Wall clock time and date at job start Tue Mar 31 2020 20:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.05302 * 2 1 4 4 C 1.54264 * 110.03777 * 121.41712 * 2 1 3 5 5 C 1.54885 * 104.19765 * 142.89681 * 4 2 1 6 6 C 1.54897 * 102.74844 * 322.05969 * 5 4 2 7 7 C 1.53874 * 110.03321 * 238.58957 * 2 1 3 8 8 C 1.53005 * 110.03274 * 359.97438 * 7 2 1 9 9 C 1.50694 * 110.03642 * 121.42619 * 7 2 1 10 10 O 1.21286 * 119.99893 * 357.95910 * 9 7 2 11 11 N 1.34780 * 120.00239 * 177.96101 * 9 7 2 12 12 C 1.46495 * 119.99763 * 5.18528 * 11 9 7 13 13 C 1.46499 * 119.99995 * 185.18406 * 11 9 7 14 14 C 1.53936 * 113.73152 * 218.76361 * 13 11 9 15 15 N 1.48186 * 86.10142 * 221.95473 * 14 13 11 16 16 C 1.46900 * 111.06781 * 137.52168 * 15 14 13 17 17 C 1.50703 * 109.47185 * 70.56811 * 16 15 14 18 18 O 1.21295 * 119.99808 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00064 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00165 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00391 * 0.02562 * 20 19 17 22 22 C 1.38959 * 120.00283 * 180.02562 * 20 19 17 23 23 N 1.31404 * 119.99676 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99959 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 60.00592 * 24 22 20 26 26 H 1.48504 * 109.46676 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47525 * 300.00208 * 24 22 20 28 28 C 1.47956 * 90.79727 * 24.60364 * 15 14 13 29 29 H 1.09003 * 109.47420 * 300.03131 * 1 2 3 30 30 H 1.08996 * 109.47630 * 60.03848 * 1 2 3 31 31 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.09000 * 110.48889 * 261.58139 * 4 2 1 33 33 H 1.08998 * 110.48154 * 24.21982 * 4 2 1 34 34 H 1.08999 * 110.75688 * 80.37399 * 5 4 2 35 35 H 1.09004 * 110.75966 * 203.74713 * 5 4 2 36 36 H 1.09000 * 110.48902 * 156.62015 * 6 5 4 37 37 H 1.09004 * 110.48623 * 279.13033 * 6 5 4 38 38 H 1.09004 * 109.46772 * 60.00214 * 8 7 2 39 39 H 1.09002 * 109.46868 * 180.02562 * 8 7 2 40 40 H 1.08993 * 109.47127 * 300.00433 * 8 7 2 41 41 H 1.08995 * 109.47305 * 93.76998 * 12 11 9 42 42 H 1.09009 * 109.47036 * 213.77065 * 12 11 9 43 43 H 1.09000 * 109.47040 * 333.76368 * 12 11 9 44 44 H 1.09004 * 112.93983 * 350.33305 * 13 11 9 45 45 H 1.08991 * 113.76009 * 336.24115 * 14 13 11 46 46 H 1.09006 * 113.75795 * 107.60740 * 14 13 11 47 47 H 1.09008 * 109.47020 * 190.57025 * 16 15 14 48 48 H 1.09002 * 109.47318 * 310.56744 * 16 15 14 49 49 H 0.97006 * 119.99733 * 0.02562 * 19 17 16 50 50 H 0.97006 * 120.00454 * 180.02562 * 23 22 20 51 51 H 1.09009 * 113.75800 * 221.07848 * 28 15 14 52 52 H 1.08996 * 113.86359 * 89.72810 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0585 -0.7554 1.2368 5 6 3.3138 -1.5006 0.7190 6 6 2.8875 -1.9405 -0.7037 7 6 2.0571 -0.7534 -1.2338 8 6 0.8861 -1.2672 -2.0740 9 6 2.9274 0.1566 -2.0616 10 8 3.0860 1.3120 -1.7285 11 7 3.5296 -0.3134 -3.1720 12 6 3.2489 -1.6738 -3.6374 13 6 4.4648 0.5362 -3.9135 14 6 4.3557 0.3906 -5.4420 15 7 5.8372 0.4191 -5.4491 16 6 6.3804 -0.5867 -6.3718 17 6 6.1049 -0.1660 -7.7924 18 8 5.5146 0.8701 -8.0144 19 7 6.5153 -0.9405 -8.8162 20 6 6.2643 -0.5581 -10.1085 21 1 5.7380 0.3640 -10.3063 22 6 6.6870 -1.3569 -11.1641 23 7 7.3269 -2.4790 -10.9235 24 14 6.3455 -0.8353 -12.9250 25 1 6.9909 0.4762 -13.1868 26 1 6.8940 -1.8525 -13.8576 27 1 4.8797 -0.7155 -13.1304 28 6 5.8739 -0.0678 -4.0525 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5132 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 2.3297 -0.0536 2.0255 33 1 1.3144 -1.4660 1.5965 34 1 4.1710 -0.8289 0.6750 35 1 3.5327 -2.3678 1.3421 36 1 3.7637 -2.1035 -1.3312 37 1 2.2792 -2.8438 -0.6575 38 1 0.2770 -0.4248 -2.4018 39 1 1.2696 -1.7994 -2.9446 40 1 0.2777 -1.9438 -1.4739 41 1 2.4469 -1.6472 -4.3751 42 1 4.1461 -2.0950 -4.0911 43 1 2.9450 -2.2914 -2.7923 44 1 4.4629 1.5707 -3.5700 45 1 3.9332 -0.5613 -5.7634 46 1 3.8965 1.2485 -5.9332 47 1 7.4564 -0.6747 -6.2209 48 1 5.9067 -1.5495 -6.1796 49 1 6.9877 -1.7689 -8.6385 50 1 7.6224 -3.0366 -11.6603 51 1 6.6256 0.4244 -3.4353 52 1 5.8967 -1.1540 -3.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754580869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:29 Heat of formation + Delta-G solvation = -26.682563 kcal Electronic energy + Delta-G solvation = -30476.554467 eV Core-core repulsion = 26477.465306 eV Total energy + Delta-G solvation = -3999.089161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.37155 -39.91067 -37.99373 -37.38875 -35.31521 -33.90950 -32.18797 -31.52110 -31.21569 -29.65436 -27.38615 -26.08115 -25.84077 -25.80758 -25.12531 -23.67199 -21.70582 -20.89442 -19.28763 -19.13409 -18.54656 -17.91339 -16.95936 -16.90219 -16.19958 -15.85977 -15.58259 -15.28259 -14.97025 -14.55866 -14.26814 -14.23406 -13.99190 -13.90762 -13.79923 -13.40380 -13.08935 -13.05622 -12.97963 -12.65964 -12.56013 -12.24628 -12.07683 -11.81382 -11.64331 -11.52598 -11.41992 -11.23070 -11.07700 -11.06479 -11.02121 -10.93354 -10.88908 -10.61416 -10.56632 -10.45472 -10.22906 -9.71390 -9.51558 -8.75165 -8.70807 -8.26887 -7.98652 -6.43753 -3.84554 2.47074 2.75582 3.18647 3.24407 3.29003 3.86766 4.00454 4.07149 4.15810 4.21464 4.25891 4.54344 4.61879 4.78606 4.85587 4.88631 4.95138 4.97404 5.00537 5.12826 5.14978 5.18486 5.19890 5.22663 5.29373 5.38614 5.39693 5.44895 5.52057 5.54805 5.60249 5.61843 5.65558 5.71441 5.74070 5.75257 5.77917 5.90277 5.92761 5.98433 6.03109 6.16602 6.23323 6.24076 6.40470 6.57373 7.12360 7.26032 7.53097 8.03143 8.03806 8.59130 9.15848 9.51572 10.03446 10.73917 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025722 B = 0.002138 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.301002 B =13092.445284 C =13183.770985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.096 0.904 4 C -0.118 4.118 5 C -0.126 4.126 6 C -0.119 4.119 7 C -0.079 4.079 8 C -0.156 4.156 9 C 0.528 3.472 10 O -0.536 6.536 11 N -0.603 5.603 12 C 0.058 3.942 13 C 0.113 3.887 14 C 0.014 3.986 15 N -0.448 5.448 16 C 0.014 3.986 17 C 0.443 3.557 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.013 4.013 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.052 0.948 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.093 0.907 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.405 -4.809 23.526 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.115 0.885 4 C -0.155 4.155 5 C -0.163 4.163 6 C -0.156 4.156 7 C -0.082 4.082 8 C -0.212 4.212 9 C 0.316 3.684 10 O -0.413 6.413 11 N -0.335 5.335 12 C -0.085 4.085 13 C 0.009 3.991 14 C -0.116 4.116 15 N -0.171 5.171 16 C -0.118 4.118 17 C 0.228 3.772 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.143 4.143 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.146 0.854 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.111 0.889 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.284 -3.043 23.192 25.552 hybrid contribution -0.026 -1.330 -0.916 1.615 sum -10.309 -4.373 22.276 24.933 Atomic orbital electron populations 1.21972 0.94845 1.01624 1.01698 1.21806 0.95712 1.01089 0.92017 0.88543 1.22429 0.97061 0.98832 0.97189 1.22498 0.98147 1.00020 0.95644 1.22644 0.99497 0.96616 0.96871 1.21385 0.95534 0.95506 0.95816 1.22337 0.97068 1.01850 0.99994 1.20533 0.79429 0.88063 0.80354 1.90653 1.62274 1.18291 1.70033 1.47810 1.44464 1.14851 1.26382 1.22295 1.01886 0.83147 1.01140 1.23240 0.87505 0.96624 0.91728 1.24269 0.90647 1.03048 0.93614 1.68399 1.09248 1.38916 1.00522 1.22440 1.01681 0.93710 0.93998 1.19666 0.85408 0.86486 0.85647 1.90531 1.45481 1.25335 1.84804 1.41857 1.50946 1.21903 1.05372 1.19647 1.34783 1.07414 0.81027 0.87990 1.25259 0.96758 0.95496 1.00407 1.69599 1.38754 1.12672 1.33341 0.85917 0.78821 0.78219 0.81270 1.19854 1.20965 1.19922 1.24491 0.97680 0.99423 0.92748 0.92819 0.92411 0.92408 0.91581 0.91522 0.91386 0.91269 0.90646 0.90274 0.91737 0.91124 0.91069 0.91924 0.91197 0.89122 0.85433 0.91134 0.88227 0.89012 0.92981 0.77518 0.91815 0.88893 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 7.88 37.16 0.29 -0.75 16 2 C -0.09 -0.77 3.10 -89.51 -0.28 -1.05 16 3 H 0.10 1.12 6.39 -51.93 -0.33 0.78 16 4 C -0.12 -0.85 6.36 -25.08 -0.16 -1.01 16 5 C -0.13 -0.90 6.91 -24.74 -0.17 -1.07 16 6 C -0.12 -0.82 4.48 -25.07 -0.11 -0.94 16 7 C -0.08 -0.68 0.61 -154.54 -0.09 -0.78 16 8 C -0.16 -1.11 6.86 37.16 0.25 -0.86 16 9 C 0.53 6.38 6.44 -10.99 -0.07 6.31 16 10 O -0.54 -8.45 14.69 5.55 0.08 -8.37 16 11 N -0.60 -6.76 3.01 -175.28 -0.53 -7.29 16 12 C 0.06 0.49 6.72 59.84 0.40 0.89 16 13 C 0.11 1.51 4.41 -69.63 -0.31 1.21 16 14 C 0.01 0.22 6.25 -2.63 -0.02 0.20 16 15 N -0.45 -7.52 5.95 -239.68 -1.43 -8.95 16 16 C 0.01 0.24 5.31 -4.97 -0.03 0.22 16 17 C 0.44 10.44 7.59 -10.99 -0.08 10.36 16 18 O -0.58 -15.72 15.13 5.54 0.08 -15.64 16 19 N -0.56 -14.23 5.29 -10.96 -0.06 -14.28 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C -0.01 -0.17 7.51 -2.76 -0.02 -0.19 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 6.82 -51.93 -0.35 0.10 16 31 H 0.06 0.35 6.65 -51.93 -0.35 0.00 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.41 7.85 -51.93 -0.41 0.00 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.54 6.00 -51.93 -0.31 0.23 16 37 H 0.08 0.43 7.84 -51.93 -0.41 0.02 16 38 H 0.06 0.52 6.78 -51.93 -0.35 0.17 16 39 H 0.07 0.46 4.45 -51.93 -0.23 0.23 16 40 H 0.07 0.40 6.68 -51.93 -0.35 0.06 16 41 H 0.06 0.52 7.36 -51.93 -0.38 0.13 16 42 H 0.07 0.58 6.52 -51.92 -0.34 0.24 16 43 H 0.09 0.58 3.49 -51.93 -0.18 0.40 16 44 H 0.13 1.93 7.20 -51.93 -0.37 1.56 16 45 H 0.07 1.06 6.52 -51.93 -0.34 0.72 16 46 H 0.10 1.79 8.10 -51.93 -0.42 1.37 16 47 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 48 H 0.05 0.80 7.70 -51.93 -0.40 0.40 16 49 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 52 H 0.07 0.78 6.45 -51.93 -0.34 0.44 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -32.89 388.63 -9.15 -42.03 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -8.23 Total: 9.72 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.63 Total: 4.57 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -1.29 Total: -54.17 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.17 Total: -24.01 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.89 -9.15 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754580869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.349 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds