Wall clock time and date at job start Tue Mar 31 2020 19:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46950 * 2 1 4 4 O 1.21279 * 120.00193 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99880 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99792 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.46701 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00436 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99971 * 179.97438 * 7 6 5 10 10 C 1.46920 * 120.62767 * 0.02562 * 9 7 6 11 11 C 1.53199 * 108.77681 * 233.58168 * 10 9 7 12 12 C 1.53042 * 109.31184 * 305.36669 * 11 10 9 13 13 C 1.53043 * 109.53712 * 61.36203 * 12 11 10 14 14 H 1.08999 * 109.49582 * 58.61659 * 13 12 11 15 15 C 1.52999 * 109.49465 * 178.68390 * 13 12 11 16 16 H 1.08999 * 110.88794 * 63.88443 * 15 13 12 17 17 C 1.55155 * 111.00558 * 299.99627 * 15 13 12 18 18 C 1.54322 * 102.94686 * 206.38864 * 17 15 13 19 19 N 1.47027 * 107.26711 * 22.19452 * 18 17 15 20 20 C 1.36933 * 125.64361 * 181.02428 * 19 18 17 21 21 H 1.08008 * 119.99841 * 173.95405 * 20 19 18 22 22 C 1.38807 * 120.00636 * 353.95412 * 20 19 18 23 23 N 1.31619 * 119.99583 * 6.85877 * 22 20 19 24 24 Si 1.86796 * 120.00502 * 186.85860 * 22 20 19 25 25 H 1.48495 * 109.47358 * 94.98334 * 24 22 20 26 26 H 1.48506 * 109.47418 * 214.98538 * 24 22 20 27 27 H 1.48506 * 109.46851 * 334.98270 * 24 22 20 28 28 C 1.47420 * 108.70308 * 1.28479 * 19 18 17 29 29 C 1.46928 * 120.63066 * 179.97438 * 9 7 6 30 30 H 1.08999 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47143 * 300.00080 * 1 2 3 32 32 H 1.08999 * 109.46732 * 60.00475 * 1 2 3 33 33 H 1.08992 * 109.47435 * 239.99845 * 2 1 3 34 34 H 1.08999 * 109.46732 * 119.99525 * 2 1 3 35 35 H 0.96998 * 119.99878 * 359.97438 * 5 3 2 36 36 H 1.09000 * 109.47238 * 59.99980 * 6 5 3 37 37 H 1.08994 * 109.46749 * 299.99542 * 6 5 3 38 38 H 1.09003 * 109.59030 * 113.79406 * 10 9 7 39 39 H 1.08996 * 109.58941 * 353.36994 * 10 9 7 40 40 H 1.08999 * 109.49783 * 185.41189 * 11 10 9 41 41 H 1.08999 * 109.51944 * 65.33011 * 11 10 9 42 42 H 1.09002 * 109.46047 * 301.34615 * 12 11 10 43 43 H 1.08995 * 109.44562 * 181.37685 * 12 11 10 44 44 H 1.08999 * 110.71565 * 88.02490 * 17 15 13 45 45 H 1.09004 * 110.87370 * 324.82848 * 17 15 13 46 46 H 1.09003 * 109.87979 * 262.78270 * 18 17 15 47 47 H 1.08993 * 110.01458 * 141.68109 * 18 17 15 48 48 H 0.97005 * 119.99957 * 180.02562 * 23 22 20 49 49 H 1.09010 * 110.36379 * 94.48476 * 28 19 18 50 50 H 1.09000 * 110.36819 * 216.79835 * 28 19 18 51 51 H 1.08993 * 109.58525 * 6.63243 * 29 9 7 52 52 H 1.08999 * 109.58641 * 246.20503 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 5.3527 3.0484 -0.0010 8 8 5.9592 1.9981 -0.0009 9 7 6.0266 4.2156 -0.0019 10 6 5.3060 5.4959 -0.0026 11 6 5.8142 6.3472 -1.1705 12 6 7.3356 6.4822 -1.0740 13 6 7.9795 5.0971 -1.1697 14 1 7.6959 4.6285 -2.1121 15 6 9.5018 5.2362 -1.1061 16 1 9.8153 5.6389 -0.1430 17 6 10.0296 6.1114 -2.2734 18 6 11.4729 5.5996 -2.4641 19 7 11.5332 4.2432 -1.8998 20 6 12.6464 3.4473 -1.8525 21 1 12.6132 2.5029 -1.3296 22 6 13.8176 3.8542 -2.4766 23 7 13.9013 5.0603 -2.9969 24 14 15.2750 2.6901 -2.5781 25 1 15.2480 1.9755 -3.8795 26 1 16.5366 3.4653 -2.4652 27 1 15.1990 1.7041 -1.4702 28 6 10.1951 3.8797 -1.3991 29 6 7.4958 4.2317 -0.0013 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.9878 0.9299 -0.0005 36 1 3.4827 3.5625 0.8889 37 1 3.4821 3.5618 -0.8911 38 1 5.4881 6.0182 0.9367 39 1 4.2379 5.3140 -0.1207 40 1 5.3576 7.3359 -1.1257 41 1 5.5507 5.8671 -2.1129 42 1 7.5998 6.9403 -0.1208 43 1 7.6969 7.1078 -1.8901 44 1 10.0277 7.1656 -1.9964 45 1 9.4408 5.9504 -3.1765 46 1 12.1700 6.2515 -1.9374 47 1 11.7216 5.5711 -3.5249 48 1 14.7196 5.3446 -3.4333 49 1 9.6436 3.3254 -2.1586 50 1 10.2789 3.2916 -0.4852 51 1 7.8724 3.2156 -0.1186 52 1 7.8562 4.6511 0.9381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755203300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:25 Heat of formation + Delta-G solvation = -85.193472 kcal Electronic energy + Delta-G solvation = -29735.096143 eV Core-core repulsion = 25733.469758 eV Total energy + Delta-G solvation = -4001.626384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62406 -40.60011 -39.64595 -38.07096 -35.59382 -35.22672 -33.76640 -33.58885 -32.49630 -30.98190 -29.55174 -28.49471 -26.56874 -26.13654 -24.72793 -23.84760 -22.20560 -21.69752 -21.40995 -20.83845 -20.09749 -18.89025 -18.60627 -17.74782 -17.33393 -17.11943 -16.80893 -16.46308 -16.25350 -16.03977 -15.62939 -15.40711 -15.12583 -14.85338 -14.76787 -14.33754 -14.09649 -13.99749 -13.91824 -13.75662 -13.58734 -13.41237 -13.31889 -13.13297 -12.88111 -12.77093 -12.62187 -12.22376 -12.13754 -12.05974 -12.01748 -11.85576 -11.81310 -11.70002 -11.48169 -11.37206 -11.07234 -11.00028 -10.90495 -10.70897 -10.26006 -9.68354 -8.89830 -7.88174 -5.22365 1.40777 1.42771 1.45151 1.54047 1.60479 1.67614 2.32972 2.47540 3.29394 3.30448 3.61880 3.64919 3.80321 3.86162 3.94412 4.09613 4.16054 4.21945 4.22464 4.27478 4.29450 4.31353 4.33519 4.44499 4.55495 4.63305 4.69089 4.74543 4.80913 4.84945 4.90548 4.92822 4.97621 5.01939 5.07944 5.10180 5.13897 5.17302 5.23880 5.36582 5.39043 5.42798 5.44144 5.50308 5.56331 5.69885 5.77209 6.19336 6.28836 6.44457 6.96230 7.09304 7.16068 7.77062 8.42197 9.22618 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002184 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.607335 B =12814.735706 C =14162.634815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.511 3.489 4 O -0.581 6.581 5 N -0.720 5.720 6 C 0.106 3.894 7 C 0.506 3.494 8 O -0.577 6.577 9 N -0.601 5.601 10 C 0.098 3.902 11 C -0.130 4.130 12 C -0.113 4.113 13 C -0.074 4.074 14 H 0.059 0.941 15 C -0.076 4.076 16 H 0.080 0.920 17 C -0.118 4.118 18 C 0.181 3.819 19 N -0.630 5.630 20 C -0.245 4.245 21 H 0.078 0.922 22 C -0.067 4.067 23 N -0.949 5.949 24 Si 0.977 3.023 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.268 1.268 28 C 0.136 3.864 29 C 0.119 3.881 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.415 0.585 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.007 0.993 47 H 0.004 0.996 48 H 0.247 0.753 49 H 0.011 0.989 50 H 0.034 0.966 51 H 0.067 0.933 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.251 -0.678 7.807 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.300 3.700 4 O -0.461 6.461 5 N -0.376 5.376 6 C -0.021 4.021 7 C 0.295 3.705 8 O -0.457 6.457 9 N -0.333 5.333 10 C -0.024 4.024 11 C -0.168 4.168 12 C -0.151 4.151 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.096 4.096 16 H 0.098 0.902 17 C -0.156 4.156 18 C 0.056 3.944 19 N -0.356 5.356 20 C -0.374 4.374 21 H 0.096 0.904 22 C -0.260 4.260 23 N -0.597 5.597 24 Si 0.805 3.195 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.193 1.193 28 C 0.011 3.989 29 C -0.003 4.003 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.253 0.747 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.025 0.975 47 H 0.022 0.978 48 H 0.056 0.944 49 H 0.029 0.971 50 H 0.053 0.947 51 H 0.085 0.915 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -27.278 -0.558 7.762 28.366 hybrid contribution 1.931 -0.841 -0.460 2.156 sum -25.347 -1.398 7.301 26.415 Atomic orbital electron populations 1.21536 0.93089 1.02674 1.02090 1.21705 0.98386 0.91402 1.06514 1.21416 0.81089 0.93178 0.74346 1.90684 1.56062 1.47906 1.51405 1.45906 1.07855 1.08475 1.75318 1.21127 0.89356 0.85981 1.05671 1.20863 0.90497 0.83513 0.75664 1.90702 1.70652 1.32294 1.52091 1.48150 1.06925 1.06593 1.71651 1.22161 0.97176 0.82551 1.00487 1.21915 0.95330 1.01391 0.98119 1.21590 0.95267 0.94818 1.03376 1.21316 0.92660 0.97420 0.97959 0.92206 1.22223 0.93821 0.94810 0.98698 0.90187 1.22715 0.95203 0.99619 0.98044 1.20958 0.93136 0.84984 0.95346 1.44834 1.05523 1.14781 1.70467 1.19449 0.89532 1.00381 1.28047 0.90433 1.25687 1.01013 0.98600 1.00705 1.70207 1.27221 1.18400 1.43921 0.85074 0.78423 0.78028 0.77928 1.21479 1.21828 1.19279 1.21792 0.85408 0.96037 0.95643 1.21611 0.78888 1.00945 0.98888 0.89835 0.93177 0.93303 0.86878 0.86695 0.74662 0.87024 0.87408 0.88931 0.87652 0.87829 0.92094 0.90525 0.91041 0.89639 0.91597 0.97469 0.97788 0.94378 0.97073 0.94735 0.91459 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.20 71.98 0.66 -0.88 16 2 C -0.14 -1.45 6.42 29.85 0.19 -1.26 16 3 C 0.51 8.92 7.83 87.66 0.69 9.61 16 4 O -0.58 -14.15 15.98 -3.02 -0.05 -14.19 16 5 N -0.72 -11.99 5.53 -466.79 -2.58 -14.57 16 6 C 0.11 1.67 4.50 85.63 0.39 2.06 16 7 C 0.51 10.74 7.77 87.66 0.68 11.42 16 8 O -0.58 -16.85 15.08 -3.04 -0.05 -16.90 16 9 N -0.60 -11.18 2.97 -818.83 -2.43 -13.61 16 10 C 0.10 1.05 6.34 86.37 0.55 1.60 16 11 C -0.13 -1.50 6.08 30.67 0.19 -1.31 16 12 C -0.11 -1.88 4.97 30.62 0.15 -1.73 16 13 C -0.07 -1.76 1.86 -10.70 -0.02 -1.78 16 14 H 0.06 1.62 8.07 -2.39 -0.02 1.60 16 15 C -0.08 -2.41 2.58 -9.33 -0.02 -2.44 16 16 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 17 C -0.12 -4.14 5.27 31.78 0.17 -3.97 16 18 C 0.18 9.13 5.38 86.73 0.47 9.59 16 19 N -0.63 -33.71 3.39 -691.54 -2.35 -36.06 16 20 C -0.24 -14.35 10.26 84.03 0.86 -13.49 16 21 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 22 C -0.07 -3.95 5.48 84.86 0.47 -3.48 16 23 N -0.95 -58.57 10.36 21.65 0.22 -58.35 16 24 Si 0.98 47.15 29.56 68.60 2.03 49.18 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 C 0.14 5.76 6.07 86.93 0.53 6.29 16 29 C 0.12 2.78 5.50 86.38 0.48 3.26 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.42 6.76 7.44 -92.71 -0.69 6.07 16 36 H 0.11 1.47 7.94 -2.39 -0.02 1.45 16 37 H 0.11 1.52 7.69 -2.39 -0.02 1.51 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 0.74 5.93 -2.39 -0.01 0.72 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.25 7.21 -2.39 -0.02 1.23 16 44 H 0.09 2.56 8.09 -2.39 -0.02 2.54 16 45 H 0.07 2.19 8.04 -2.39 -0.02 2.17 16 46 H 0.01 0.40 7.55 -2.39 -0.02 0.38 16 47 H 0.00 0.22 7.36 -2.39 -0.02 0.20 16 48 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 49 H 0.01 0.50 7.99 -2.38 -0.02 0.48 16 50 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.07 2.00 6.62 -2.39 -0.02 1.99 16 52 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -79.17 403.41 1.42 -77.75 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.21 Total: 13.26 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.41 Total: 13.49 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -7.14 Total: -122.59 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.09 Total: -31.09 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -79.17 1.42 -77.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755203300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.444 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds