Wall clock time and date at job start Tue Mar 31 2020 19:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47011 * 2 1 4 4 O 1.21277 * 120.00023 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00003 * 180.02562 * 3 2 1 6 6 C 1.46491 * 120.00091 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.46957 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46931 * 120.63086 * 0.02562 * 9 7 6 11 11 C 1.53622 * 108.54424 * 126.36867 * 10 9 7 12 12 C 1.53036 * 109.24613 * 54.85288 * 11 10 9 13 13 C 1.53046 * 109.53689 * 298.51382 * 12 11 10 14 14 H 1.08997 * 109.49431 * 301.40868 * 13 12 11 15 15 C 1.52997 * 109.52033 * 181.33097 * 13 12 11 16 16 H 1.09000 * 110.64504 * 300.84237 * 15 13 12 17 17 C 1.55157 * 110.72025 * 177.70480 * 15 13 12 18 18 C 1.54903 * 101.58453 * 206.13548 * 17 15 13 19 19 N 1.47425 * 104.83387 * 37.00909 * 18 17 15 20 20 C 1.36938 * 125.65161 * 155.91549 * 19 18 17 21 21 H 1.07997 * 120.00070 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99789 * 359.96568 * 20 19 18 23 23 N 1.31621 * 120.00296 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99838 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47279 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47111 * 120.00403 * 24 22 20 27 27 H 1.48507 * 109.46997 * 240.00450 * 24 22 20 28 28 C 1.47315 * 108.73506 * 335.71534 * 19 18 17 29 29 C 1.46925 * 120.62933 * 180.27723 * 9 7 6 30 30 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46714 * 299.99790 * 1 2 3 32 32 H 1.09000 * 109.47263 * 59.99136 * 1 2 3 33 33 H 1.08998 * 109.46547 * 240.00633 * 2 1 3 34 34 H 1.08994 * 109.47099 * 120.00444 * 2 1 3 35 35 H 0.97003 * 119.99349 * 0.02562 * 5 3 2 36 36 H 1.09004 * 109.47166 * 60.00164 * 6 5 3 37 37 H 1.08994 * 109.47507 * 299.99870 * 6 5 3 38 38 H 1.09000 * 109.58052 * 246.19939 * 10 9 7 39 39 H 1.08995 * 109.58699 * 6.62138 * 10 9 7 40 40 H 1.09003 * 109.63253 * 294.86246 * 11 10 9 41 41 H 1.08996 * 109.45752 * 174.74562 * 11 10 9 42 42 H 1.08995 * 109.46232 * 178.49380 * 12 11 10 43 43 H 1.09000 * 109.46110 * 58.53189 * 12 11 10 44 44 H 1.09005 * 111.00460 * 324.21159 * 17 15 13 45 45 H 1.08996 * 111.00604 * 88.05761 * 17 15 13 46 46 H 1.09000 * 110.36771 * 155.84776 * 18 17 15 47 47 H 1.09007 * 110.36863 * 278.16947 * 18 17 15 48 48 H 0.97000 * 120.00330 * 179.97438 * 23 22 20 49 49 H 1.09001 * 110.06808 * 241.87526 * 28 19 18 50 50 H 1.08994 * 109.85124 * 120.61068 * 28 19 18 51 51 H 1.08994 * 109.58707 * 353.37218 * 29 9 7 52 52 H 1.09003 * 109.58629 * 113.80427 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0000 7 6 5.3528 3.0482 -0.0001 8 8 5.9592 1.9979 -0.0011 9 7 6.0267 4.2154 -0.0053 10 6 5.3061 5.4959 -0.0102 11 6 5.8197 6.3501 1.1587 12 6 7.3406 6.4848 1.0550 13 6 7.9848 5.0999 1.1514 14 1 7.7051 4.6336 2.0961 15 6 9.5069 5.2381 1.0810 16 1 9.8067 5.7154 0.1480 17 6 10.1914 3.8541 1.2341 18 6 11.5733 4.2525 1.8096 19 7 11.2932 5.3794 2.7180 20 6 12.0712 5.7628 3.7777 21 1 11.7784 6.6062 4.3853 22 6 13.2362 5.0672 4.0708 23 7 13.5932 4.0395 3.3301 24 14 14.2971 5.5897 5.5168 25 1 13.6803 6.7639 6.1846 26 1 14.4014 4.4685 6.4849 27 1 15.6529 5.9517 5.0307 28 6 10.0402 6.0283 2.2946 29 6 7.4958 4.2315 -0.0116 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.9877 0.9298 -0.0013 36 1 3.4829 3.5616 0.8906 37 1 3.4820 3.5626 -0.8894 38 1 5.4877 6.0136 -0.9521 39 1 4.2380 5.3146 0.1094 40 1 5.5604 5.8719 2.1034 41 1 5.3629 7.3387 1.1141 42 1 7.7058 7.1125 1.8678 43 1 7.6005 6.9404 0.0996 44 1 9.6440 3.2228 1.9341 45 1 10.2979 3.3618 0.2676 46 1 12.0088 3.4196 2.3615 47 1 12.2413 4.5683 1.0082 48 1 14.4075 3.5537 3.5347 49 1 10.2327 7.0622 2.0081 50 1 9.3138 5.9955 3.1065 51 1 7.8729 3.2158 0.1073 52 1 7.8526 4.6481 -0.9535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755203299.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:14 Heat of formation + Delta-G solvation = -83.474070 kcal Electronic energy + Delta-G solvation = -29741.726189 eV Core-core repulsion = 25740.174364 eV Total energy + Delta-G solvation = -4001.551825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62848 -40.60679 -39.65225 -38.04883 -35.59622 -35.22572 -33.77279 -33.59976 -32.54300 -30.73859 -29.79931 -28.40214 -26.64495 -26.06240 -24.70345 -23.85445 -22.30602 -21.69508 -21.41064 -20.74862 -20.09107 -18.89522 -18.62241 -17.75909 -17.37099 -17.11807 -16.85316 -16.49511 -16.27232 -16.00851 -15.63000 -15.36062 -15.09638 -14.86525 -14.76189 -14.33651 -14.18725 -14.01330 -13.96339 -13.64033 -13.44897 -13.37442 -13.28328 -13.12780 -12.85745 -12.76642 -12.62165 -12.44399 -12.08367 -12.08306 -12.01590 -11.95802 -11.80421 -11.68922 -11.41779 -11.35217 -11.06643 -10.99518 -10.89521 -10.74745 -10.25990 -9.68954 -8.88501 -7.78174 -5.22529 1.40669 1.44415 1.45754 1.56077 1.60598 1.67569 2.32915 2.48513 3.29779 3.31211 3.63923 3.70187 3.78109 3.80823 3.92110 4.06311 4.17620 4.20300 4.22223 4.25696 4.30460 4.31482 4.37455 4.42877 4.57015 4.60983 4.70891 4.74711 4.78252 4.84852 4.88864 4.90602 4.97136 5.02022 5.08038 5.08443 5.15750 5.17128 5.23004 5.35599 5.39044 5.39915 5.45399 5.50448 5.54600 5.66021 5.82057 6.28351 6.30690 6.44700 6.95806 7.10212 7.16333 7.78572 8.42928 9.23927 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.002069 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.880027 B =13526.604324 C =14142.099367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.511 3.489 4 O -0.581 6.581 5 N -0.720 5.720 6 C 0.105 3.895 7 C 0.507 3.493 8 O -0.576 6.576 9 N -0.602 5.602 10 C 0.099 3.901 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.075 4.075 14 H 0.053 0.947 15 C -0.076 4.076 16 H 0.086 0.914 17 C -0.124 4.124 18 C 0.153 3.847 19 N -0.630 5.630 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.072 4.072 23 N -0.950 5.950 24 Si 0.981 3.019 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.141 3.859 29 C 0.122 3.878 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.415 0.585 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.079 0.921 46 H 0.067 0.933 47 H -0.013 1.013 48 H 0.246 0.754 49 H 0.024 0.976 50 H 0.022 0.978 51 H 0.072 0.928 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.632 -1.750 -10.893 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.299 3.701 4 O -0.461 6.461 5 N -0.375 5.375 6 C -0.022 4.022 7 C 0.295 3.705 8 O -0.456 6.456 9 N -0.334 5.334 10 C -0.022 4.022 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.094 4.094 14 H 0.071 0.929 15 C -0.095 4.095 16 H 0.104 0.896 17 C -0.163 4.163 18 C 0.027 3.973 19 N -0.356 5.356 20 C -0.366 4.366 21 H 0.098 0.902 22 C -0.264 4.264 23 N -0.601 5.601 24 Si 0.809 3.191 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.016 3.984 29 C 0.000 4.000 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.254 0.746 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.005 0.995 48 H 0.056 0.944 49 H 0.042 0.958 50 H 0.040 0.960 51 H 0.091 0.909 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.700 -1.654 -10.790 27.922 hybrid contribution 1.680 -0.101 0.965 1.940 sum -24.020 -1.755 -9.825 26.011 Atomic orbital electron populations 1.21537 0.93122 1.02676 1.02072 1.21704 0.98360 0.91376 1.06539 1.21426 0.81102 0.93188 0.74342 1.90685 1.56080 1.47930 1.51405 1.45895 1.07847 1.08451 1.75318 1.21126 0.89465 0.86004 1.05623 1.20834 0.90455 0.83514 0.75649 1.90695 1.70615 1.32202 1.52070 1.48151 1.07044 1.06548 1.71655 1.22233 0.97155 0.82519 1.00314 1.21977 0.95211 1.01403 0.98164 1.21604 0.95461 0.95079 1.03134 1.21326 0.92863 0.97217 0.98037 0.92873 1.22042 0.94118 0.95448 0.97898 0.89574 1.22866 0.96541 0.96653 1.00239 1.21699 0.92971 0.91631 0.90953 1.44944 1.24361 1.34120 1.32172 1.19515 1.01968 1.10908 1.04233 0.90153 1.25679 0.99798 0.98621 1.02327 1.70089 1.25280 1.23004 1.41690 0.84967 0.78179 0.77467 0.78468 1.18992 1.21891 1.21846 1.21509 0.87162 0.94915 0.94781 1.21580 0.78748 1.01030 0.98691 0.89813 0.93365 0.93165 0.86612 0.86892 0.74626 0.87620 0.86950 0.88638 0.87656 0.92409 0.87980 0.92022 0.90189 0.93055 0.90225 0.91500 0.99513 0.94420 0.95812 0.95987 0.90912 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.20 71.98 0.66 -0.89 16 2 C -0.14 -1.44 6.42 29.85 0.19 -1.24 16 3 C 0.51 8.91 7.83 87.66 0.69 9.59 16 4 O -0.58 -14.22 15.98 -3.02 -0.05 -14.27 16 5 N -0.72 -11.88 5.53 -466.81 -2.58 -14.46 16 6 C 0.10 1.66 4.50 85.64 0.39 2.05 16 7 C 0.51 10.59 7.77 87.66 0.68 11.27 16 8 O -0.58 -16.33 15.08 -3.04 -0.05 -16.38 16 9 N -0.60 -11.07 2.97 -818.13 -2.43 -13.50 16 10 C 0.10 1.11 6.37 86.51 0.55 1.66 16 11 C -0.13 -1.70 6.10 30.82 0.19 -1.51 16 12 C -0.12 -2.14 5.01 30.62 0.15 -1.99 16 13 C -0.07 -1.85 1.71 -10.73 -0.02 -1.87 16 14 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 15 C -0.08 -2.43 2.49 -9.60 -0.02 -2.45 16 16 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 17 C -0.12 -4.75 5.60 31.98 0.18 -4.57 16 18 C 0.15 7.79 5.89 86.85 0.51 8.30 16 19 N -0.63 -33.34 3.40 -691.24 -2.35 -35.69 16 20 C -0.24 -13.64 10.28 84.03 0.86 -12.78 16 21 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 22 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 23 N -0.95 -58.28 10.09 21.65 0.22 -58.06 16 24 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 C 0.14 5.76 5.91 86.67 0.51 6.27 16 29 C 0.12 2.74 5.41 86.35 0.47 3.20 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.68 8.10 -2.38 -0.02 0.66 16 32 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 33 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.42 6.62 7.44 -92.71 -0.69 5.93 16 36 H 0.11 1.54 7.70 -2.38 -0.02 1.52 16 37 H 0.11 1.46 7.93 -2.39 -0.02 1.45 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 0.78 5.94 -2.39 -0.01 0.77 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 1.31 7.29 -2.39 -0.02 1.29 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 2.03 8.05 -2.38 -0.02 2.02 16 45 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.07 3.93 5.88 -2.39 -0.01 3.91 16 47 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 49 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.02 0.90 7.68 -2.39 -0.02 0.88 16 51 H 0.07 2.03 6.43 -2.39 -0.02 2.01 16 52 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.53 402.38 1.46 -76.07 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.21 Total: 16.34 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.46 Total: 11.30 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -7.14 Total: -121.71 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.09 Total: -30.65 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -77.53 1.46 -76.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755203299.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.406 kcal (2) G-P(sol) polarization free energy of solvation -77.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds