Wall clock time and date at job start Tue Mar 31 2020 22:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 115.55047 * 2 1 4 4 C 1.53078 * 117.51228 * 145.71584 * 2 1 3 5 5 C 1.52998 * 117.49995 * 214.32679 * 2 1 3 6 6 H 1.08995 * 117.49741 * 359.97438 * 5 2 1 7 7 C 1.50695 * 117.49858 * 144.99765 * 5 2 1 8 8 O 1.21281 * 120.00236 * 359.91626 * 7 5 2 9 9 N 1.34773 * 120.00137 * 179.91040 * 7 5 2 10 10 C 1.46505 * 120.00561 * 175.31109 * 9 7 5 11 11 H 1.09004 * 109.47017 * 38.39826 * 10 9 7 12 12 C 1.52996 * 109.47693 * 158.40268 * 10 9 7 13 13 N 1.46902 * 109.46778 * 303.34216 * 12 10 9 14 14 C 1.46896 * 110.99961 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47427 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99728 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00339 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00239 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99608 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00280 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99963 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00396 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47058 * 89.99259 * 22 20 18 24 24 H 1.48493 * 109.47391 * 210.00096 * 22 20 18 25 25 H 1.48503 * 109.46879 * 330.00104 * 22 20 18 26 26 C 1.53004 * 109.46693 * 278.40133 * 10 9 7 27 27 C 1.54261 * 110.03327 * 299.06882 * 26 10 9 28 28 C 1.54890 * 104.19711 * 217.10673 * 27 26 10 29 29 C 1.54886 * 102.74851 * 37.94240 * 28 27 26 30 30 C 1.53877 * 110.02905 * 181.90112 * 26 10 9 31 31 H 1.08998 * 109.47134 * 205.67383 * 1 2 3 32 32 H 1.08999 * 109.47645 * 325.67654 * 1 2 3 33 33 H 1.09001 * 109.47324 * 85.67430 * 1 2 3 34 34 H 1.08991 * 117.51145 * 0.02562 * 4 2 1 35 35 H 1.08995 * 117.49197 * 214.96497 * 4 2 1 36 36 H 0.97005 * 120.00234 * 355.30967 * 9 7 5 37 37 H 1.08998 * 109.46996 * 63.33921 * 12 10 9 38 38 H 1.08996 * 109.47280 * 183.34423 * 12 10 9 39 39 H 1.00903 * 111.00115 * 303.95418 * 13 12 10 40 40 H 1.09005 * 109.47318 * 299.99656 * 14 13 12 41 41 H 1.09000 * 109.47584 * 59.99583 * 14 13 12 42 42 H 0.96996 * 119.99582 * 359.97438 * 17 15 14 43 43 H 0.96995 * 120.00537 * 180.02562 * 21 20 18 44 44 H 1.09005 * 110.01485 * 60.51603 * 26 10 9 45 45 H 1.08995 * 110.48784 * 335.78921 * 27 26 10 46 46 H 1.09005 * 110.48248 * 98.42896 * 27 26 10 47 47 H 1.09005 * 110.75550 * 279.62817 * 28 27 26 48 48 H 1.08992 * 110.75645 * 156.26204 * 28 27 26 49 49 H 1.08996 * 110.48795 * 203.38291 * 29 28 27 50 50 H 1.09001 * 110.48355 * 80.73666 * 29 28 27 51 51 H 1.08997 * 110.03544 * 238.56729 * 30 26 10 52 52 H 1.08997 * 110.03622 * 0.02562 * 30 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1218 0.7648 5 6 2.2364 -1.1207 -0.7653 6 1 1.6112 -1.8583 -1.2684 7 6 3.5289 -0.7805 -1.4614 8 8 3.9704 0.3475 -1.4031 9 7 4.1943 -1.7299 -2.1487 10 6 5.3951 -1.3770 -2.9102 11 1 5.9754 -0.6412 -2.3533 12 6 6.2429 -2.6305 -3.1357 13 7 6.5677 -3.2415 -1.8399 14 6 7.3834 -4.4502 -2.0175 15 6 7.6955 -5.0482 -0.6699 16 8 7.2798 -4.5192 0.3392 17 7 8.4375 -6.1702 -0.5860 18 6 8.7219 -6.7139 0.6400 19 1 8.3517 -6.2428 1.5386 20 6 9.4863 -7.8709 0.7265 21 7 9.9363 -8.4444 -0.3669 22 14 9.8732 -8.6122 2.3969 23 1 8.8117 -9.5830 2.7655 24 1 11.1830 -9.3093 2.3378 25 1 9.9324 -7.5331 3.4155 26 6 4.9869 -0.7875 -4.2618 27 6 4.1841 -1.8270 -5.0710 28 6 4.6424 -1.6059 -6.5339 29 6 6.1538 -1.3056 -6.3769 30 6 6.2393 -0.4559 -5.0921 31 1 -0.3633 -0.9262 0.4452 32 1 -0.3634 0.8487 0.5794 33 1 -0.3634 0.0775 -1.0247 34 1 1.6123 -1.8599 1.2675 35 1 3.1722 -0.8760 1.2678 36 1 3.8782 -2.6469 -2.1393 37 1 5.6842 -3.3424 -3.7433 38 1 7.1644 -2.3582 -3.6502 39 1 7.0293 -2.5800 -1.2338 40 1 6.8330 -5.1750 -2.6175 41 1 8.3128 -4.1902 -2.5242 42 1 8.7702 -6.5930 -1.3931 43 1 10.4697 -9.2523 -0.3066 44 1 4.3897 0.1120 -4.1115 45 1 4.4287 -2.8372 -4.7431 46 1 3.1142 -1.6421 -4.9743 47 1 4.1236 -0.7558 -6.9769 48 1 4.4871 -2.5066 -7.1276 49 1 6.5213 -0.7403 -7.2332 50 1 6.7165 -2.2318 -6.2600 51 1 6.2494 0.6041 -5.3456 52 1 7.1378 -0.7154 -4.5324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754651236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:03 Heat of formation + Delta-G solvation = -68.570250 kcal Electronic energy + Delta-G solvation = -29692.787226 eV Core-core repulsion = 25691.881679 eV Total energy + Delta-G solvation = -4000.905547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.37581 -38.94748 -38.19919 -36.77740 -35.67108 -34.12683 -33.60941 -31.24952 -30.62480 -28.95954 -28.74358 -27.84525 -25.58970 -24.42488 -23.37010 -22.33865 -21.11663 -20.70517 -19.95622 -19.43685 -18.97007 -17.90397 -17.47139 -16.79413 -15.90748 -15.79294 -15.59280 -15.17216 -14.82626 -14.58470 -14.47501 -14.24968 -13.99688 -13.89030 -13.59520 -13.43275 -13.27699 -13.09434 -12.85475 -12.65276 -12.15238 -11.95513 -11.78245 -11.61487 -11.56184 -11.50372 -11.43226 -11.25501 -11.21860 -11.08119 -11.04215 -10.69402 -10.46906 -10.40583 -10.35620 -10.22996 -10.20410 -9.71784 -9.52187 -8.91595 -8.48124 -8.09647 -7.97381 -6.43128 -3.83928 2.56576 3.14171 3.16873 3.25596 3.31529 3.74550 3.89340 4.03322 4.25116 4.41232 4.47146 4.53168 4.63301 4.66901 4.73865 4.87027 5.03093 5.09759 5.14141 5.15662 5.21965 5.28602 5.28711 5.40412 5.41656 5.46432 5.48824 5.52639 5.54118 5.61776 5.65677 5.72841 5.76647 5.81013 5.84559 5.85617 5.90542 5.92560 5.94766 6.10460 6.14190 6.15845 6.23894 6.24803 6.58315 7.14385 7.53925 7.58702 7.64133 8.04906 8.33556 8.59865 9.16686 9.52893 10.04387 10.74647 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.002776 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.950001 B =10085.380996 C =12623.746403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 H 0.115 0.885 4 C -0.145 4.145 5 C -0.189 4.189 6 H 0.121 0.879 7 C 0.546 3.454 8 O -0.551 6.551 9 N -0.702 5.702 10 C 0.158 3.842 11 H 0.084 0.916 12 C 0.045 3.955 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.100 4.100 27 C -0.121 4.121 28 C -0.125 4.125 29 C -0.124 4.124 30 C -0.121 4.121 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.406 0.594 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.350 0.650 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 13.393 -11.481 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 H 0.133 0.867 4 C -0.183 4.183 5 C -0.210 4.210 6 H 0.138 0.862 7 C 0.333 3.667 8 O -0.429 6.429 9 N -0.351 5.351 10 C 0.052 3.948 11 H 0.102 0.898 12 C -0.085 4.085 13 N -0.298 5.298 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.120 4.120 27 C -0.158 4.158 28 C -0.162 4.162 29 C -0.162 4.162 30 C -0.159 4.159 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.241 0.759 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.170 0.830 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.082 0.918 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.453 14.023 -10.739 22.823 hybrid contribution 1.264 -0.942 -0.064 1.577 sum -13.189 13.082 -10.804 21.489 Atomic orbital electron populations 1.21389 0.92459 1.02168 1.01953 1.22368 0.94979 0.95094 1.02034 0.86684 1.23110 1.03173 1.01062 0.90929 1.22284 0.97768 1.04903 0.96092 0.86155 1.19589 0.84568 0.84736 0.77819 1.90664 1.68683 1.21573 1.61983 1.45701 1.27729 1.11903 1.49790 1.20944 0.86090 0.96469 0.91274 0.89819 1.22417 0.98496 0.95426 0.92164 1.60070 1.49740 1.08281 1.11749 1.21671 0.95908 0.93384 0.97220 1.19800 0.83895 0.83703 0.90013 1.90531 1.56045 1.62957 1.37045 1.41863 1.45911 1.22853 1.09447 1.19696 1.29962 1.07107 0.86070 0.87951 1.25256 0.96902 0.96796 0.98987 1.69606 1.36325 1.20795 1.27646 0.85862 0.77674 0.79108 0.81685 1.20381 1.20934 1.19412 1.22141 0.96915 0.98913 0.94062 1.22487 0.99390 0.99372 0.94558 1.22489 0.95883 1.01140 0.96729 1.22360 0.96547 0.99901 0.97364 1.22219 0.97734 0.99968 0.95983 0.92343 0.91826 0.92148 0.87822 0.88074 0.75873 0.90064 0.93690 0.83044 0.89662 0.93903 0.77496 0.91875 0.90443 0.90884 0.91987 0.91793 0.91693 0.91895 0.91509 0.91808 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.19 37.15 0.38 -0.54 16 2 C -0.13 -1.26 5.92 -90.58 -0.54 -1.80 16 3 H 0.12 1.33 7.67 -51.93 -0.40 0.93 16 4 C -0.15 -1.52 9.88 -26.69 -0.26 -1.79 16 5 C -0.19 -2.01 5.91 -91.77 -0.54 -2.56 16 6 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 7 C 0.55 7.21 7.53 -10.99 -0.08 7.13 16 8 O -0.55 -9.10 15.95 5.56 0.09 -9.01 16 9 N -0.70 -8.16 4.51 -53.80 -0.24 -8.41 16 10 C 0.16 1.79 1.92 -67.93 -0.13 1.66 16 11 H 0.08 1.14 7.62 -51.93 -0.40 0.74 16 12 C 0.04 0.51 4.67 -3.83 -0.02 0.49 16 13 N -0.67 -10.12 5.89 -115.06 -0.68 -10.80 16 14 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 15 C 0.44 10.21 7.82 -10.98 -0.09 10.13 16 16 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 17 N -0.56 -14.14 5.29 -10.96 -0.06 -14.19 16 18 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 22 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.10 -0.98 2.91 -89.50 -0.26 -1.25 16 27 C -0.12 -1.03 5.84 -25.07 -0.15 -1.18 16 28 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 29 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 30 C -0.12 -1.07 5.94 -25.61 -0.15 -1.22 16 31 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.41 4.39 8.58 -40.82 -0.35 4.04 16 37 H 0.08 0.85 5.93 -51.93 -0.31 0.54 16 38 H 0.05 0.48 6.47 -51.93 -0.34 0.15 16 39 H 0.35 5.89 8.43 -39.29 -0.33 5.55 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.63 5.65 -51.93 -0.29 0.33 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.07 0.62 6.20 -51.93 -0.32 0.30 16 LS Contribution 416.65 15.07 6.28 6.28 Total: -1.00 -32.07 416.65 -10.17 -42.24 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -8.89 Total: 17.49 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.45 Total: -0.33 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.25 Total: -57.10 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.18 Total: -24.56 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.07 -10.17 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754651236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.330 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds