.02562 * 21 20 18 23 23 C 1.36932 * 120.00269 * 180.02562 * 22 21 20 24 24 H 1.07999 * 120.00167 * 359.97438 * 23 22 21 25 25 C 1.38811 * 119.99975 * 179.97438 * 23 22 21 26 26 N 1.31614 * 120.00218 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 120.00027 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47180 * 89.99827 * 27 25 23 29 29 H 1.48505 * 109.47075 * 209.99827 * 27 25 23 30 30 H 1.48495 * 109.46906 * 330.00221 * 27 25 23 31 31 H 1.09007 * 109.47085 * 205.67068 * 1 2 3 32 32 H 1.09000 * 109.47233 * 325.66582 * 1 2 3 33 33 H 1.08993 * 109.47065 * 85.66819 * 1 2 3 34 34 H 1.09002 * 117.49559 * 359.97438 * 4 2 1 35 35 H 1.09000 * 117.51555 * 214.95217 * 4 2 1 36 36 H 1.08999 * 109.58570 * 246.15963 * 10 9 7 37 37 H 1.09004 * 109.58250 * 6.58670 * 10 9 7 38 38 H 1.08994 * 109.49994 * 174.58484 * 11 10 9 39 39 H 1.09003 * 109.49965 * 294.69258 * 11 10 9 40 40 H 1.08997 * 109.46047 * 178.61724 * 12 11 10 41 41 H 1.09000 * 109.45599 * 58.65962 * 12 11 10 42 42 H 1.09002 * 109.49428 * 301.40591 * 13 12 11 43 43 H 1.08996 * 109.52127 * 181.33645 * 13 12 11 44 44 H 1.08999 * 109.47105 * 301.39555 * 16 14 9 45 45 H 1.09000 * 109.47105 * 61.39625 * 16 14 9 46 46 H 0.97003 * 119.99441 * 4.94232 * 17 16 14 47 47 H 1.08997 * 109.47116 * 299.99447 * 20 18 17 48 48 H 1.08995 * 109.47165 * 59.99658 * 20 18 17 49 49 H 1.09008 * 109.47211 * 299.99998 * 21 20 18 50 50 H 1.08995 * 109.47245 * 59.99302 * 21 20 18 51 51 H 0.97003 * 119.99965 * 359.97438 * 22 21 20 52 52 H 0.97008 * 120.00527 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2371 -1.1218 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6112 -1.8581 -1.2689 7 6 3.5290 -0.7806 -1.4615 8 8 3.9705 0.3476 -1.4032 9 7 4.1943 -1.7298 -2.1490 10 6 3.7402 -3.1271 -2.1266 11 6 3.5658 -3.6120 -3.5692 12 6 4.8688 -3.3867 -4.3399 13 6 5.1944 -1.8916 -4.3688 14 6 5.3872 -1.3872 -2.9353 15 1 6.2642 -1.8607 -2.4940 16 6 5.5752 0.1311 -2.9467 17 7 6.7459 0.4721 -3.7589 18 6 7.1660 1.7506 -3.8321 19 8 6.5747 2.6189 -3.2259 20 6 8.3699 2.1014 -4.6680 21 6 8.6309 3.6064 -4.5799 22 7 9.8008 3.9476 -5.3929 23 6 10.2276 5.2466 -5.4674 24 1 9.7015 6.0197 -4.9270 25 6 11.3364 5.5698 -6.2374 26 7 11.9779 4.6276 -6.8955 27 14 11.9183 7.3420 -6.3395 28 1 12.9026 7.6029 -5.2587 29 1 12.5578 7.5777 -7.6589 30 1 10.7571 8.2540 -6.1821 31 1 -0.3633 -0.9263 0.4452 32 1 -0.3634 0.8486 0.5796 33 1 -0.3633 0.0776 -1.0247 34 1 1.6120 -1.8595 1.2680 35 1 3.1725 -0.8765 1.2677 36 1 4.4826 -3.7444 -1.6208 37 1 2.7875 -3.1932 -1.6011 38 1 3.3224 -4.6744 -3.5690 39 1 2.7602 -3.0536 -4.0459 40 1 4.7553 -3.7534 -5.3601 41 1 5.6790 -3.9254 -3.8486 42 1 4.3733 -1.3495 -4.8379 43 1 6.1096 -1.7291 -4.9380 44 1 4.6890 0.6038 -3.3702 45 1 5.7244 0.4864 -1.9271 46 1 7.2186 -0.2223 -4.2438 47 1 9.2399 1.5592 -4.2976 48 1 8.1844 1.8253 -5.7059 49 1 7.7607 4.1484 -4.9505 50 1 8.8160 3.8829 -3.5420 51 1 10.2735 3.2532 -5.8780 52 1 12.7526 4.8534 -7.4339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734606577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:51 Heat of formation + Delta-G solvation = -31.577485 kcal Electronic energy + Delta-G solvation = -29425.396768 eV Core-core repulsion = 25426.095347 eV Total energy + Delta-G solvation = -3999.301421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17365 -39.31559 -38.38905 -36.93844 -35.11163 -34.59963 -33.30314 -32.01680 -31.47856 -29.20126 -29.04802 -27.14431 -25.24079 -24.54313 -23.84349 -22.34391 -21.45125 -21.38738 -20.72258 -20.08045 -19.18399 -17.79889 -17.17428 -16.67916 -16.28248 -15.87594 -15.69239 -15.33842 -14.97920 -14.72591 -14.51157 -14.32601 -14.26298 -14.09746 -13.62501 -13.58821 -13.41308 -13.22795 -13.09346 -13.05074 -12.61432 -12.52212 -12.42212 -12.05237 -11.84249 -11.59863 -11.46857 -11.23685 -11.07657 -10.97051 -10.94917 -10.75524 -10.71394 -10.64018 -10.43655 -10.02351 -9.70052 -9.63502 -9.30845 -9.09385 -8.79795 -8.70903 -6.83389 -5.68864 -2.96739 2.13357 2.39788 3.05209 3.35740 3.49335 3.50773 3.55559 3.58487 3.96638 4.19608 4.29728 4.30803 4.35559 4.40993 4.50498 4.62890 4.68194 4.75164 4.80336 4.92049 4.98335 5.05296 5.16813 5.19773 5.23405 5.27489 5.34628 5.35494 5.40310 5.51474 5.56118 5.57222 5.62043 5.66727 5.66942 5.76019 5.80241 5.89935 5.94724 5.98547 6.18338 6.31174 6.38716 6.59443 6.98503 6.99271 7.03816 7.70642 7.80930 7.87780 8.50006 8.58866 9.61507 10.18687 10.54373 11.54435 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.002003 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.920554 B =13977.277112 C =15370.585279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 H 0.120 0.880 4 C -0.149 4.149 5 C -0.194 4.194 6 H 0.123 0.877 7 C 0.540 3.460 8 O -0.517 6.517 9 N -0.605 5.605 10 C 0.109 3.891 11 C -0.138 4.138 12 C -0.120 4.120 13 C -0.135 4.135 14 C 0.136 3.864 15 H 0.079 0.921 16 C 0.125 3.875 17 N -0.744 5.744 18 C 0.518 3.482 19 O -0.531 6.531 20 C -0.146 4.146 21 C 0.168 3.832 22 N -0.736 5.736 23 C -0.233 4.233 24 H 0.072 0.928 25 C -0.018 4.018 26 N -0.937 5.937 27 Si 0.909 3.091 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.392 0.608 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.028 0.972 50 H 0.028 0.972 51 H 0.382 0.618 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.822 -26.262 11.722 37.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 H 0.138 0.862 4 C -0.186 4.186 5 C -0.215 4.215 6 H 0.141 0.859 7 C 0.328 3.672 8 O -0.393 6.393 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.176 4.176 12 C -0.158 4.158 13 C -0.173 4.173 14 C 0.033 3.967 15 H 0.097 0.903 16 C 0.003 3.997 17 N -0.400 5.400 18 C 0.304 3.696 19 O -0.406 6.406 20 C -0.186 4.186 21 C 0.040 3.960 22 N -0.380 5.380 23 C -0.364 4.364 24 H 0.090 0.910 25 C -0.213 4.213 26 N -0.586 5.586 27 Si 0.740 3.260 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.119 0.881 46 H 0.226 0.774 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.045 0.955 50 H 0.046 0.954 51 H 0.216 0.784 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.039 -24.816 12.242 36.655 hybrid contribution 0.788 0.004 -0.706 1.058 sum -23.251 -24.813 11.536 35.908 Atomic orbital electron populations 1.21400 0.92155 1.02238 1.02269 1.22433 0.95284 0.95259 1.00983 0.86244 1.23121 1.03274 1.01698 0.90529 1.22350 0.97769 1.05531 0.95810 0.85925 1.19814 0.84574 0.84512 0.78265 1.90819 1.66889 1.21146 1.60430 1.47999 1.28427 1.08581 1.48984 1.21790 1.00835 0.81268 0.97463 1.21953 0.98630 1.01614 0.95389 1.21517 0.97409 0.95986 1.00847 1.22043 1.03038 0.96356 0.95846 1.21485 0.87517 0.96270 0.91417 0.90306 1.22056 0.88326 0.91605 0.97761 1.46334 1.32233 1.09511 1.51926 1.20804 0.85578 0.81665 0.81513 1.90716 1.57275 1.47598 1.45035 1.21830 0.95617 1.01044 1.00140 1.20373 0.90842 0.89419 0.95376 1.42358 1.31495 1.07370 1.56790 1.19273 1.08421 0.85387 1.23368 0.91041 1.24738 0.98571 0.97663 1.00347 1.69660 1.22321 1.31255 1.35405 0.86152 0.78505 0.84516 0.76854 1.21755 1.21830 1.20723 0.92426 0.91516 0.91919 0.87807 0.88195 0.91056 0.89281 0.90509 0.91330 0.91272 0.91537 0.91029 0.90303 0.91270 0.88111 0.77366 0.89009 0.89033 0.95451 0.95433 0.78449 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.19 37.16 0.38 -0.30 16 2 C -0.12 -0.92 5.92 -90.58 -0.54 -1.45 16 3 H 0.12 1.19 7.67 -51.93 -0.40 0.79 16 4 C -0.15 -0.92 9.88 -26.69 -0.26 -1.18 16 5 C -0.19 -1.38 4.69 -91.77 -0.43 -1.81 16 6 H 0.12 0.61 6.83 -51.92 -0.35 0.25 16 7 C 0.54 5.54 7.31 -10.99 -0.08 5.46 16 8 O -0.52 -7.58 11.82 5.55 0.07 -7.52 16 9 N -0.61 -4.87 2.97 -165.22 -0.49 -5.36 16 10 C 0.11 0.50 6.35 -3.71 -0.02 0.48 16 11 C -0.14 -0.56 6.08 -26.61 -0.16 -0.72 16 12 C -0.12 -0.59 5.88 -26.68 -0.16 -0.74 16 13 C -0.13 -0.93 5.10 -26.61 -0.14 -1.07 16 14 C 0.14 1.20 3.10 -67.60 -0.21 0.99 16 15 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 16 C 0.13 1.64 3.55 -4.04 -0.01 1.62 16 17 N -0.74 -9.60 5.34 -60.29 -0.32 -9.92 16 18 C 0.52 8.99 7.83 -10.99 -0.09 8.91 16 19 O -0.53 -11.66 15.98 5.55 0.09 -11.57 16 20 C -0.15 -2.54 5.81 -27.88 -0.16 -2.70 16 21 C 0.17 3.85 5.55 -4.04 -0.02 3.83 16 22 N -0.74 -19.88 5.60 -59.91 -0.34 -20.22 16 23 C -0.23 -6.95 9.99 -15.06 -0.15 -7.10 16 24 H 0.07 2.10 7.83 -52.49 -0.41 1.68 16 25 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 26 N -0.94 -29.12 13.06 55.49 0.72 -28.40 16 27 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 30 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.29 5.62 -51.93 -0.29 -0.01 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.49 6.91 -51.93 -0.36 0.14 16 44 H 0.07 1.08 7.27 -51.93 -0.38 0.70 16 45 H 0.10 1.65 6.19 -51.93 -0.32 1.32 16 46 H 0.39 3.73 7.19 -40.82 -0.29 3.44 16 47 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 48 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 49 H 0.03 0.67 8.10 -51.92 -0.42 0.25 16 50 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 51 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 52 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 409.73 15.07 6.17 6.17 Total: -1.00 -37.43 409.73 -10.27 -47.70 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -9.00 Total: 7.17 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -2.15 Total: 3.59 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.42 Total: -63.89 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.15 Total: -19.09 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.43 -10.27 -47.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734606577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.120 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds