Wall clock time and date at job start Tue Mar 31 2020 20:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.01737 * 2 1 4 4 C 1.54272 * 110.03507 * 238.61259 * 2 1 3 5 5 C 1.55009 * 104.13706 * 217.07100 * 4 2 1 6 6 C 1.54893 * 102.75766 * 37.94582 * 5 4 2 7 7 C 1.53876 * 110.03470 * 121.39448 * 2 1 3 8 8 C 1.52998 * 110.02871 * 0.04446 * 7 2 1 9 9 C 1.50697 * 110.02968 * 238.66987 * 7 2 1 10 10 O 1.21285 * 120.00495 * 4.08315 * 9 7 2 11 11 N 1.34780 * 119.99601 * 184.08695 * 9 7 2 12 12 C 1.46502 * 119.99804 * 184.91759 * 11 9 7 13 13 C 1.46494 * 120.00149 * 4.91906 * 11 9 7 14 14 C 1.53933 * 113.73352 * 221.81316 * 13 11 9 15 15 N 1.48196 * 86.10298 * 221.95921 * 14 13 11 16 16 C 1.46891 * 111.07343 * 137.52267 * 15 14 13 17 17 C 1.50702 * 109.47377 * 70.56571 * 16 15 14 18 18 O 1.21295 * 119.99763 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00152 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99704 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99933 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99506 * 180.02562 * 20 19 17 23 23 N 1.31402 * 120.00225 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99607 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46928 * 59.99485 * 24 22 20 26 26 H 1.48491 * 109.46835 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46624 * 299.99597 * 24 22 20 28 28 C 1.47965 * 90.79699 * 24.60038 * 15 14 13 29 29 H 1.08999 * 109.47209 * 299.29744 * 1 2 3 30 30 H 1.09006 * 109.46731 * 59.30001 * 1 2 3 31 31 H 1.08996 * 109.47149 * 179.29238 * 1 2 3 32 32 H 1.09006 * 110.47848 * 335.73541 * 4 2 1 33 33 H 1.08999 * 110.48781 * 98.37545 * 4 2 1 34 34 H 1.08999 * 110.76195 * 279.62727 * 5 4 2 35 35 H 1.09000 * 110.90478 * 156.33397 * 5 4 2 36 36 H 1.08999 * 110.48595 * 203.37363 * 6 5 4 37 37 H 1.08995 * 110.48473 * 80.72334 * 6 5 4 38 38 H 1.09008 * 109.47052 * 65.82396 * 8 7 2 39 39 H 1.08998 * 109.47334 * 185.82234 * 8 7 2 40 40 H 1.08999 * 109.47466 * 305.82327 * 8 7 2 41 41 H 1.09002 * 109.47144 * 93.78954 * 12 11 9 42 42 H 1.09004 * 109.47117 * 213.78966 * 12 11 9 43 43 H 1.09006 * 109.47340 * 333.79220 * 12 11 9 44 44 H 1.09001 * 112.93869 * 353.38183 * 13 11 9 45 45 H 1.08995 * 113.76086 * 336.23635 * 14 13 11 46 46 H 1.09008 * 113.75899 * 107.60840 * 14 13 11 47 47 H 1.09000 * 109.47412 * 190.57010 * 16 15 14 48 48 H 1.09004 * 109.47240 * 310.56936 * 16 15 14 49 49 H 0.96996 * 120.00124 * 359.97438 * 19 17 16 50 50 H 0.97001 * 120.00094 * 179.97438 * 23 22 20 51 51 H 1.08997 * 113.75383 * 221.08606 * 28 15 14 52 52 H 1.08995 * 113.85738 * 89.73547 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0585 -0.7549 -1.2373 5 6 3.3150 -1.4996 -0.7182 6 6 2.8885 -1.9397 0.7043 7 6 2.0571 -0.7531 1.2340 8 6 0.8862 -1.2670 2.0740 9 6 2.9256 0.1580 2.0626 10 8 3.0532 1.3231 1.7509 11 7 3.5606 -0.3220 3.1503 12 6 4.3172 0.5854 4.0166 13 6 3.4943 -1.7509 3.4661 14 6 3.2945 -2.0458 4.9636 15 7 4.2961 -3.1228 4.7817 16 6 5.2459 -3.1555 5.9018 17 6 4.5464 -3.6566 7.1390 18 8 3.3723 -3.9574 7.0921 19 7 5.2255 -3.7706 8.2976 20 6 4.5892 -4.2270 9.4230 21 1 3.5438 -4.4948 9.3812 22 6 5.2892 -4.3440 10.6176 23 7 6.5611 -4.0177 10.6686 24 14 4.4225 -4.9665 12.1509 25 1 3.9024 -6.3354 11.9041 26 1 5.3824 -4.9988 13.2834 27 1 3.2938 -4.0607 12.4836 28 6 4.8741 -2.4167 3.6168 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5247 -0.8837 31 1 -0.3633 -1.0275 -0.0127 32 1 1.3145 -1.4658 -1.5968 33 1 2.3289 -0.0527 -2.0259 34 1 4.1718 -0.8274 -0.6739 35 1 3.5378 -2.3666 -1.3402 36 1 3.7646 -2.1020 1.3321 37 1 2.2788 -2.8419 0.6578 38 1 0.3379 -2.0216 1.5098 39 1 1.2660 -1.7075 2.9959 40 1 0.2203 -0.4383 2.3148 41 1 3.6804 0.9218 4.8349 42 1 5.1837 0.0627 4.4218 43 1 4.6504 1.4469 3.4378 44 1 2.8117 -2.2984 2.8162 45 1 3.6291 -1.2411 5.6182 46 1 2.2969 -2.4094 5.2103 47 1 6.0733 -3.8215 5.6572 48 1 5.6291 -2.1512 6.0827 49 1 6.1645 -3.5304 8.3351 50 1 7.0496 -4.0990 11.5026 51 1 5.1362 -3.0762 2.7895 52 1 5.6719 -1.7204 3.8748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754580870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:38 Heat of formation + Delta-G solvation = -50.012663 kcal Electronic energy + Delta-G solvation = -30872.587365 eV Core-core repulsion = 26872.486535 eV Total energy + Delta-G solvation = -4000.100830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43913 -40.91376 -39.54411 -38.64571 -36.15129 -35.74333 -33.29813 -32.80202 -32.20688 -31.20312 -28.20400 -27.43643 -27.18364 -26.25116 -26.04851 -25.09815 -22.49884 -21.60803 -20.98539 -20.58745 -19.92630 -19.34862 -17.90347 -17.85594 -17.48675 -16.88772 -16.63163 -16.41925 -16.33993 -15.73193 -15.66720 -15.51810 -15.08011 -14.90619 -14.74717 -14.50285 -14.26502 -14.04755 -13.82641 -13.57020 -13.54200 -13.45909 -13.25422 -13.06699 -12.86615 -12.81658 -12.46203 -12.43024 -12.21541 -12.18348 -12.13156 -11.91030 -11.71450 -11.61652 -11.51704 -11.49512 -11.45987 -11.25900 -10.66516 -10.33656 -10.01947 -9.77973 -9.75903 -8.46935 -5.95451 1.39125 1.41296 1.50223 1.51847 1.82861 2.05049 2.28574 2.82028 3.19235 3.23339 3.33968 3.45119 3.49610 3.63305 3.68841 3.95288 4.07731 4.23495 4.23749 4.28201 4.34539 4.40406 4.42303 4.45905 4.46305 4.54046 4.55374 4.59603 4.65414 4.66193 4.76803 4.83243 4.87111 4.90154 4.94697 5.01823 5.05351 5.08100 5.14692 5.21585 5.28468 5.31568 5.35898 5.40013 5.40860 5.45266 5.61317 5.83158 6.03735 6.29110 6.59659 7.06529 7.12474 7.55897 8.11341 8.70198 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.002302 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.030768 B =12161.567270 C =12269.079858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.124 4.124 7 C -0.079 4.079 8 C -0.150 4.150 9 C 0.524 3.476 10 O -0.577 6.577 11 N -0.600 5.600 12 C 0.076 3.924 13 C 0.110 3.890 14 C 0.005 3.995 15 N -0.466 5.466 16 C 0.025 3.975 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.007 4.007 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.153 0.847 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.076 0.924 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.118 0.882 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 6.006 -22.563 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.162 4.162 7 C -0.082 4.082 8 C -0.207 4.207 9 C 0.314 3.686 10 O -0.456 6.456 11 N -0.331 5.331 12 C -0.066 4.066 13 C 0.006 3.994 14 C -0.125 4.125 15 N -0.189 5.189 16 C -0.107 4.107 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.137 4.137 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.170 0.830 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.130 0.870 48 H 0.094 0.906 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.136 0.864 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.343 5.745 -22.617 23.939 hybrid contribution 0.709 0.923 1.651 2.020 sum -4.634 6.668 -20.966 22.483 Atomic orbital electron populations 1.21959 0.93756 1.02695 1.01467 1.21770 0.96676 0.99446 0.92805 0.91685 1.22454 0.97484 0.98961 0.96245 1.22505 0.97392 1.00335 0.95850 1.22869 0.99760 0.96573 0.96976 1.21455 0.95496 0.95652 0.95591 1.22272 0.96725 1.02076 0.99624 1.21097 0.79121 0.88150 0.80241 1.90620 1.64337 1.19907 1.70768 1.47860 1.50860 1.08512 1.25893 1.21704 0.96377 0.94317 0.94219 1.23699 0.99074 0.80258 0.96377 1.24263 0.99033 0.93042 0.96191 1.68391 1.09275 1.37616 1.03659 1.22342 0.96226 1.02010 0.90111 1.20711 0.87720 0.83528 0.85219 1.90495 1.18157 1.55736 1.85787 1.41941 1.12758 1.58396 1.08121 1.19603 0.96421 1.42094 0.88045 0.90325 1.26012 0.96314 0.97247 1.01669 1.69657 1.08796 1.48464 1.29220 0.85021 0.77854 0.78769 0.76916 1.19689 1.19566 1.19749 1.24634 0.96546 0.97037 0.95434 0.93346 0.92231 0.90778 0.89751 0.91688 0.93031 0.89407 0.90523 0.88182 0.88756 0.92153 0.92125 0.92777 0.89931 0.90715 0.83010 0.91562 0.90352 0.86953 0.90643 0.77050 0.91324 0.86367 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.87 71.98 0.57 -1.47 16 2 C -0.09 -1.56 3.09 -10.07 -0.03 -1.59 16 3 H 0.06 1.56 6.40 -2.39 -0.02 1.54 16 4 C -0.11 -1.54 6.37 31.71 0.20 -1.34 16 5 C -0.12 -1.66 6.91 31.93 0.22 -1.44 16 6 C -0.12 -1.76 4.45 31.67 0.14 -1.61 16 7 C -0.08 -1.42 0.61 -52.21 -0.03 -1.45 16 8 C -0.15 -2.45 6.89 71.98 0.50 -1.96 16 9 C 0.52 12.75 6.46 87.66 0.57 13.32 16 10 O -0.58 -18.10 14.72 -3.04 -0.04 -18.15 16 11 N -0.60 -13.22 3.08 -826.79 -2.55 -15.77 16 12 C 0.08 1.63 9.12 127.77 1.17 2.80 16 13 C 0.11 2.28 1.71 46.56 0.08 2.36 16 14 C 0.00 0.13 6.29 86.36 0.54 0.67 16 15 N -0.47 -13.47 5.95 -912.11 -5.42 -18.90 16 16 C 0.02 0.80 5.31 85.56 0.45 1.26 16 17 C 0.44 20.28 7.59 87.66 0.67 20.95 16 18 O -0.62 -32.97 15.13 -3.08 -0.05 -33.02 16 19 N -0.57 -28.87 5.29 -306.97 -1.62 -30.50 16 20 C -0.33 -18.59 9.68 84.04 0.81 -17.78 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.17 13.05 21.66 0.28 -48.88 16 24 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 C -0.01 -0.15 7.09 86.41 0.61 0.47 16 29 H 0.05 0.78 6.64 -2.39 -0.02 0.77 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 0.83 6.85 -2.39 -0.02 0.82 16 32 H 0.08 0.88 7.85 -2.38 -0.02 0.86 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.13 4.85 -2.39 -0.01 1.12 16 37 H 0.10 1.09 7.75 -2.39 -0.02 1.07 16 38 H 0.09 1.14 6.92 -2.38 -0.02 1.12 16 39 H 0.06 1.09 5.36 -2.39 -0.01 1.08 16 40 H 0.06 1.07 6.39 -2.39 -0.02 1.05 16 41 H 0.05 1.19 8.05 -2.39 -0.02 1.17 16 42 H 0.08 1.50 6.45 -2.38 -0.02 1.49 16 43 H 0.07 1.70 7.25 -2.38 -0.02 1.68 16 44 H 0.15 2.79 3.46 -2.39 -0.01 2.79 16 45 H 0.07 1.94 6.66 -2.39 -0.02 1.92 16 46 H 0.08 2.56 8.10 -2.38 -0.02 2.54 16 47 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 48 H 0.08 2.11 7.70 -2.38 -0.02 2.09 16 49 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 50 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 51 H 0.12 1.87 7.83 -2.39 -0.02 1.85 16 52 H 0.09 1.53 6.26 -2.39 -0.01 1.52 16 Total: -1.00 -70.48 387.87 -0.23 -70.71 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.21 Total: 36.97 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.93 Total: 12.96 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -9.31 Total: -114.05 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.09 Total: -51.17 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.48 -0.23 -70.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754580870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.697 kcal (2) G-P(sol) polarization free energy of solvation -70.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds