Wall clock time and date at job start Tue Mar 31 2020 21:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.82117 * 2 1 4 4 C 1.54894 * 110.75410 * 123.34349 * 2 1 3 5 5 C 1.54266 * 104.31305 * 156.31914 * 4 2 1 6 6 C 1.53869 * 106.60031 * 336.32486 * 5 4 2 7 7 H 1.08999 * 110.04012 * 119.28327 * 6 5 4 8 8 C 1.53009 * 110.02997 * 240.66603 * 6 5 4 9 9 C 1.50697 * 109.46988 * 293.54486 * 8 6 5 10 10 O 1.21281 * 120.00287 * 359.97438 * 9 8 6 11 11 N 1.34774 * 120.00016 * 180.02562 * 9 8 6 12 12 C 1.46502 * 120.00181 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46842 * 179.97438 * 12 11 9 14 14 C 1.53933 * 113.73164 * 273.76493 * 13 12 11 15 15 N 1.48193 * 86.09887 * 221.96089 * 14 13 12 16 16 C 1.46906 * 111.07061 * 137.52507 * 15 14 13 17 17 C 1.50694 * 109.47443 * 90.56438 * 16 15 14 18 18 O 1.21287 * 120.00038 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00181 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00206 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00054 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00025 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99954 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47334 * 90.00095 * 24 22 20 26 26 H 1.48506 * 109.47299 * 209.99625 * 24 22 20 27 27 H 1.48495 * 109.47241 * 329.99726 * 24 22 20 28 28 C 1.47959 * 90.79798 * 24.60307 * 15 14 13 29 29 C 1.54266 * 106.59800 * 359.97438 * 6 5 4 30 30 H 1.08995 * 109.46474 * 298.11671 * 1 2 3 31 31 H 1.09002 * 109.46360 * 58.11374 * 1 2 3 32 32 H 1.08994 * 109.47089 * 178.11556 * 1 2 3 33 33 H 1.09002 * 110.48891 * 37.57340 * 4 2 1 34 34 H 1.08998 * 110.48494 * 275.06427 * 4 2 1 35 35 H 1.09001 * 110.03084 * 95.60669 * 5 4 2 36 36 H 1.08996 * 110.03108 * 216.98559 * 5 4 2 37 37 H 1.09002 * 109.46887 * 53.54340 * 8 6 5 38 38 H 1.08997 * 109.47186 * 173.54237 * 8 6 5 39 39 H 0.97001 * 119.99554 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.46624 * 299.99694 * 12 11 9 41 41 H 1.08998 * 109.47051 * 60.00260 * 12 11 9 42 42 H 1.08996 * 112.93924 * 45.33244 * 13 12 11 43 43 H 1.09000 * 113.75884 * 336.23811 * 14 13 12 44 44 H 1.09001 * 113.75988 * 107.60877 * 14 13 12 45 45 H 1.09003 * 109.47038 * 210.57128 * 16 15 14 46 46 H 1.09005 * 109.46517 * 330.56056 * 16 15 14 47 47 H 0.97004 * 120.00059 * 0.02562 * 19 17 16 48 48 H 0.96993 * 119.99864 * 180.02562 * 23 22 20 49 49 H 1.09000 * 113.75338 * 221.08225 * 28 15 14 50 50 H 1.09001 * 113.86076 * 89.73710 * 28 15 14 51 51 H 1.09005 * 110.48526 * 142.29451 * 29 6 5 52 52 H 1.09006 * 110.48581 * 264.93644 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9175 1.0188 0.0000 4 6 2.0789 -0.7961 1.2100 5 6 3.4941 -1.2271 0.7727 6 6 3.4973 -1.2291 -0.7660 7 1 4.2372 -0.5209 -1.1389 8 6 3.8072 -2.6337 -1.2876 9 6 5.2218 -3.0041 -0.9231 10 8 5.9140 -2.2215 -0.3072 11 7 5.7180 -4.2045 -1.2824 12 6 7.0933 -4.5644 -0.9285 13 6 7.4032 -5.9690 -1.4500 14 6 6.9875 -7.0939 -0.4849 15 7 8.2790 -7.7318 -0.8330 16 6 8.9354 -8.2813 0.3609 17 6 8.5042 -9.7117 0.5578 18 8 7.7262 -10.2231 -0.2195 19 7 8.9822 -10.4225 1.5984 20 6 8.5895 -11.7237 1.7779 21 1 7.8967 -12.1790 1.0857 22 6 9.0820 -12.4563 2.8509 23 7 9.9238 -11.9018 3.6940 24 14 8.5474 -14.2294 3.0951 25 1 9.4795 -15.1315 2.3720 26 1 8.5655 -14.5570 4.5434 27 1 7.1724 -14.4095 2.5640 28 6 8.8537 -6.4178 -1.1967 29 6 2.0836 -0.7999 -1.2101 30 1 -0.3632 0.4843 0.9064 31 1 -0.3632 0.5429 -0.8726 32 1 -0.3633 -1.0271 -0.0338 33 1 1.4574 -1.6700 1.4054 34 1 2.1298 -0.1601 2.0937 35 1 4.2326 -0.5179 1.1466 36 1 3.7129 -2.2265 1.1486 37 1 3.1174 -3.3484 -0.8388 38 1 3.6948 -2.6518 -2.3716 39 1 5.1644 -4.8302 -1.7753 40 1 7.7828 -3.8494 -1.3774 41 1 7.2060 -4.5466 0.1555 42 1 7.0684 -6.1249 -2.4755 43 1 6.9207 -6.7771 0.5560 44 1 6.1149 -7.6568 -0.8163 45 1 10.0170 -8.2423 0.2312 46 1 8.6529 -7.6930 1.2340 47 1 9.6036 -10.0132 2.2207 48 1 10.2678 -12.4133 4.4429 49 1 9.4694 -6.4416 -2.0958 50 1 9.3345 -5.9016 -0.3657 51 1 2.1379 -0.1643 -2.0940 52 1 1.4632 -1.6746 -1.4055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753408393.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:39 Heat of formation + Delta-G solvation = -64.313244 kcal Electronic energy + Delta-G solvation = -28372.742920 eV Core-core repulsion = 24372.021970 eV Total energy + Delta-G solvation = -4000.720950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.46597 -39.82258 -38.41594 -37.70795 -34.91569 -33.86631 -32.98620 -31.36775 -30.87574 -29.87742 -28.14924 -26.80485 -26.07051 -24.95011 -24.29241 -22.53407 -21.03849 -20.39974 -19.98211 -19.45817 -19.12669 -17.86902 -17.13878 -16.64620 -16.42797 -16.11740 -15.60520 -15.24943 -14.95828 -14.81500 -14.60596 -14.37621 -14.18765 -13.87970 -13.67251 -13.46348 -13.33891 -13.13555 -12.97700 -12.60054 -12.46525 -12.29136 -12.17508 -11.61186 -11.47345 -11.42094 -11.31771 -11.24100 -11.06287 -10.98853 -10.94202 -10.85980 -10.70770 -10.66860 -10.64482 -10.38562 -10.19915 -9.93563 -9.48496 -9.26537 -8.72321 -8.16343 -7.94280 -6.40007 -3.80760 2.46796 2.94901 3.18661 3.26959 3.32772 3.89081 3.94701 4.16958 4.21666 4.23317 4.32071 4.38150 4.59114 4.66372 4.76630 4.86518 4.97745 5.07047 5.08346 5.13516 5.20724 5.21565 5.27116 5.28188 5.33088 5.36807 5.38784 5.41044 5.51254 5.53200 5.54541 5.61784 5.68649 5.71787 5.73631 5.76759 5.80558 5.84447 5.93640 6.01898 6.10179 6.14075 6.16408 6.28280 6.29130 6.57759 7.16739 7.28937 7.56563 8.03703 8.07894 8.64162 9.20218 9.56758 10.09244 10.77916 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.001655 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.235349 B =16911.989449 C =17868.429818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.124 4.124 5 C -0.110 4.110 6 C -0.076 4.076 7 H 0.078 0.922 8 C -0.136 4.136 9 C 0.510 3.490 10 O -0.539 6.539 11 N -0.730 5.730 12 C 0.128 3.872 13 C -0.131 4.131 14 C 0.016 3.984 15 N -0.450 5.450 16 C 0.010 3.990 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.009 3.991 29 C -0.117 4.117 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.091 0.909 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.072 24.368 -8.758 29.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.161 4.161 5 C -0.147 4.147 6 C -0.094 4.094 7 H 0.097 0.903 8 C -0.176 4.176 9 C 0.296 3.704 10 O -0.416 6.416 11 N -0.382 5.382 12 C 0.004 3.996 13 C -0.150 4.150 14 C -0.113 4.113 15 N -0.172 5.172 16 C -0.122 4.122 17 C 0.231 3.769 18 O -0.460 6.460 19 N -0.205 5.205 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.121 4.121 29 C -0.154 4.154 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.236 0.764 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.089 0.911 51 H 0.083 0.917 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.958 23.925 -9.106 28.692 hybrid contribution 0.137 -0.520 1.089 1.215 sum -12.821 23.406 -8.017 27.865 Atomic orbital electron populations 1.21758 0.95039 1.01812 1.01525 1.22161 0.95229 0.99196 0.95109 0.90724 1.22487 0.96505 0.99599 0.97533 1.22094 0.96333 1.01803 0.94513 1.21516 0.97000 0.94832 0.96097 0.90327 1.21847 0.93731 0.99041 1.02952 1.20753 0.89452 0.81250 0.78928 1.90708 1.60858 1.50025 1.39963 1.46068 1.15239 1.17959 1.58962 1.21414 0.82656 0.95161 1.00344 1.23284 0.97697 0.92846 1.01154 1.24070 0.95849 0.93645 0.97727 1.68414 1.02495 1.17583 1.28662 1.22480 1.00223 0.96710 0.92806 1.19690 0.85912 0.87319 0.83930 1.90513 1.37954 1.71533 1.45958 1.41881 1.41822 1.12339 1.24418 1.19695 1.25374 0.87336 1.10395 0.87979 1.25252 0.96604 1.00368 0.95772 1.69612 1.31569 1.37850 1.15416 0.85860 0.79195 0.81962 0.77273 1.20407 1.20956 1.19469 1.23944 0.95474 0.90911 1.01770 1.22587 0.95380 0.99751 0.97699 0.92732 0.92790 0.92606 0.91729 0.91936 0.91536 0.92060 0.88781 0.88971 0.76385 0.91227 0.91366 0.87671 0.91329 0.89080 0.89403 0.92458 0.77560 0.91921 0.89058 0.91121 0.91698 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.28 37.16 0.35 -0.42 16 2 C -0.10 -0.61 3.51 -88.42 -0.31 -0.92 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.87 6.26 -25.07 -0.16 -1.03 16 5 C -0.11 -0.95 5.33 -25.62 -0.14 -1.08 16 6 C -0.08 -0.57 2.56 -89.50 -0.23 -0.80 16 7 H 0.08 0.70 7.97 -51.93 -0.41 0.28 16 8 C -0.14 -0.91 4.86 -27.88 -0.14 -1.04 16 9 C 0.51 5.00 7.35 -10.99 -0.08 4.92 16 10 O -0.54 -7.33 15.07 5.56 0.08 -7.24 16 11 N -0.73 -6.18 5.56 -60.29 -0.33 -6.52 16 12 C 0.13 1.23 5.51 -4.04 -0.02 1.21 16 13 C -0.13 -1.33 3.93 -89.69 -0.35 -1.68 16 14 C 0.02 0.22 7.53 -2.63 -0.02 0.20 16 15 N -0.45 -7.30 5.65 -239.52 -1.35 -8.65 16 16 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.76 7.83 -10.99 -0.09 10.67 16 18 O -0.58 -16.01 16.01 5.55 0.09 -15.92 16 19 N -0.57 -14.61 5.29 -10.97 -0.06 -14.66 16 20 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.01 0.10 7.51 -2.76 -0.02 0.08 16 29 C -0.12 -0.69 5.82 -24.87 -0.14 -0.84 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.29 8.13 -51.93 -0.42 -0.13 16 33 H 0.06 0.44 8.05 -51.93 -0.42 0.03 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.59 7.33 -51.93 -0.38 0.21 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.40 2.50 8.47 -40.82 -0.35 2.16 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 42 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.92 7.26 -51.93 -0.38 0.55 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 46 H 0.06 0.92 7.39 -51.93 -0.38 0.54 16 47 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 51 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.07 0.37 7.76 -51.93 -0.40 -0.03 16 LS Contribution 416.51 15.07 6.28 6.28 Total: -1.00 -34.05 416.51 -10.50 -44.55 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -9.29 Total: 8.70 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.62 Total: 1.32 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.02 Total: -53.89 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.17 Total: -23.16 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.05 -10.50 -44.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753408393.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.761 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds