Wall clock time and date at job start Tue Mar 31 2020 20:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46835 * 2 1 4 4 C 1.53006 * 109.47168 * 240.00198 * 2 1 3 5 5 C 1.52997 * 109.46858 * 299.99784 * 4 2 1 6 6 C 1.52995 * 109.47322 * 300.00169 * 5 4 2 7 7 C 1.52997 * 109.47228 * 59.99974 * 6 5 4 8 8 C 1.52995 * 109.47037 * 120.00013 * 2 1 3 9 9 C 1.52997 * 109.47228 * 299.99987 * 8 2 1 10 10 N 1.46902 * 109.47057 * 294.96301 * 9 8 2 11 11 C 1.46899 * 110.99629 * 185.11553 * 10 9 8 12 12 C 1.50707 * 109.46933 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99735 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00026 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00262 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99700 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00403 * 179.97438 * 15 14 12 18 18 N 1.31402 * 119.99720 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99986 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47203 * 90.00249 * 19 17 15 21 21 H 1.48506 * 109.47113 * 210.00288 * 19 17 15 22 22 H 1.48503 * 109.47189 * 330.00135 * 19 17 15 23 23 N 1.46499 * 109.46862 * 179.97438 * 8 2 1 24 24 C 1.34776 * 119.99878 * 184.34753 * 23 8 2 25 25 O 1.21283 * 120.00372 * 354.60550 * 24 23 8 26 26 C 1.50702 * 120.00063 * 174.61200 * 24 23 8 27 27 C 1.53008 * 117.49522 * 248.74829 * 26 24 23 28 28 C 1.52995 * 117.50124 * 180.08976 * 26 24 23 29 29 H 1.08996 * 109.47470 * 300.00114 * 1 2 3 30 30 H 1.09007 * 109.47349 * 60.00587 * 1 2 3 31 31 H 1.09008 * 109.47274 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46933 * 59.99658 * 4 2 1 33 33 H 1.08999 * 109.47098 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47510 * 60.00264 * 5 4 2 35 35 H 1.09006 * 109.46787 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47153 * 300.00003 * 6 5 4 37 37 H 1.09008 * 109.47323 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47013 * 180.02562 * 7 6 5 39 39 H 1.09002 * 109.46777 * 60.00411 * 7 6 5 40 40 H 1.09002 * 109.47033 * 54.96133 * 9 8 2 41 41 H 1.08996 * 109.47168 * 174.96136 * 9 8 2 42 42 H 1.00889 * 111.00155 * 61.16189 * 10 9 8 43 43 H 1.08995 * 109.47668 * 299.99691 * 11 10 9 44 44 H 1.09005 * 109.47408 * 60.00092 * 11 10 9 45 45 H 0.97001 * 119.99841 * 0.02562 * 14 12 11 46 46 H 0.97008 * 119.99923 * 179.97438 * 18 17 15 47 47 H 0.97001 * 120.00293 * 4.35127 * 23 8 2 48 48 H 1.08994 * 115.55204 * 34.41127 * 26 24 23 49 49 H 1.08996 * 117.49904 * 359.97438 * 27 26 24 50 50 H 1.09002 * 117.49804 * 145.01972 * 27 26 24 51 51 H 1.09005 * 117.49993 * 214.97523 * 28 26 24 52 52 H 1.09002 * 117.50181 * 359.96802 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0400 -2.8849 -0.0001 7 6 1.5300 -2.1637 1.2492 8 6 2.0400 -0.7212 1.2492 9 6 1.5300 0.0000 2.4984 10 7 2.1164 1.3454 2.5608 11 6 1.7452 2.0240 3.8096 12 6 2.3642 3.3978 3.8379 13 8 3.0469 3.7746 2.9089 14 7 2.1583 4.2081 4.8950 15 6 2.7209 5.4580 4.9206 16 1 3.3288 5.7935 4.0934 17 6 2.5081 6.2936 6.0102 18 7 1.7680 5.8855 7.0164 19 14 3.2741 7.9969 6.0446 20 1 2.3391 8.9727 5.4294 21 1 3.5448 8.3896 7.4510 22 1 4.5477 7.9824 5.2809 23 7 3.5050 -0.7217 1.2489 24 6 4.1788 -1.3804 2.2125 25 8 3.5765 -1.8898 3.1337 26 6 5.6808 -1.4838 2.1454 27 6 6.2823 -2.8637 1.8714 28 6 6.3873 -2.2461 3.2681 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7216 -1.2491 34 1 0.4400 -2.1638 -1.2493 35 1 1.8931 -2.6774 -2.1396 36 1 3.1300 -2.8850 0.0000 37 1 1.6771 -3.9128 -0.0003 38 1 1.8937 -2.6773 2.1391 39 1 0.4400 -2.1638 1.2491 40 1 0.4437 0.0788 2.4544 41 1 1.8177 -0.5633 3.3861 42 1 1.8486 1.8942 1.7577 43 1 0.6604 2.1128 3.8664 44 1 2.1074 1.4452 4.6593 45 1 1.6119 3.9069 5.6378 46 1 1.6198 6.4687 7.7773 47 1 3.9900 -0.2480 0.5552 48 1 6.1932 -0.6188 1.7244 49 1 5.5918 -3.6967 1.7402 50 1 7.1908 -2.9064 1.2706 51 1 7.3648 -1.8828 3.5856 52 1 5.7659 -2.6724 4.0556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753530825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:39 Heat of formation + Delta-G solvation = -58.633226 kcal Electronic energy + Delta-G solvation = -31018.181285 eV Core-core repulsion = 27017.706640 eV Total energy + Delta-G solvation = -4000.474646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99796 -38.82265 -38.13872 -36.05709 -35.25003 -33.88044 -33.42659 -32.08660 -31.19443 -30.70763 -27.63029 -26.56407 -24.78795 -24.22432 -23.41911 -22.56445 -22.33934 -21.06062 -19.74094 -19.19320 -18.54700 -17.85266 -17.47916 -16.47286 -16.14686 -15.58495 -15.42253 -15.03110 -14.85348 -14.46519 -14.37864 -14.15276 -13.93739 -13.72456 -13.53098 -13.34280 -13.22868 -12.87771 -12.50211 -12.39703 -12.23473 -12.09178 -11.84575 -11.68362 -11.63427 -11.48107 -11.47429 -11.37700 -11.12077 -10.99416 -10.69226 -10.62737 -10.51826 -10.37658 -10.29177 -10.18730 -10.11786 -9.47650 -9.36504 -8.82260 -8.36255 -7.95216 -7.88753 -6.38340 -3.79043 2.66588 3.19499 3.22419 3.27771 3.33874 3.83101 3.96169 4.13843 4.34754 4.45388 4.53977 4.61630 4.69185 4.77880 4.81573 4.93479 5.07325 5.11894 5.16550 5.20096 5.26088 5.29873 5.32700 5.44088 5.45413 5.53102 5.54009 5.57993 5.66898 5.74114 5.80631 5.84031 5.86086 5.88511 5.92049 5.95079 6.00557 6.04855 6.08675 6.17196 6.21021 6.23919 6.32365 6.36191 6.72048 7.31912 7.57923 7.72123 7.78860 8.10062 8.45134 8.65368 9.21258 9.58736 10.10350 10.79549 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.002929 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.199603 B = 9557.808326 C =10834.381256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 H 0.083 0.917 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.133 4.133 8 C 0.196 3.804 9 C 0.044 3.956 10 N -0.659 5.659 11 C 0.052 3.948 12 C 0.443 3.557 13 O -0.584 6.584 14 N -0.565 5.565 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.270 1.270 23 N -0.697 5.697 24 C 0.555 3.445 25 O -0.543 6.543 26 C -0.191 4.191 27 C -0.156 4.156 28 C -0.147 4.147 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.090 0.910 42 H 0.342 0.658 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.399 0.601 48 H 0.122 0.878 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -19.236 -14.610 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.150 4.150 7 C -0.172 4.172 8 C 0.110 3.890 9 C -0.087 4.087 10 N -0.291 5.291 11 C -0.080 4.080 12 C 0.229 3.771 13 O -0.469 6.469 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.194 1.194 23 N -0.346 5.346 24 C 0.341 3.659 25 O -0.421 6.421 26 C -0.212 4.212 27 C -0.194 4.194 28 C -0.185 4.185 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.162 0.838 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.233 0.767 48 H 0.139 0.861 49 H 0.114 0.886 50 H 0.118 0.882 51 H 0.118 0.882 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.105 -19.457 -14.161 24.090 hybrid contribution -0.692 1.372 0.117 1.542 sum 0.413 -18.084 -14.044 22.900 Atomic orbital electron populations 1.21986 0.94351 1.02314 1.02143 1.21360 0.96584 0.99996 0.93755 0.89884 1.21548 1.00599 0.95623 0.97233 1.21580 1.00915 0.95592 0.97707 1.21437 1.00906 0.98406 0.94267 1.21964 1.00724 0.94964 0.99523 1.20197 0.79829 0.94689 0.94289 1.22484 0.95903 0.90997 0.99283 1.59969 1.62890 1.02327 1.03954 1.21644 0.97513 0.94994 0.93882 1.19829 0.86091 0.86460 0.84734 1.90499 1.43005 1.76032 1.37330 1.41864 1.45867 1.14311 1.18090 1.19689 1.28185 0.90083 1.04856 0.87993 1.25256 0.97292 1.00208 0.95235 1.69616 1.38742 1.37825 1.08164 0.85865 0.79469 0.81654 0.77332 1.20466 1.20934 1.19428 1.45646 1.06102 1.53325 1.29526 1.19370 0.87793 0.77461 0.81247 1.90597 1.69649 1.48517 1.33326 1.22213 0.93275 0.97885 1.07812 1.22903 1.02334 0.94169 0.99994 1.22918 1.01511 1.01901 0.92157 0.92269 0.92304 0.91838 0.91788 0.91914 0.91760 0.92384 0.92080 0.92407 0.89496 0.91201 0.94883 0.89153 0.83809 0.94209 0.89758 0.77485 0.91909 0.76675 0.86053 0.88569 0.88171 0.88161 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.15 37.16 0.30 -1.04 16 2 C -0.10 -0.94 2.05 -90.62 -0.19 -1.13 16 3 H 0.08 0.92 6.80 -51.93 -0.35 0.56 16 4 C -0.11 -0.90 5.28 -26.73 -0.14 -1.04 16 5 C -0.12 -0.92 5.65 -26.73 -0.15 -1.07 16 6 C -0.11 -0.99 5.76 -26.74 -0.15 -1.14 16 7 C -0.13 -1.40 4.18 -26.73 -0.11 -1.51 16 8 C 0.20 2.19 0.20 -131.83 -0.03 2.17 16 9 C 0.04 0.61 4.21 -3.82 -0.02 0.59 16 10 N -0.66 -11.01 5.80 -115.06 -0.67 -11.68 16 11 C 0.05 0.99 6.16 -4.97 -0.03 0.96 16 12 C 0.44 10.79 7.82 -10.98 -0.09 10.70 16 13 O -0.58 -16.01 15.78 5.55 0.09 -15.93 16 14 N -0.56 -14.74 5.29 -10.96 -0.06 -14.80 16 15 C -0.30 -8.49 9.68 -14.94 -0.14 -8.64 16 16 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -25.06 13.05 55.50 0.72 -24.34 16 19 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 N -0.70 -7.99 3.70 -47.61 -0.18 -8.16 16 24 C 0.55 7.36 6.94 -10.98 -0.08 7.28 16 25 O -0.54 -8.79 12.55 5.56 0.07 -8.72 16 26 C -0.19 -2.09 6.19 -91.77 -0.57 -2.66 16 27 C -0.16 -1.37 10.24 -26.69 -0.27 -1.64 16 28 C -0.15 -1.54 10.05 -26.70 -0.27 -1.81 16 29 H 0.06 0.59 6.32 -51.93 -0.33 0.26 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.52 4.81 -51.92 -0.25 0.27 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.49 6.95 -51.93 -0.36 0.13 16 34 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.57 7.53 -51.93 -0.39 0.18 16 37 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.09 1.12 6.04 -51.93 -0.31 0.81 16 39 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 40 H 0.03 0.43 6.17 -51.93 -0.32 0.11 16 41 H 0.09 1.47 6.44 -51.93 -0.33 1.14 16 42 H 0.34 5.75 6.87 -39.30 -0.27 5.48 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.39 9.88 7.90 -40.82 -0.32 9.55 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 47 H 0.40 4.05 7.48 -40.82 -0.31 3.75 16 48 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.11 1.28 7.67 -51.93 -0.40 0.88 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -32.42 395.83 -9.46 -41.88 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -8.35 Total: 18.90 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.03 Total: 0.53 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.18 Total: -58.98 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.16 Total: -24.65 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.42 -9.46 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753530825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.756 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds