Wall clock time and date at job start Tue Mar 31 2020 22:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 115.55047 * 2 1 4 4 C 1.53078 * 117.51228 * 145.71584 * 2 1 3 5 5 C 1.52998 * 117.49995 * 214.32679 * 2 1 3 6 6 H 1.08995 * 117.49741 * 359.97438 * 5 2 1 7 7 C 1.50695 * 117.49858 * 144.99765 * 5 2 1 8 8 O 1.21281 * 120.00236 * 359.91626 * 7 5 2 9 9 N 1.34773 * 120.00137 * 179.91040 * 7 5 2 10 10 C 1.46505 * 120.00561 * 175.31109 * 9 7 5 11 11 H 1.09004 * 109.47017 * 38.39826 * 10 9 7 12 12 C 1.52996 * 109.47693 * 158.40268 * 10 9 7 13 13 N 1.46902 * 109.46778 * 303.34216 * 12 10 9 14 14 C 1.46896 * 110.99961 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47427 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99728 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00339 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00239 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99608 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00280 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99963 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00396 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47058 * 89.99259 * 22 20 18 24 24 H 1.48493 * 109.47391 * 210.00096 * 22 20 18 25 25 H 1.48503 * 109.46879 * 330.00104 * 22 20 18 26 26 C 1.53004 * 109.46693 * 278.40133 * 10 9 7 27 27 C 1.54261 * 110.03327 * 299.06882 * 26 10 9 28 28 C 1.54890 * 104.19711 * 217.10673 * 27 26 10 29 29 C 1.54886 * 102.74851 * 37.94240 * 28 27 26 30 30 C 1.53877 * 110.02905 * 181.90112 * 26 10 9 31 31 H 1.08998 * 109.47134 * 205.67383 * 1 2 3 32 32 H 1.08999 * 109.47645 * 325.67654 * 1 2 3 33 33 H 1.09001 * 109.47324 * 85.67430 * 1 2 3 34 34 H 1.08991 * 117.51145 * 0.02562 * 4 2 1 35 35 H 1.08995 * 117.49197 * 214.96497 * 4 2 1 36 36 H 0.97005 * 120.00234 * 355.30967 * 9 7 5 37 37 H 1.08998 * 109.46996 * 63.33921 * 12 10 9 38 38 H 1.08996 * 109.47280 * 183.34423 * 12 10 9 39 39 H 1.00903 * 111.00115 * 303.95418 * 13 12 10 40 40 H 1.09005 * 109.47318 * 299.99656 * 14 13 12 41 41 H 1.09000 * 109.47584 * 59.99583 * 14 13 12 42 42 H 0.96996 * 119.99582 * 359.97438 * 17 15 14 43 43 H 0.96995 * 120.00537 * 180.02562 * 21 20 18 44 44 H 1.09005 * 110.01485 * 60.51603 * 26 10 9 45 45 H 1.08995 * 110.48784 * 335.78921 * 27 26 10 46 46 H 1.09005 * 110.48248 * 98.42896 * 27 26 10 47 47 H 1.09005 * 110.75550 * 279.62817 * 28 27 26 48 48 H 1.08992 * 110.75645 * 156.26204 * 28 27 26 49 49 H 1.08996 * 110.48795 * 203.38291 * 29 28 27 50 50 H 1.09001 * 110.48355 * 80.73666 * 29 28 27 51 51 H 1.08997 * 110.03544 * 238.56729 * 30 26 10 52 52 H 1.08997 * 110.03622 * 0.02562 * 30 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1218 0.7648 5 6 2.2364 -1.1207 -0.7653 6 1 1.6112 -1.8583 -1.2684 7 6 3.5289 -0.7805 -1.4614 8 8 3.9704 0.3475 -1.4031 9 7 4.1943 -1.7299 -2.1487 10 6 5.3951 -1.3770 -2.9102 11 1 5.9754 -0.6412 -2.3533 12 6 6.2429 -2.6305 -3.1357 13 7 6.5677 -3.2415 -1.8399 14 6 7.3834 -4.4502 -2.0175 15 6 7.6955 -5.0482 -0.6699 16 8 7.2798 -4.5192 0.3392 17 7 8.4375 -6.1702 -0.5860 18 6 8.7219 -6.7139 0.6400 19 1 8.3517 -6.2428 1.5386 20 6 9.4863 -7.8709 0.7265 21 7 9.9363 -8.4444 -0.3669 22 14 9.8732 -8.6122 2.3969 23 1 8.8117 -9.5830 2.7655 24 1 11.1830 -9.3093 2.3378 25 1 9.9324 -7.5331 3.4155 26 6 4.9869 -0.7875 -4.2618 27 6 4.1841 -1.8270 -5.0710 28 6 4.6424 -1.6059 -6.5339 29 6 6.1538 -1.3056 -6.3769 30 6 6.2393 -0.4559 -5.0921 31 1 -0.3633 -0.9262 0.4452 32 1 -0.3634 0.8487 0.5794 33 1 -0.3634 0.0775 -1.0247 34 1 1.6123 -1.8599 1.2675 35 1 3.1722 -0.8760 1.2678 36 1 3.8782 -2.6469 -2.1393 37 1 5.6842 -3.3424 -3.7433 38 1 7.1644 -2.3582 -3.6502 39 1 7.0293 -2.5800 -1.2338 40 1 6.8330 -5.1750 -2.6175 41 1 8.3128 -4.1902 -2.5242 42 1 8.7702 -6.5930 -1.3931 43 1 10.4697 -9.2523 -0.3066 44 1 4.3897 0.1120 -4.1115 45 1 4.4287 -2.8372 -4.7431 46 1 3.1142 -1.6421 -4.9743 47 1 4.1236 -0.7558 -6.9769 48 1 4.4871 -2.5066 -7.1276 49 1 6.5213 -0.7403 -7.2332 50 1 6.7165 -2.2318 -6.2600 51 1 6.2494 0.6041 -5.3456 52 1 7.1378 -0.7154 -4.5324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754651236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:59 Heat of formation + Delta-G solvation = -90.380362 kcal Electronic energy + Delta-G solvation = -29693.732983 eV Core-core repulsion = 25691.881679 eV Total energy + Delta-G solvation = -4001.851305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35250 -40.17157 -39.67000 -37.65258 -36.83458 -35.91125 -34.94199 -33.25555 -31.58324 -29.64268 -29.42777 -29.08693 -27.05600 -25.70389 -24.61673 -23.23850 -21.92588 -21.39433 -21.14321 -20.84797 -20.05430 -19.80657 -18.49456 -17.95177 -17.36372 -16.87005 -16.58621 -16.36041 -16.33528 -15.88991 -15.63356 -15.52409 -15.09377 -14.97631 -14.76515 -14.55569 -14.14131 -14.10860 -14.04604 -13.65080 -13.53757 -13.15409 -13.04260 -12.91796 -12.75976 -12.65772 -12.41609 -12.36527 -12.21204 -12.12917 -11.91685 -11.88282 -11.86819 -11.50532 -11.35352 -11.30848 -11.18292 -11.04050 -10.74421 -10.34569 -10.00929 -9.91486 -9.34470 -8.46686 -5.95058 1.37724 1.41687 1.54032 1.54840 2.06497 2.20231 2.29026 2.87325 2.89066 3.20928 3.49058 3.62949 3.66922 3.78945 3.83372 3.86550 3.90079 4.01376 4.20919 4.23035 4.33766 4.40662 4.41825 4.52626 4.56859 4.60096 4.63292 4.64191 4.72392 4.77584 4.83123 4.86452 4.88444 4.94934 5.00715 5.06152 5.09553 5.12347 5.20218 5.28819 5.36213 5.41067 5.42223 5.45518 5.51520 5.63366 5.86133 6.08453 6.28788 6.60757 6.65001 7.13368 7.32544 7.57273 8.12986 8.70693 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.002776 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.950001 B =10085.380996 C =12623.746403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.122 4.122 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.192 4.192 6 H 0.147 0.853 7 C 0.538 3.462 8 O -0.592 6.592 9 N -0.694 5.694 10 C 0.161 3.839 11 H 0.056 0.944 12 C 0.053 3.947 13 N -0.676 5.676 14 C 0.066 3.934 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.092 4.092 27 C -0.117 4.117 28 C -0.122 4.122 29 C -0.121 4.121 30 C -0.122 4.122 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.338 0.662 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.061 0.939 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 12.181 -12.972 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.141 4.141 3 H 0.111 0.889 4 C -0.186 4.186 5 C -0.213 4.213 6 H 0.165 0.835 7 C 0.326 3.674 8 O -0.474 6.474 9 N -0.343 5.343 10 C 0.055 3.945 11 H 0.074 0.926 12 C -0.075 4.075 13 N -0.307 5.307 14 C -0.066 4.066 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.113 4.113 27 C -0.154 4.154 28 C -0.159 4.159 29 C -0.159 4.159 30 C -0.160 4.160 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.249 0.751 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.156 0.844 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.090 0.910 51 H 0.080 0.920 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.287 12.782 -12.279 23.406 hybrid contribution 1.528 -0.489 0.391 1.652 sum -13.759 12.293 -11.888 21.949 Atomic orbital electron populations 1.21389 0.90063 1.03216 1.02730 1.22394 0.96641 0.93797 1.01297 0.88925 1.23136 1.02687 1.02023 0.90795 1.22386 0.96908 1.05959 0.96023 0.83520 1.20101 0.85341 0.84304 0.77640 1.90640 1.69918 1.23282 1.63532 1.45701 1.27445 1.11945 1.49201 1.20903 0.85809 0.96005 0.91742 0.92617 1.22450 0.99210 0.95363 0.90526 1.60076 1.49209 1.07853 1.13600 1.21541 0.97652 0.94149 0.93263 1.20917 0.81966 0.82563 0.92041 1.90505 1.57202 1.63845 1.39445 1.41923 1.46680 1.23658 1.08805 1.19632 1.31723 1.08360 0.86507 0.90515 1.25998 0.96137 0.96566 1.02483 1.69659 1.36279 1.21065 1.29084 0.84964 0.78047 0.78145 0.77419 1.19572 1.19548 1.19932 1.22025 0.97403 0.98398 0.93426 1.22461 0.99120 0.98845 0.94957 1.22485 0.95628 1.01749 0.96067 1.22358 0.96792 0.99894 0.96810 1.22228 0.96958 1.00290 0.96490 0.91065 0.91067 0.91422 0.85703 0.90433 0.75111 0.88162 0.92247 0.84400 0.87158 0.91626 0.76935 0.91304 0.92619 0.90387 0.92007 0.91712 0.90540 0.91074 0.91036 0.91973 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 10.19 71.98 0.73 -0.83 16 2 C -0.12 -2.44 5.92 -10.77 -0.06 -2.50 16 3 H 0.09 2.27 7.67 -2.38 -0.02 2.25 16 4 C -0.15 -3.12 9.88 30.62 0.30 -2.81 16 5 C -0.19 -4.00 5.91 -11.54 -0.07 -4.07 16 6 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 7 C 0.54 14.59 7.53 87.66 0.66 15.25 16 8 O -0.59 -20.69 15.95 -3.03 -0.05 -20.74 16 9 N -0.69 -16.05 4.51 -442.53 -2.00 -18.04 16 10 C 0.16 3.63 1.92 44.99 0.09 3.72 16 11 H 0.06 1.59 7.62 -2.39 -0.02 1.57 16 12 C 0.05 1.11 4.67 86.30 0.40 1.51 16 13 N -0.68 -19.86 5.89 -517.95 -3.05 -22.91 16 14 C 0.07 2.11 6.17 85.56 0.53 2.64 16 15 C 0.44 20.30 7.82 87.66 0.69 20.99 16 16 O -0.62 -34.25 15.78 -3.05 -0.05 -34.30 16 17 N -0.57 -28.89 5.29 -306.99 -1.62 -30.51 16 18 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 22 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C -0.09 -1.76 2.91 -10.07 -0.03 -1.79 16 27 C -0.12 -1.76 5.84 31.67 0.18 -1.57 16 28 C -0.12 -1.58 6.91 31.88 0.22 -1.36 16 29 C -0.12 -1.62 6.83 31.67 0.22 -1.40 16 30 C -0.12 -2.02 5.94 31.32 0.19 -1.84 16 31 H 0.07 0.79 7.90 -2.39 -0.02 0.77 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 2.05 8.05 -2.39 -0.02 2.03 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.41 8.47 8.58 -92.70 -0.80 7.67 16 37 H 0.10 1.77 5.93 -2.39 -0.01 1.76 16 38 H 0.06 1.13 6.47 -2.39 -0.02 1.11 16 39 H 0.34 11.44 8.43 -89.69 -0.76 10.69 16 40 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 43 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 44 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.08 1.11 5.65 -2.39 -0.01 1.10 16 46 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.07 1.13 6.20 -2.39 -0.01 1.12 16 Total: -1.00 -71.30 416.65 -0.47 -71.77 By element: Atomic # 1 Polarization: 52.35 SS G_CDS: -1.34 Total: 51.01 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.32 Total: 7.80 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -6.39 Total: -120.32 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -0.10 Total: -55.04 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.30 -0.47 -71.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754651236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.612 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds