Wall clock time and date at job start Tue Mar 31 2020 20:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.87485 * 2 1 4 4 C 1.54326 * 109.88251 * 121.17441 * 2 1 3 5 5 C 1.55159 * 102.94207 * 141.60968 * 4 2 1 6 6 H 1.08999 * 111.00438 * 82.60670 * 5 4 2 7 7 C 1.52999 * 111.00552 * 206.42674 * 5 4 2 8 8 N 1.46899 * 109.47064 * 185.00125 * 7 5 4 9 9 C 1.55134 * 101.48744 * 324.33332 * 5 4 2 10 10 N 1.47016 * 109.88244 * 238.98405 * 2 1 3 11 11 C 1.34780 * 125.65064 * 61.60265 * 10 2 1 12 12 O 1.21351 * 119.99403 * 0.02562 * 11 10 2 13 13 C 1.49449 * 120.00224 * 179.97438 * 11 10 2 14 14 O 1.21346 * 120.00061 * 6.89461 * 13 11 10 15 15 N 1.34771 * 119.99986 * 186.88897 * 13 11 10 16 16 C 1.46929 * 120.63435 * 177.49090 * 15 13 11 17 17 C 1.53186 * 108.77516 * 233.59211 * 16 15 13 18 18 C 1.53043 * 109.31453 * 305.35572 * 17 16 15 19 19 C 1.52992 * 109.46263 * 181.38825 * 18 17 16 20 20 C 1.50702 * 109.47348 * 174.97824 * 19 18 17 21 21 H 1.08009 * 119.99594 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00309 * 179.72796 * 20 19 18 23 23 N 1.31508 * 119.99832 * 0.26813 * 22 20 19 24 24 Si 1.86799 * 119.99994 * 180.27215 * 22 20 19 25 25 H 1.48508 * 109.47071 * 89.99604 * 24 22 20 26 26 H 1.48491 * 109.47198 * 209.99946 * 24 22 20 27 27 H 1.48507 * 109.47003 * 330.00012 * 24 22 20 28 28 C 1.53045 * 109.52104 * 61.37584 * 18 17 16 29 29 C 1.46926 * 120.63335 * 357.46979 * 15 13 11 30 30 H 1.09001 * 109.47157 * 179.56104 * 1 2 3 31 31 H 1.08996 * 109.46964 * 299.56103 * 1 2 3 32 32 H 1.08994 * 109.46941 * 59.56024 * 1 2 3 33 33 H 1.08998 * 110.72181 * 259.97510 * 4 2 1 34 34 H 1.09002 * 110.72208 * 23.07467 * 4 2 1 35 35 H 1.08999 * 109.46955 * 305.00004 * 7 5 4 36 36 H 1.08993 * 109.47352 * 64.99931 * 7 5 4 37 37 H 1.00897 * 111.00321 * 179.97438 * 8 7 5 38 38 H 1.00897 * 111.00344 * 303.95246 * 8 7 5 39 39 H 1.08999 * 110.49679 * 278.45771 * 9 5 4 40 40 H 1.08996 * 110.34276 * 156.05215 * 9 5 4 41 41 H 1.08996 * 109.58733 * 113.79720 * 16 15 13 42 42 H 1.09000 * 109.57947 * 353.37425 * 16 15 13 43 43 H 1.09007 * 109.49656 * 185.41140 * 17 16 15 44 44 H 1.08994 * 109.50498 * 65.31482 * 17 16 15 45 45 H 1.08993 * 109.46002 * 301.36839 * 18 17 16 46 46 H 1.08998 * 109.47177 * 54.97554 * 19 18 17 47 47 H 1.09004 * 109.47310 * 294.97651 * 19 18 17 48 48 H 0.97004 * 119.99938 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.49843 * 58.58027 * 28 18 17 50 50 H 1.09000 * 109.49493 * 178.68032 * 28 18 17 51 51 H 1.09002 * 109.59175 * 246.20294 * 29 15 13 52 52 H 1.09006 * 109.58777 * 6.62296 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7512 1.2417 5 6 3.2876 -1.5152 0.6903 6 1 4.1656 -0.8700 0.6597 7 6 3.5649 -2.7752 1.5128 8 7 4.8040 -3.4063 1.0391 9 6 2.8099 -1.8816 -0.7395 10 7 2.0300 -0.7124 -1.1849 11 6 1.8073 -0.3586 -2.4662 12 8 1.1431 0.6254 -2.7172 13 6 2.3794 -1.1776 -3.5778 14 8 2.9369 -2.2273 -3.3332 15 7 2.2760 -0.7504 -4.8518 16 6 2.8809 -1.5166 -5.9498 17 6 3.7874 -0.5849 -6.7603 18 6 2.9829 0.6353 -7.2142 19 6 3.8759 1.5513 -8.0533 20 6 3.0539 2.6886 -8.6026 21 1 1.9996 2.7515 -8.3762 22 6 3.6485 3.6517 -9.3900 23 7 4.9320 3.5749 -9.6660 24 14 2.6310 5.0656 -10.0646 25 1 2.6523 6.1949 -9.1005 26 1 3.2010 5.5110 -11.3614 27 1 1.2307 4.6148 -10.2681 28 6 2.4773 1.3994 -5.9883 29 6 1.5558 0.4903 -5.1692 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3633 0.5070 0.8939 32 1 -0.3633 0.5206 -0.8860 33 1 2.3529 -0.0488 2.0200 34 1 1.3040 -1.4460 1.6181 35 1 3.6727 -2.5066 2.5636 36 1 2.7354 -3.4730 1.3994 37 1 5.0094 -4.2411 1.5672 38 1 4.7533 -3.6062 0.0514 39 1 2.1801 -2.7708 -0.7153 40 1 3.6655 -2.0392 -1.3961 41 1 2.0963 -1.9142 -6.5936 42 1 3.4715 -2.3365 -5.5411 43 1 4.1670 -1.1157 -7.6335 44 1 4.6227 -0.2598 -6.1401 45 1 2.1335 0.3077 -7.8136 46 1 4.3067 0.9831 -8.8776 47 1 4.6761 1.9497 -7.4293 48 1 5.3503 4.2523 -10.2202 49 1 3.3251 1.7056 -5.3754 50 1 1.9243 2.2812 -6.3119 51 1 0.6630 0.2565 -5.7493 52 1 1.2719 0.9947 -4.2455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567876721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:19 Heat of formation + Delta-G solvation = -63.045344 kcal Electronic energy + Delta-G solvation = -30530.394428 eV Core-core repulsion = 26529.728459 eV Total energy + Delta-G solvation = -4000.665969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17538 -39.55543 -38.06129 -37.42129 -35.21612 -33.97672 -32.21476 -32.02267 -31.08042 -30.68067 -28.20817 -26.31850 -25.96824 -25.05569 -23.81738 -22.82397 -21.89535 -20.84499 -20.65429 -19.63033 -18.80689 -17.46527 -17.17127 -16.63771 -16.22390 -16.06582 -15.82267 -15.38238 -14.82784 -14.57240 -14.42739 -14.35608 -13.93945 -13.82798 -13.62818 -13.53425 -13.39714 -13.05573 -12.89262 -12.76945 -12.61135 -12.48797 -12.19471 -11.93051 -11.80250 -11.34174 -11.20262 -11.16429 -11.09644 -10.97594 -10.93826 -10.70827 -10.64136 -10.38065 -10.08552 -9.71470 -9.35382 -9.12625 -9.06724 -8.95834 -8.71834 -8.42004 -8.31799 -5.97519 -3.99120 1.41052 2.16905 3.18306 3.33293 3.34560 3.39774 3.42722 3.91934 4.02134 4.20351 4.33743 4.47783 4.54394 4.77486 4.86990 4.91902 5.05011 5.15315 5.26422 5.27268 5.32845 5.37779 5.38208 5.43609 5.44713 5.48921 5.63317 5.65844 5.70101 5.72817 5.82030 5.91094 5.95290 6.02637 6.05144 6.29310 6.35095 6.41851 6.55617 6.64320 6.70344 6.99040 7.00396 7.03046 7.05155 7.15897 7.40731 7.69001 7.69284 7.84148 8.00654 8.02365 8.45308 9.07295 9.64551 11.13827 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002480 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.431727 B =11288.997765 C =11970.335380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 H 0.083 0.917 4 C -0.122 4.122 5 C -0.106 4.106 6 H 0.096 0.904 7 C 0.075 3.925 8 N -0.853 5.853 9 C 0.104 3.896 10 N -0.587 5.587 11 C 0.525 3.475 12 O -0.504 6.504 13 C 0.505 3.495 14 O -0.535 6.535 15 N -0.565 5.565 16 C 0.108 3.892 17 C -0.128 4.128 18 C -0.084 4.084 19 C 0.028 3.972 20 C -0.515 4.515 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.896 5.896 24 Si 0.889 3.111 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 C -0.115 4.115 29 C 0.043 3.957 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.342 0.658 38 H 0.345 0.655 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.259 0.741 49 H 0.055 0.945 50 H 0.085 0.915 51 H 0.063 0.937 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -13.775 23.831 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.126 4.126 6 H 0.115 0.885 7 C -0.056 4.056 8 N -0.383 5.383 9 C -0.019 4.019 10 N -0.321 5.321 11 C 0.310 3.690 12 O -0.381 6.381 13 C 0.288 3.712 14 O -0.414 6.414 15 N -0.297 5.297 16 C -0.014 4.014 17 C -0.166 4.166 18 C -0.102 4.102 19 C -0.009 4.009 20 C -0.553 4.553 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.536 5.536 24 Si 0.717 3.283 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.153 4.153 29 C -0.078 4.078 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.103 0.897 51 H 0.081 0.919 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.759 -13.008 23.841 27.762 hybrid contribution -1.058 0.050 -0.909 1.396 sum -6.816 -12.957 22.932 27.207 Atomic orbital electron populations 1.22158 0.94245 1.02427 1.03379 1.21708 0.94994 0.96732 0.83662 0.89850 1.22777 0.97344 0.99537 0.96435 1.22569 0.98449 0.97424 0.94118 0.88541 1.21681 0.90673 0.94210 0.99063 1.58697 1.36361 1.33958 1.09286 1.22726 0.96390 0.87617 0.95132 1.48356 1.51202 1.28290 1.04213 1.20045 0.81158 0.84984 0.82793 1.90331 1.39786 1.27369 1.80606 1.19780 0.81407 0.86041 0.84017 1.90667 1.44044 1.23469 1.83171 1.48117 1.51551 1.25145 1.04855 1.21850 0.97178 0.94740 0.87605 1.22026 0.98189 0.97226 0.99184 1.21240 0.98615 0.94360 0.96026 1.19119 0.94368 0.93383 0.94033 1.21247 0.95434 1.08357 1.30266 0.92575 1.25022 0.94880 0.98117 0.96493 1.69965 1.10155 1.35092 1.38363 0.86642 0.80452 0.82799 0.78396 1.20709 1.21330 1.19902 1.21860 0.98927 0.98394 0.96095 1.23491 0.94462 0.84157 1.05643 0.92489 0.91338 0.90862 0.89550 0.90172 0.90528 0.95161 0.84512 0.84190 0.91223 0.88164 0.91219 0.89496 0.90891 0.92031 0.92364 0.96652 0.96669 0.93086 0.92614 0.89704 0.91866 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.10 37.16 0.34 -1.04 16 2 C 0.13 1.16 3.46 -66.95 -0.23 0.93 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -0.73 5.94 -24.89 -0.15 -0.88 16 5 C -0.11 -0.75 3.26 -88.35 -0.29 -1.03 16 6 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 7 C 0.07 0.43 6.29 -3.83 -0.02 0.41 16 8 N -0.85 -5.45 9.62 -10.37 -0.10 -5.55 16 9 C 0.10 0.98 4.92 -2.40 -0.01 0.97 16 10 N -0.59 -6.60 3.06 -163.38 -0.50 -7.10 16 11 C 0.53 7.43 7.63 -11.58 -0.09 7.35 16 12 O -0.50 -7.81 12.05 5.50 0.07 -7.74 16 13 C 0.51 7.74 7.71 -11.59 -0.09 7.65 16 14 O -0.53 -8.41 13.31 5.50 0.07 -8.34 16 15 N -0.57 -8.88 2.97 -173.28 -0.51 -9.40 16 16 C 0.11 1.62 6.43 -3.71 -0.02 1.60 16 17 C -0.13 -2.19 5.36 -26.61 -0.14 -2.33 16 18 C -0.08 -1.68 2.10 -90.58 -0.19 -1.87 16 19 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 20 C -0.51 -14.27 8.39 -34.44 -0.29 -14.56 16 21 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 23 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 24 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 28 C -0.11 -2.17 5.19 -26.61 -0.14 -2.30 16 29 C 0.04 0.69 6.24 -3.71 -0.02 0.67 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.79 6.88 -51.93 -0.36 0.43 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.40 7.75 -51.93 -0.40 0.00 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.03 0.16 7.96 -51.93 -0.41 -0.25 16 37 H 0.34 1.61 9.08 -39.29 -0.36 1.26 16 38 H 0.35 2.29 8.49 -39.29 -0.33 1.95 16 39 H 0.07 0.64 7.91 -51.93 -0.41 0.23 16 40 H 0.10 1.12 6.33 -51.93 -0.33 0.79 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.26 7.02 -51.93 -0.36 0.90 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 50 H 0.08 1.71 6.91 -51.93 -0.36 1.35 16 51 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.15 2.45 3.76 -57.04 -0.21 2.24 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -31.61 398.53 -9.79 -41.40 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.97 Total: 2.68 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.57 Total: -2.38 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.38 Total: -48.30 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.14 Total: -16.08 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.61 -9.79 -41.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567876721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.642 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds