Wall clock time and date at job start Tue Mar 31 2020 19:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.47176 * 2 1 4 4 O 1.21284 * 119.99957 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00013 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99942 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.46718 * 180.02562 * 6 5 3 8 8 O 1.21270 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99436 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.63269 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.77598 * 126.37751 * 10 9 7 12 12 C 1.53040 * 109.31324 * 54.62921 * 11 10 9 13 13 C 1.53034 * 109.54181 * 298.63736 * 12 11 10 14 14 H 1.09003 * 109.52480 * 301.39925 * 13 12 11 15 15 C 1.52995 * 109.49742 * 181.31660 * 13 12 11 16 16 H 1.08998 * 110.91810 * 302.60990 * 15 13 12 17 17 C 1.55158 * 111.00553 * 66.51496 * 15 13 12 18 18 C 1.54339 * 103.02072 * 153.38102 * 17 15 13 19 19 N 1.47021 * 107.26633 * 338.13723 * 18 17 15 20 20 C 1.36931 * 125.64962 * 178.85047 * 19 18 17 21 21 H 1.08002 * 120.00438 * 179.69777 * 20 19 18 22 22 C 1.38817 * 119.99680 * 359.41735 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.47426 * 108.70417 * 358.58904 * 19 18 17 29 29 C 1.46927 * 120.62758 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.46844 * 59.99967 * 1 2 3 31 31 H 1.08996 * 109.47188 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.46803 * 299.99843 * 1 2 3 33 33 H 1.09004 * 109.46641 * 240.00346 * 2 1 3 34 34 H 1.09000 * 109.46806 * 120.00589 * 2 1 3 35 35 H 0.97000 * 120.00293 * 0.02562 * 5 3 2 36 36 H 1.08996 * 109.46976 * 60.00607 * 6 5 3 37 37 H 1.08992 * 109.46952 * 300.00046 * 6 5 3 38 38 H 1.09003 * 109.58336 * 246.15928 * 10 9 7 39 39 H 1.08994 * 109.58637 * 6.58240 * 10 9 7 40 40 H 1.09004 * 109.49748 * 174.58731 * 11 10 9 41 41 H 1.09003 * 109.49084 * 294.68325 * 11 10 9 42 42 H 1.09007 * 109.45646 * 178.61656 * 12 11 10 43 43 H 1.09001 * 109.45697 * 58.66419 * 12 11 10 44 44 H 1.09000 * 110.71528 * 271.93993 * 17 15 13 45 45 H 1.08994 * 110.71626 * 35.03308 * 17 15 13 46 46 H 1.09000 * 109.98868 * 218.66271 * 18 17 15 47 47 H 1.09001 * 109.77953 * 97.49455 * 18 17 15 48 48 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.37118 * 143.18886 * 28 19 18 50 50 H 1.09001 * 110.36564 * 265.51518 * 28 19 18 51 51 H 1.09003 * 109.58559 * 113.83874 * 29 9 7 52 52 H 1.09003 * 109.58750 * 353.41209 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0483 0.0011 7 6 5.3529 3.0482 0.0010 8 8 5.9592 1.9979 0.0009 9 7 6.0267 4.2154 0.0019 10 6 5.3061 5.4958 0.0037 11 6 5.8145 6.3461 1.1722 12 6 7.3359 6.4811 1.0756 13 6 7.9797 5.0960 1.1702 14 1 7.6964 4.6261 2.1120 15 6 9.5020 5.2350 1.1065 16 1 9.8085 5.7430 0.1921 17 6 10.0463 5.9697 2.3601 18 6 11.4872 5.4301 2.4810 19 7 11.5353 4.1490 1.7614 20 6 12.6433 3.3583 1.6126 21 1 12.5740 2.4284 1.0677 22 6 13.8571 3.7547 2.1573 23 7 13.9416 4.8879 2.8213 24 14 15.3704 2.6798 1.9477 25 1 15.0125 1.4679 1.1677 26 1 16.4220 3.4407 1.2264 27 1 15.8795 2.2760 3.2830 28 6 10.1915 3.8534 1.2320 29 6 7.4959 4.2315 0.0013 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.9878 0.9298 0.0005 36 1 3.4823 3.5618 0.8911 37 1 3.4828 3.5623 -0.8888 38 1 5.4883 6.0189 -0.9352 39 1 4.2380 5.3138 0.1217 40 1 5.3580 7.3350 1.1282 41 1 5.5511 5.8647 2.1140 42 1 7.6976 7.1062 1.8921 43 1 7.6000 6.9401 0.1228 44 1 10.0478 7.0485 2.2044 45 1 9.4627 5.7097 3.2431 46 1 11.7405 5.2759 3.5299 47 1 12.1845 6.1356 2.0290 48 1 14.7896 5.1648 3.2023 49 1 10.2653 3.3762 0.2547 50 1 9.6421 3.2168 1.9255 51 1 7.8563 4.6516 -0.9378 52 1 7.8726 3.2153 0.1178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755203297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:00 Heat of formation + Delta-G solvation = -62.238506 kcal Electronic energy + Delta-G solvation = -29754.217238 eV Core-core repulsion = 25753.586256 eV Total energy + Delta-G solvation = -4000.630982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -40.77450 -39.78824 -38.38746 -36.79696 -34.80819 -33.77521 -33.14253 -32.33823 -31.25511 -29.32823 -28.49860 -27.06618 -25.45788 -24.63174 -24.03161 -22.79880 -21.10073 -20.72057 -19.89952 -19.53354 -19.26175 -17.92678 -17.01015 -16.72176 -16.49474 -16.38728 -15.63446 -15.37538 -15.01376 -14.59078 -14.54836 -14.27403 -14.09430 -13.88262 -13.80658 -13.36114 -13.23877 -13.04572 -12.67493 -12.61899 -12.38699 -12.12268 -12.11010 -12.02642 -11.81071 -11.53283 -11.29006 -11.06355 -11.02263 -10.85204 -10.74130 -10.63528 -10.25965 -10.21201 -10.05753 -9.95763 -9.79574 -9.74110 -9.55345 -9.52731 -8.81477 -8.56845 -6.78167 -5.67652 -3.00442 2.24096 2.33142 2.44639 3.03226 3.41704 3.47351 3.49813 4.05656 4.37938 4.48436 4.55162 4.69196 4.70769 4.71916 4.76605 4.88709 4.93661 4.94983 5.09749 5.16815 5.20346 5.38114 5.44274 5.48321 5.49625 5.56391 5.60284 5.64160 5.69252 5.74033 5.82624 5.86154 5.91653 5.94678 6.00074 6.04640 6.22673 6.24532 6.37594 6.45050 6.58413 6.61561 6.76817 7.00968 7.09388 7.14664 7.60838 7.67414 7.80536 7.86694 7.87172 8.30368 9.26617 9.87128 10.53642 11.44187 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002196 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.372684 B =12750.187252 C =14084.160758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.544 6.544 5 N -0.721 5.721 6 C 0.101 3.899 7 C 0.508 3.492 8 O -0.536 6.536 9 N -0.604 5.604 10 C 0.102 3.898 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.086 4.086 14 H 0.073 0.927 15 C -0.095 4.095 16 H 0.074 0.926 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.607 5.607 20 C -0.225 4.225 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.141 3.859 29 C 0.115 3.885 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.413 0.587 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.039 0.961 47 H 0.045 0.955 48 H 0.250 0.750 49 H 0.036 0.964 50 H 0.017 0.983 51 H 0.070 0.930 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.225 -0.587 -6.169 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.422 6.422 5 N -0.376 5.376 6 C -0.027 4.027 7 C 0.295 3.705 8 O -0.413 6.413 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.173 4.173 12 C -0.153 4.153 13 C -0.106 4.106 14 H 0.092 0.908 15 C -0.115 4.115 16 H 0.093 0.907 17 C -0.174 4.174 18 C 0.052 3.948 19 N -0.333 5.333 20 C -0.353 4.353 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.014 3.986 29 C -0.007 4.007 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.251 0.749 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.035 0.965 51 H 0.088 0.912 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.220 -0.489 -6.118 25.957 hybrid contribution 1.297 -0.668 0.003 1.459 sum -23.923 -1.157 -6.115 24.720 Atomic orbital electron populations 1.21533 0.92845 1.01709 1.03362 1.21628 0.98685 0.93308 1.04752 1.20840 0.81474 0.92204 0.75396 1.90704 1.55317 1.46575 1.49558 1.45830 1.07777 1.08276 1.75752 1.21096 0.91388 0.85625 1.04558 1.20449 0.89582 0.83927 0.76512 1.90717 1.69701 1.30764 1.50111 1.48094 1.07739 1.05462 1.72445 1.21863 0.96335 0.84170 0.99684 1.21934 0.97141 0.99914 0.98340 1.21588 0.93740 0.97252 1.02692 1.21476 0.95492 0.95208 0.98404 0.90814 1.22318 0.91465 0.98629 0.99082 0.90734 1.22887 0.99618 0.98643 0.96262 1.21134 0.89720 0.87174 0.96748 1.44494 1.04293 1.22007 1.62487 1.19123 0.86206 1.00857 1.29119 0.90447 1.24804 0.97750 0.97623 1.00529 1.69983 1.24401 1.22020 1.40687 0.86050 0.83102 0.79421 0.77265 1.20507 1.21814 1.21817 1.21582 0.87151 0.93381 0.96456 1.21837 0.77279 1.02819 0.98720 0.91979 0.91954 0.91945 0.88668 0.88624 0.74886 0.88418 0.88491 0.90756 0.89819 0.90543 0.91410 0.91031 0.91712 0.92420 0.92735 0.94237 0.93671 0.93912 0.94536 0.96531 0.91172 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.16 0.34 -0.53 16 2 C -0.14 -0.88 6.42 -27.88 -0.18 -1.06 16 3 C 0.51 4.84 7.83 -10.99 -0.09 4.76 16 4 O -0.54 -6.91 15.98 5.55 0.09 -6.82 16 5 N -0.72 -6.51 5.53 -61.47 -0.34 -6.85 16 6 C 0.10 0.90 4.50 -5.19 -0.02 0.87 16 7 C 0.51 5.75 7.77 -10.98 -0.09 5.66 16 8 O -0.54 -7.89 15.08 5.57 0.08 -7.80 16 9 N -0.60 -6.27 2.97 -172.75 -0.51 -6.79 16 10 C 0.10 0.75 6.34 -3.71 -0.02 0.72 16 11 C -0.14 -1.04 6.08 -26.61 -0.16 -1.20 16 12 C -0.12 -1.15 5.04 -26.69 -0.13 -1.28 16 13 C -0.09 -1.10 1.85 -90.49 -0.17 -1.26 16 14 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 15 C -0.09 -1.56 2.57 -88.47 -0.23 -1.79 16 16 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.14 -2.45 5.58 -24.89 -0.14 -2.59 16 18 C 0.18 4.33 5.38 -3.06 -0.02 4.31 16 19 N -0.61 -15.75 3.39 -170.06 -0.58 -16.32 16 20 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -27.52 10.31 55.49 0.57 -26.95 16 24 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C 0.14 2.91 5.74 -2.52 -0.01 2.90 16 29 C 0.11 1.43 5.41 -3.69 -0.02 1.41 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.41 3.58 7.44 -40.82 -0.30 3.28 16 36 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 37 H 0.10 0.77 7.94 -51.93 -0.41 0.36 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.75 7.46 -51.92 -0.39 0.36 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 45 H 0.05 0.94 8.01 -51.93 -0.42 0.53 16 46 H 0.04 1.08 7.53 -51.93 -0.39 0.68 16 47 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.10 1.46 6.42 -51.93 -0.33 1.13 16 LS Contribution 403.39 15.07 6.08 6.08 Total: -1.00 -34.59 403.39 -10.02 -44.61 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -9.21 Total: -0.58 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.19 Total: 3.94 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.86 Total: -56.91 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.17 Total: -14.62 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.59 -10.02 -44.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755203297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.627 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds