Wall clock time and date at job start Tue Mar 31 2020 20:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.05302 * 2 1 4 4 C 1.54264 * 110.03777 * 121.41712 * 2 1 3 5 5 C 1.54885 * 104.19765 * 142.89681 * 4 2 1 6 6 C 1.54897 * 102.74844 * 322.05969 * 5 4 2 7 7 C 1.53874 * 110.03321 * 238.58957 * 2 1 3 8 8 C 1.53005 * 110.03274 * 359.97438 * 7 2 1 9 9 C 1.50694 * 110.03642 * 121.42619 * 7 2 1 10 10 O 1.21286 * 119.99893 * 357.95910 * 9 7 2 11 11 N 1.34780 * 120.00239 * 177.96101 * 9 7 2 12 12 C 1.46495 * 119.99763 * 5.18528 * 11 9 7 13 13 C 1.46499 * 119.99995 * 185.18406 * 11 9 7 14 14 C 1.53936 * 113.73152 * 218.76361 * 13 11 9 15 15 N 1.48186 * 86.10142 * 221.95473 * 14 13 11 16 16 C 1.46900 * 111.06781 * 137.52168 * 15 14 13 17 17 C 1.50703 * 109.47185 * 70.56811 * 16 15 14 18 18 O 1.21295 * 119.99808 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00064 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00165 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00391 * 0.02562 * 20 19 17 22 22 C 1.38959 * 120.00283 * 180.02562 * 20 19 17 23 23 N 1.31404 * 119.99676 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99959 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 60.00592 * 24 22 20 26 26 H 1.48504 * 109.46676 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47525 * 300.00208 * 24 22 20 28 28 C 1.47956 * 90.79727 * 24.60364 * 15 14 13 29 29 H 1.09003 * 109.47420 * 300.03131 * 1 2 3 30 30 H 1.08996 * 109.47630 * 60.03848 * 1 2 3 31 31 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.09000 * 110.48889 * 261.58139 * 4 2 1 33 33 H 1.08998 * 110.48154 * 24.21982 * 4 2 1 34 34 H 1.08999 * 110.75688 * 80.37399 * 5 4 2 35 35 H 1.09004 * 110.75966 * 203.74713 * 5 4 2 36 36 H 1.09000 * 110.48902 * 156.62015 * 6 5 4 37 37 H 1.09004 * 110.48623 * 279.13033 * 6 5 4 38 38 H 1.09004 * 109.46772 * 60.00214 * 8 7 2 39 39 H 1.09002 * 109.46868 * 180.02562 * 8 7 2 40 40 H 1.08993 * 109.47127 * 300.00433 * 8 7 2 41 41 H 1.08995 * 109.47305 * 93.76998 * 12 11 9 42 42 H 1.09009 * 109.47036 * 213.77065 * 12 11 9 43 43 H 1.09000 * 109.47040 * 333.76368 * 12 11 9 44 44 H 1.09004 * 112.93983 * 350.33305 * 13 11 9 45 45 H 1.08991 * 113.76009 * 336.24115 * 14 13 11 46 46 H 1.09006 * 113.75795 * 107.60740 * 14 13 11 47 47 H 1.09008 * 109.47020 * 190.57025 * 16 15 14 48 48 H 1.09002 * 109.47318 * 310.56744 * 16 15 14 49 49 H 0.97006 * 119.99733 * 0.02562 * 19 17 16 50 50 H 0.97006 * 120.00454 * 180.02562 * 23 22 20 51 51 H 1.09009 * 113.75800 * 221.07848 * 28 15 14 52 52 H 1.08996 * 113.86359 * 89.72810 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0585 -0.7554 1.2368 5 6 3.3138 -1.5006 0.7190 6 6 2.8875 -1.9405 -0.7037 7 6 2.0571 -0.7534 -1.2338 8 6 0.8861 -1.2672 -2.0740 9 6 2.9274 0.1566 -2.0616 10 8 3.0860 1.3120 -1.7285 11 7 3.5296 -0.3134 -3.1720 12 6 3.2489 -1.6738 -3.6374 13 6 4.4648 0.5362 -3.9135 14 6 4.3557 0.3906 -5.4420 15 7 5.8372 0.4191 -5.4491 16 6 6.3804 -0.5867 -6.3718 17 6 6.1049 -0.1660 -7.7924 18 8 5.5146 0.8701 -8.0144 19 7 6.5153 -0.9405 -8.8162 20 6 6.2643 -0.5581 -10.1085 21 1 5.7380 0.3640 -10.3063 22 6 6.6870 -1.3569 -11.1641 23 7 7.3269 -2.4790 -10.9235 24 14 6.3455 -0.8353 -12.9250 25 1 6.9909 0.4762 -13.1868 26 1 6.8940 -1.8525 -13.8576 27 1 4.8797 -0.7155 -13.1304 28 6 5.8739 -0.0678 -4.0525 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5132 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 2.3297 -0.0536 2.0255 33 1 1.3144 -1.4660 1.5965 34 1 4.1710 -0.8289 0.6750 35 1 3.5327 -2.3678 1.3421 36 1 3.7637 -2.1035 -1.3312 37 1 2.2792 -2.8438 -0.6575 38 1 0.2770 -0.4248 -2.4018 39 1 1.2696 -1.7994 -2.9446 40 1 0.2777 -1.9438 -1.4739 41 1 2.4469 -1.6472 -4.3751 42 1 4.1461 -2.0950 -4.0911 43 1 2.9450 -2.2914 -2.7923 44 1 4.4629 1.5707 -3.5700 45 1 3.9332 -0.5613 -5.7634 46 1 3.8965 1.2485 -5.9332 47 1 7.4564 -0.6747 -6.2209 48 1 5.9067 -1.5495 -6.1796 49 1 6.9877 -1.7689 -8.6385 50 1 7.6224 -3.0366 -11.6603 51 1 6.6256 0.4244 -3.4353 52 1 5.8967 -1.1540 -3.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754580869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:27 Heat of formation + Delta-G solvation = -50.541109 kcal Electronic energy + Delta-G solvation = -30477.589051 eV Core-core repulsion = 26477.465306 eV Total energy + Delta-G solvation = -4000.123745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27666 -41.07278 -39.62396 -38.42123 -36.34578 -35.88818 -33.33320 -32.78511 -32.23796 -30.86194 -28.20481 -27.45401 -27.10130 -26.36670 -26.17123 -25.03356 -22.54559 -21.72195 -20.97916 -20.23824 -19.90376 -19.28104 -18.03455 -17.83853 -17.69527 -16.85876 -16.72404 -16.57188 -16.25327 -15.72549 -15.68455 -15.54545 -14.90392 -14.83961 -14.79979 -14.58053 -14.16634 -13.93738 -13.68551 -13.64029 -13.61892 -13.52216 -13.45870 -13.19846 -12.88838 -12.79994 -12.44983 -12.29396 -12.20567 -12.14264 -12.02767 -11.85364 -11.73787 -11.64535 -11.52099 -11.51122 -11.49082 -11.25914 -10.62689 -10.36232 -10.03112 -9.78156 -9.71144 -8.47786 -5.96324 1.38437 1.40821 1.51324 1.54803 1.83586 2.03272 2.28156 2.80922 3.18339 3.22554 3.36295 3.48360 3.54037 3.65701 3.70567 4.01248 4.08031 4.15063 4.22830 4.29173 4.32359 4.38603 4.39092 4.43680 4.48935 4.54103 4.58583 4.59910 4.64174 4.66784 4.76331 4.78790 4.85649 4.94986 4.96000 5.01960 5.05924 5.08808 5.17915 5.21065 5.28769 5.32140 5.36336 5.39768 5.44773 5.45525 5.61311 5.83713 6.03458 6.35518 6.59034 7.11115 7.11660 7.54366 8.10659 8.69255 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025722 B = 0.002138 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.301002 B =13092.445284 C =13183.770985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.058 0.942 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.075 4.075 8 C -0.154 4.154 9 C 0.520 3.480 10 O -0.584 6.584 11 N -0.599 5.599 12 C 0.050 3.950 13 C 0.123 3.877 14 C 0.015 3.985 15 N -0.479 5.479 16 C 0.027 3.973 17 C 0.439 3.561 18 O -0.621 6.621 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.004 3.996 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.111 0.889 48 H 0.085 0.915 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.101 0.899 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 -8.002 24.542 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.077 0.923 4 C -0.151 4.151 5 C -0.164 4.164 6 C -0.152 4.152 7 C -0.078 4.078 8 C -0.211 4.211 9 C 0.310 3.690 10 O -0.464 6.464 11 N -0.330 5.330 12 C -0.091 4.091 13 C 0.018 3.982 14 C -0.115 4.115 15 N -0.202 5.202 16 C -0.105 4.105 17 C 0.226 3.774 18 O -0.507 6.507 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.193 1.193 27 H -0.197 1.197 28 C -0.125 4.125 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.103 0.897 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.119 0.881 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.632 -6.284 24.220 27.187 hybrid contribution 0.075 -0.266 -1.192 1.224 sum -10.557 -6.550 23.027 26.165 Atomic orbital electron populations 1.21948 0.93639 1.02825 1.01313 1.21792 0.96751 0.99384 0.93177 0.92309 1.22424 0.97603 0.98930 0.96178 1.22504 0.97241 1.00279 0.96355 1.22701 0.99622 0.96561 0.96345 1.21438 0.95659 0.95452 0.95262 1.22368 0.96473 1.01784 1.00476 1.21300 0.79234 0.87977 0.80456 1.90636 1.63933 1.20559 1.71239 1.47853 1.43686 1.15666 1.25845 1.22574 1.02540 0.81595 1.02393 1.22837 0.88905 0.96195 0.90280 1.24176 0.90258 1.02076 0.95007 1.68365 1.09631 1.39774 1.02440 1.22343 1.03244 0.95010 0.89858 1.20740 0.83530 0.85371 0.87724 1.90508 1.46998 1.27178 1.86001 1.41908 1.51484 1.22403 1.05120 1.19585 1.36436 1.07406 0.82924 0.90590 1.26000 0.96039 0.95319 1.03728 1.69651 1.38577 1.13000 1.34647 0.85024 0.78679 0.78033 0.76821 1.19969 1.19313 1.19691 1.24493 0.96955 1.01100 0.89989 0.92548 0.93573 0.90267 0.92207 0.89459 0.93535 0.89269 0.90531 0.87389 0.93214 0.90230 0.88596 0.91603 0.90327 0.86532 0.88012 0.90084 0.91750 0.87083 0.89745 0.76886 0.91231 0.88088 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.88 71.98 0.57 -1.30 16 2 C -0.09 -1.57 3.10 -10.07 -0.03 -1.60 16 3 H 0.06 1.46 6.39 -2.39 -0.02 1.45 16 4 C -0.11 -1.44 6.36 31.67 0.20 -1.24 16 5 C -0.13 -1.53 6.91 31.89 0.22 -1.31 16 6 C -0.12 -1.22 4.48 31.67 0.14 -1.08 16 7 C -0.07 -1.18 0.61 -52.20 -0.03 -1.22 16 8 C -0.15 -1.83 6.86 71.98 0.49 -1.34 16 9 C 0.52 12.61 6.44 87.65 0.56 13.17 16 10 O -0.58 -19.56 14.69 -3.05 -0.04 -19.61 16 11 N -0.60 -12.94 3.01 -826.85 -2.49 -15.43 16 12 C 0.05 0.70 6.72 127.77 0.86 1.56 16 13 C 0.12 3.31 4.41 46.56 0.21 3.51 16 14 C 0.01 0.46 6.25 86.37 0.54 1.00 16 15 N -0.48 -15.80 5.95 -912.21 -5.42 -21.22 16 16 C 0.03 0.91 5.31 85.56 0.45 1.37 16 17 C 0.44 20.88 7.59 87.66 0.67 21.54 16 18 O -0.62 -34.93 15.13 -3.08 -0.05 -34.98 16 19 N -0.57 -29.08 5.29 -306.98 -1.62 -30.70 16 20 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 23 N -0.92 -48.86 13.05 21.66 0.28 -48.57 16 24 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 C 0.00 0.09 7.51 86.41 0.65 0.74 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.71 6.82 -2.39 -0.02 0.70 16 31 H 0.08 0.71 6.65 -2.39 -0.02 0.69 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.77 7.85 -2.39 -0.02 0.75 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.83 6.00 -2.39 -0.01 0.81 16 37 H 0.11 0.59 7.84 -2.39 -0.02 0.57 16 38 H 0.05 0.75 6.78 -2.39 -0.02 0.74 16 39 H 0.08 0.80 4.45 -2.39 -0.01 0.79 16 40 H 0.10 0.69 6.68 -2.39 -0.02 0.67 16 41 H 0.07 0.92 7.36 -2.39 -0.02 0.90 16 42 H 0.08 1.00 6.52 -2.38 -0.02 0.99 16 43 H 0.12 1.03 3.49 -2.39 -0.01 1.03 16 44 H 0.10 3.29 7.20 -2.39 -0.02 3.28 16 45 H 0.08 2.37 6.52 -2.39 -0.02 2.35 16 46 H 0.06 2.48 8.10 -2.38 -0.02 2.46 16 47 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 48 H 0.08 2.31 7.70 -2.39 -0.02 2.29 16 49 H 0.40 18.95 7.90 -92.70 -0.73 18.22 16 50 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 51 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 52 H 0.10 1.81 6.45 -2.39 -0.02 1.79 16 Total: -1.00 -75.22 388.63 -0.33 -75.55 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: 0.21 Total: 34.53 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.78 Total: 15.60 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -9.25 Total: -115.92 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -0.09 Total: -54.59 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -75.22 -0.33 -75.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754580869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.004 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds