Wall clock time and date at job start Tue Mar 31 2020 20:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.50126 * 2 1 4 4 C 1.53042 * 109.49664 * 239.93484 * 2 1 3 5 5 C 1.53041 * 109.53679 * 178.68963 * 4 2 1 6 6 H 1.09002 * 109.52542 * 181.33501 * 5 4 2 7 7 C 1.53002 * 109.49632 * 301.41017 * 5 4 2 8 8 C 1.53192 * 109.31558 * 61.36249 * 5 4 2 9 9 N 1.46926 * 108.77517 * 305.36419 * 8 5 4 10 10 C 1.34776 * 120.63296 * 233.58178 * 9 8 5 11 11 O 1.21283 * 119.99472 * 0.02562 * 10 9 8 12 12 C 1.50693 * 119.99906 * 180.02562 * 10 9 8 13 13 N 1.46904 * 109.46968 * 182.46501 * 12 10 9 14 14 C 1.46901 * 111.00011 * 63.18090 * 13 12 10 15 15 C 1.53239 * 109.33824 * 172.74568 * 14 13 12 16 16 N 1.47079 * 108.52046 * 53.83188 * 15 14 13 17 17 C 1.34780 * 120.87739 * 128.83641 * 16 15 14 18 18 O 1.21696 * 119.99539 * 184.54546 * 17 16 15 19 19 C 1.46368 * 120.00218 * 4.54273 * 17 16 15 20 20 H 1.07998 * 120.00321 * 6.14216 * 19 17 16 21 21 C 1.40055 * 120.00051 * 186.14088 * 19 17 16 22 22 N 1.30673 * 119.99713 * 354.79679 * 21 19 17 23 23 Si 1.86793 * 120.00069 * 174.79936 * 21 19 17 24 24 H 1.48499 * 109.47233 * 94.99568 * 23 21 19 25 25 H 1.48498 * 109.47203 * 214.99504 * 23 21 19 26 26 H 1.48503 * 109.47108 * 334.99565 * 23 21 19 27 27 C 1.47069 * 118.23978 * 308.81356 * 16 15 14 28 28 C 1.46900 * 110.99940 * 298.88127 * 13 12 10 29 29 C 1.46930 * 118.73583 * 53.86227 * 9 8 5 30 30 H 1.09002 * 109.47509 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47337 * 300.06760 * 1 2 3 32 32 H 1.09000 * 109.47302 * 60.06434 * 1 2 3 33 33 H 1.08992 * 109.46414 * 58.66659 * 4 2 1 34 34 H 1.09003 * 109.46180 * 298.70465 * 4 2 1 35 35 H 1.08995 * 109.47163 * 179.83943 * 7 5 4 36 36 H 1.09000 * 109.47091 * 299.84063 * 7 5 4 37 37 H 1.09001 * 109.47105 * 59.83995 * 7 5 4 38 38 H 1.09004 * 109.58553 * 185.57728 * 8 5 4 39 39 H 1.08997 * 109.70107 * 65.22604 * 8 5 4 40 40 H 1.08995 * 109.47436 * 62.46506 * 12 10 9 41 41 H 1.09004 * 109.47458 * 302.46235 * 12 10 9 42 42 H 1.09001 * 109.48877 * 52.78854 * 14 13 12 43 43 H 1.09001 * 109.51441 * 292.72223 * 14 13 12 44 44 H 1.09005 * 109.62680 * 173.54134 * 15 14 13 45 45 H 1.08997 * 109.63354 * 294.11896 * 15 14 13 46 46 H 0.96996 * 119.99936 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.63077 * 291.47799 * 27 16 15 48 48 H 1.08996 * 109.79502 * 170.98916 * 27 16 15 49 49 H 1.08994 * 109.49368 * 307.21207 * 28 13 12 50 50 H 1.09000 * 109.49539 * 67.29491 * 28 13 12 51 51 H 1.09002 * 109.58421 * 65.92601 * 29 9 8 52 52 H 1.09000 * 109.58562 * 186.34853 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0407 -0.7228 -1.2486 5 6 3.5708 -0.6948 -1.2661 6 1 3.9339 -1.1889 -2.1674 7 6 4.0552 0.7564 -1.2490 8 6 4.1052 -1.4268 -0.0311 9 7 3.5045 -0.8295 1.1694 10 6 4.2810 -0.3872 2.1783 11 8 5.4877 -0.4799 2.1002 12 6 3.6497 0.2225 3.4033 13 7 4.7023 0.6756 4.3225 14 6 5.5143 1.7362 3.7113 15 6 6.4778 2.3048 4.7584 16 7 7.2440 1.1927 5.3410 17 6 8.5894 1.2389 5.4061 18 8 9.2121 0.2766 5.8149 19 6 9.3015 2.4464 4.9851 20 1 8.7478 3.3340 4.7167 21 6 10.7010 2.4508 4.9303 22 7 11.3746 1.4132 5.3511 23 14 11.6045 3.9400 4.2557 24 1 11.9990 4.8297 5.3773 25 1 12.8191 3.4939 3.5271 26 1 10.7138 4.6804 3.3263 27 6 6.5030 0.0293 5.8512 28 6 5.5384 -0.4498 4.7611 29 6 2.0409 -0.7293 1.2518 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 1.6582 -0.2240 -2.1390 34 1 1.6966 -1.7570 -1.2358 35 1 5.1450 0.7758 -1.2586 36 1 3.6748 1.2768 -2.1279 37 1 3.6910 1.2504 -0.3482 38 1 5.1895 -1.3248 0.0135 39 1 3.8395 -2.4825 -0.0861 40 1 3.0287 -0.5222 3.9009 41 1 3.0333 1.0722 3.1098 42 1 4.8618 2.5303 3.3482 43 1 6.0841 1.3243 2.8783 44 1 7.1599 3.0102 4.2836 45 1 5.9117 2.8093 5.5414 46 1 12.3438 1.4164 5.3135 47 1 5.9391 0.3149 6.7392 48 1 7.1994 -0.7711 6.1014 49 1 4.9035 -1.2411 5.1594 50 1 6.1079 -0.8317 3.9138 51 1 1.6083 -1.7287 1.2980 52 1 1.7628 -0.1669 2.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355382012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:28 Heat of formation + Delta-G solvation = -58.497190 kcal Electronic energy + Delta-G solvation = -31225.304745 eV Core-core repulsion = 27224.835998 eV Total energy + Delta-G solvation = -4000.468747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.80109 -39.04263 -37.72973 -36.02029 -33.94869 -33.70140 -33.12017 -32.37759 -30.49447 -28.84717 -27.22842 -27.05987 -26.34012 -25.55206 -23.97923 -22.91294 -21.89646 -20.77247 -20.09014 -18.91234 -18.62860 -17.31034 -16.67155 -16.01536 -15.67328 -15.60533 -15.31779 -14.91531 -14.60390 -14.42924 -14.36283 -14.26779 -14.08622 -13.84940 -13.64210 -13.57661 -13.14820 -12.66589 -12.46389 -12.36031 -12.25908 -12.04195 -11.90726 -11.86053 -11.49721 -11.35371 -11.31933 -11.17910 -11.06714 -10.87499 -10.80051 -10.75842 -10.64268 -10.44154 -10.32575 -10.18561 -10.10388 -9.89549 -8.77550 -8.72886 -7.93381 -7.47549 -7.03030 -6.11695 -4.55066 2.58246 2.85281 3.18322 3.25198 3.29122 4.07276 4.17739 4.21427 4.35431 4.38896 4.59036 4.64889 4.67618 4.73162 4.83345 4.97660 5.02903 5.08150 5.12425 5.28695 5.29834 5.33990 5.38218 5.41028 5.52194 5.54792 5.61293 5.65448 5.69830 5.73952 5.81254 5.82903 5.87207 5.91783 5.92609 6.09448 6.11743 6.13298 6.28779 6.38003 6.44185 6.62144 6.69552 6.90358 7.12013 7.33876 7.35263 7.52890 7.74375 8.18246 8.23364 8.48363 9.10345 9.56576 10.67042 10.86386 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.002885 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.639207 B = 9704.204054 C =10441.322455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.108 4.108 5 C -0.106 4.106 6 H 0.079 0.921 7 C -0.145 4.145 8 C 0.113 3.887 9 N -0.614 5.614 10 C 0.478 3.522 11 O -0.519 6.519 12 C 0.037 3.963 13 N -0.511 5.511 14 C 0.028 3.972 15 C 0.132 3.868 16 N -0.641 5.641 17 C 0.561 3.439 18 O -0.580 6.580 19 C -0.543 4.543 20 H 0.072 0.928 21 C 0.088 3.912 22 N -0.768 5.768 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.264 1.264 27 C 0.129 3.871 28 C 0.027 3.973 29 C 0.112 3.888 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.267 0.733 47 H 0.044 0.956 48 H 0.084 0.916 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.068 0.932 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.280 -2.475 -13.244 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.125 4.125 6 H 0.098 0.902 7 C -0.202 4.202 8 C -0.010 4.010 9 N -0.350 5.350 10 C 0.266 3.734 11 O -0.395 6.395 12 C -0.095 4.095 13 N -0.233 5.233 14 C -0.100 4.100 15 C 0.007 3.993 16 N -0.379 5.379 17 C 0.367 3.633 18 O -0.463 6.463 19 C -0.580 4.580 20 H 0.090 0.910 21 C -0.132 4.132 22 N -0.397 5.397 23 Si 0.730 3.270 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.188 1.188 27 C 0.004 3.996 28 C -0.101 4.101 29 C -0.011 4.011 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.257 -2.942 -12.552 26.591 hybrid contribution 0.494 0.374 -1.246 1.391 sum -22.763 -2.568 -13.797 26.742 Atomic orbital electron populations 1.21780 0.94411 1.02044 1.02141 1.21647 0.95766 1.00555 0.95004 0.90186 1.21605 0.94842 1.00581 0.97559 1.21487 0.95682 0.97302 0.98067 0.90237 1.21820 1.01382 0.95403 1.01613 1.21602 1.00018 0.95830 0.83580 1.48340 1.06577 1.61665 1.18386 1.22474 0.87816 0.78057 0.85092 1.90731 1.14127 1.55170 1.79421 1.22398 0.96577 1.00691 0.89849 1.62467 1.14444 1.11060 1.35370 1.22759 0.95710 0.93354 0.98222 1.21428 0.93089 0.90357 0.94447 1.48159 1.06588 1.17699 1.65479 1.18226 0.78362 0.88823 0.77868 1.90581 1.65273 1.38956 1.51456 1.20950 0.91086 0.97785 1.48173 0.91043 1.25727 0.97811 0.96353 0.93294 1.70033 1.07270 1.28146 1.34266 0.86403 0.79261 0.81929 0.79448 1.19840 1.20464 1.18838 1.21150 0.93176 0.91197 0.94078 1.22793 0.95472 0.91921 0.99930 1.21887 0.79824 1.00770 0.98620 0.92510 0.92296 0.92347 0.91695 0.91843 0.92515 0.92870 0.92385 0.88926 0.91931 0.88204 0.88278 0.91649 0.91773 0.88909 0.93624 0.92219 0.93778 0.89785 0.91829 0.91026 0.91387 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.20 37.16 0.34 -0.31 16 2 C -0.11 -0.66 2.54 -90.28 -0.23 -0.89 16 3 H 0.08 0.56 6.33 -51.93 -0.33 0.23 16 4 C -0.11 -0.67 4.71 -26.69 -0.13 -0.80 16 5 C -0.11 -0.84 3.21 -90.50 -0.29 -1.13 16 6 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 7 C -0.14 -1.33 8.70 37.16 0.32 -1.01 16 8 C 0.11 1.13 5.82 -3.71 -0.02 1.11 16 9 N -0.61 -6.26 2.41 -172.50 -0.41 -6.67 16 10 C 0.48 6.46 7.11 -10.99 -0.08 6.38 16 11 O -0.52 -9.61 11.06 5.56 0.06 -9.55 16 12 C 0.04 0.43 4.20 -4.98 -0.02 0.41 16 13 N -0.51 -8.09 4.83 -235.76 -1.14 -9.23 16 14 C 0.03 0.49 5.18 -3.70 -0.02 0.47 16 15 C 0.13 2.68 6.46 -3.60 -0.02 2.66 16 16 N -0.64 -15.82 3.01 -174.13 -0.52 -16.34 16 17 C 0.56 16.92 7.63 -12.99 -0.10 16.82 16 18 O -0.58 -19.70 14.50 5.19 0.08 -19.63 16 19 C -0.54 -15.90 8.76 -35.63 -0.31 -16.21 16 20 H 0.07 1.91 5.90 -52.49 -0.31 1.60 16 21 C 0.09 2.53 5.50 -17.36 -0.10 2.44 16 22 N -0.77 -23.85 11.85 55.55 0.66 -23.20 16 23 Si 0.90 20.77 29.56 -169.99 -5.03 15.74 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 26 H -0.26 -5.84 7.11 56.52 0.40 -5.43 16 27 C 0.13 2.78 6.60 -3.61 -0.02 2.76 16 28 C 0.03 0.49 5.15 -3.70 -0.02 0.48 16 29 C 0.11 0.76 5.66 -3.48 -0.02 0.74 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.58 5.97 -51.93 -0.31 0.27 16 38 H 0.09 1.20 7.01 -51.93 -0.36 0.83 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.96 8.02 -51.93 -0.42 0.54 16 41 H 0.10 0.93 7.54 -51.93 -0.39 0.54 16 42 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 43 H 0.06 1.32 5.90 -51.93 -0.31 1.01 16 44 H 0.09 1.96 5.53 -51.93 -0.29 1.68 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.27 7.51 8.29 -40.82 -0.34 7.17 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.08 2.01 7.05 -51.93 -0.37 1.64 16 49 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 50 H 0.07 1.54 5.56 -51.93 -0.29 1.25 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.09 0.49 5.92 -51.93 -0.31 0.18 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -37.46 387.86 -9.90 -47.36 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.72 Total: 1.77 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -0.71 Total: 13.90 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -1.42 Total: -55.44 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: 0.14 Total: -29.18 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.46 -9.90 -47.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355382012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.140 kcal (2) G-P(sol) polarization free energy of solvation -37.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds