Wall clock time and date at job start Tue Mar 31 2020 21:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.49709 * 2 1 4 4 C 1.53191 * 109.49900 * 239.93053 * 2 1 3 5 5 N 1.46926 * 108.77537 * 185.41229 * 4 2 1 6 6 C 1.34783 * 120.63348 * 233.58882 * 5 4 2 7 7 O 1.21345 * 119.99743 * 354.97880 * 6 5 4 8 8 C 1.49446 * 119.99883 * 174.97270 * 6 5 4 9 9 O 1.21351 * 120.00444 * 274.74792 * 8 6 5 10 10 N 1.34779 * 119.99763 * 94.75110 * 8 6 5 11 11 C 1.46931 * 120.63023 * 184.75835 * 10 8 6 12 12 C 1.53626 * 108.53863 * 126.37032 * 11 10 8 13 13 C 1.53038 * 109.24079 * 54.86121 * 12 11 10 14 14 C 1.53004 * 109.45262 * 178.49323 * 13 12 11 15 15 C 1.50693 * 109.46896 * 295.06615 * 14 13 12 16 16 H 1.07995 * 120.00391 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99744 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00124 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46819 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46746 * 119.99602 * 19 17 15 22 22 H 1.48492 * 109.46948 * 239.99861 * 19 17 15 23 23 C 1.53041 * 109.53999 * 298.50919 * 13 12 11 24 24 C 1.46927 * 120.63076 * 5.04732 * 10 8 6 25 25 C 1.46931 * 118.73784 * 53.61167 * 5 4 2 26 26 C 1.53185 * 108.77674 * 306.39105 * 25 5 4 27 27 C 1.53042 * 109.49610 * 120.09774 * 2 1 3 28 28 H 1.09000 * 109.46163 * 301.33511 * 27 2 1 29 29 N 1.46897 * 109.46394 * 61.29405 * 27 2 1 30 30 H 1.09006 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47622 * 300.06631 * 1 2 3 32 32 H 1.09007 * 109.47031 * 60.06942 * 1 2 3 33 33 H 1.09003 * 109.58658 * 65.63291 * 4 2 1 34 34 H 1.09000 * 109.71033 * 305.27209 * 4 2 1 35 35 H 1.08994 * 109.59001 * 246.20677 * 11 10 8 36 36 H 1.09004 * 109.58471 * 6.63456 * 11 10 8 37 37 H 1.08994 * 109.63588 * 294.86929 * 12 11 10 38 38 H 1.08996 * 109.43052 * 174.72725 * 12 11 10 39 39 H 1.09000 * 109.46338 * 58.52846 * 13 12 11 40 40 H 1.09007 * 109.46575 * 55.06343 * 14 13 12 41 41 H 1.08994 * 109.47525 * 175.05851 * 14 13 12 42 42 H 0.96996 * 120.00036 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.49370 * 301.41557 * 23 13 12 44 44 H 1.09000 * 109.49928 * 181.31903 * 23 13 12 45 45 H 1.08994 * 109.58659 * 353.37479 * 24 10 8 46 46 H 1.09009 * 109.58300 * 113.65353 * 24 10 8 47 47 H 1.09005 * 109.58499 * 66.18107 * 25 5 4 48 48 H 1.09001 * 109.58514 * 186.60140 * 25 5 4 49 49 H 1.08999 * 109.49950 * 174.58339 * 26 25 5 50 50 H 1.08999 * 109.50078 * 294.68227 * 26 25 5 51 51 H 1.00897 * 110.99910 * 180.02562 * 29 27 2 52 52 H 1.00899 * 111.00106 * 303.95556 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5046 -0.8288 -1.1697 6 6 4.2812 -0.3858 -2.1783 7 8 3.7724 0.0215 -3.2019 8 6 5.7688 -0.3962 -2.0359 9 8 6.3334 0.5334 -1.4977 10 7 6.4834 -1.4381 -2.5054 11 6 7.9337 -1.5127 -2.2815 12 6 8.2585 -2.8662 -1.6314 13 6 7.6990 -3.9920 -2.5040 14 6 8.0524 -5.3437 -1.8803 15 6 9.5478 -5.5293 -1.8978 16 1 10.1825 -4.7603 -2.3126 17 6 10.1055 -6.6809 -1.3841 18 7 9.3326 -7.6171 -0.8785 19 14 11.9592 -6.9113 -1.4064 20 1 12.5985 -5.7215 -2.0236 21 1 12.4545 -7.0732 -0.0158 22 1 12.2980 -8.1219 -2.1968 23 6 6.1775 -3.8571 -2.6002 24 6 5.8281 -2.5176 -3.2563 25 6 4.1053 -1.4267 0.0306 26 6 3.5708 -0.6954 1.2659 27 6 2.0407 -0.7235 1.2482 28 1 1.6581 -0.2251 2.1389 29 7 1.5770 -2.1172 1.2303 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8907 33 1 1.7639 -0.1574 -2.1389 34 1 1.6054 -1.7213 -1.3010 35 1 8.4555 -1.4273 -3.2346 36 1 8.2432 -0.7040 -1.6193 37 1 7.8064 -2.9147 -0.6409 38 1 9.3394 -2.9765 -1.5442 39 1 8.1329 -3.9280 -3.5018 40 1 7.6945 -5.3736 -0.8511 41 1 7.5804 -6.1424 -2.4524 42 1 9.7250 -8.4270 -0.5169 43 1 5.7450 -3.8963 -1.6004 44 1 5.7773 -4.6727 -3.2024 45 1 4.7481 -2.3722 -3.2376 46 1 6.1800 -2.5109 -4.2880 47 1 3.8376 -2.4819 0.0862 48 1 5.1896 -1.3246 -0.0140 49 1 3.9333 -1.1903 2.1669 50 1 3.9159 0.3385 1.2543 51 1 1.9010 -2.6166 2.0449 52 1 0.5719 -2.1629 1.1545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572039331.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:45 Heat of formation + Delta-G solvation = -83.471812 kcal Electronic energy + Delta-G solvation = -31193.364201 eV Core-core repulsion = 27191.812474 eV Total energy + Delta-G solvation = -4001.551727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.09960 -39.52825 -38.16328 -37.32633 -34.75127 -34.10806 -32.87211 -32.15666 -30.90213 -30.22223 -28.44340 -27.39832 -25.78186 -24.76049 -23.57116 -22.65804 -22.52670 -21.37476 -19.94890 -19.30551 -18.59647 -17.66078 -16.97562 -16.57420 -16.44871 -16.26354 -15.79352 -15.05017 -14.91716 -14.81701 -14.55017 -14.07809 -13.89336 -13.77768 -13.60870 -13.47869 -13.29573 -13.13864 -13.00546 -12.88078 -12.47079 -12.26785 -12.20732 -11.91796 -11.82688 -11.46818 -11.27992 -11.19355 -11.08254 -11.02406 -10.80330 -10.74831 -10.72927 -10.45720 -10.20248 -9.70367 -9.48731 -9.32859 -9.25870 -8.99774 -8.70097 -8.52288 -8.37892 -6.02796 -4.04516 2.11846 2.14147 2.63219 3.28821 3.30480 3.37193 3.40357 4.11051 4.11533 4.37090 4.37882 4.43484 4.58043 4.76420 4.97555 5.00970 5.08906 5.16026 5.22392 5.29479 5.32164 5.34880 5.37620 5.41772 5.51581 5.55481 5.57378 5.58444 5.65927 5.72816 5.75948 5.80349 5.91382 5.98864 6.02139 6.22216 6.24178 6.30326 6.45363 6.53549 6.76693 6.90678 6.94600 7.03984 7.06154 7.08253 7.27437 7.63586 7.73911 7.77081 7.88549 7.96733 8.39271 9.02118 9.59685 11.08409 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.002861 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.976751 B = 9785.215103 C =10605.662470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 H 0.077 0.923 4 C 0.126 3.874 5 N -0.589 5.589 6 C 0.519 3.481 7 O -0.523 6.523 8 C 0.515 3.485 9 O -0.525 6.525 10 N -0.587 5.587 11 C 0.106 3.894 12 C -0.116 4.116 13 C -0.082 4.082 14 C 0.029 3.971 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.128 4.128 24 C 0.106 3.894 25 C 0.116 3.884 26 C -0.130 4.130 27 C 0.096 3.904 28 H 0.039 0.961 29 N -0.843 5.843 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.344 0.656 52 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.685 12.775 3.883 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 H 0.096 0.904 4 C 0.004 3.996 5 N -0.323 5.323 6 C 0.301 3.699 7 O -0.398 6.398 8 C 0.297 3.703 9 O -0.401 6.401 10 N -0.321 5.321 11 C -0.015 4.015 12 C -0.154 4.154 13 C -0.101 4.101 14 C -0.008 4.008 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.166 4.166 24 C -0.017 4.017 25 C -0.006 4.006 26 C -0.168 4.168 27 C -0.016 4.016 28 H 0.057 0.943 29 N -0.376 5.376 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.157 0.843 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.205 13.259 3.020 21.931 hybrid contribution 0.539 -0.056 0.999 1.137 sum -16.666 13.203 4.019 21.638 Atomic orbital electron populations 1.21789 0.94265 1.02251 1.02245 1.21562 0.96081 0.99637 0.94939 0.90438 1.21616 0.78263 1.01818 0.97906 1.48039 1.06987 1.58990 1.18283 1.20352 0.87905 0.77854 0.83747 1.90772 1.74156 1.46879 1.28029 1.20150 0.87760 0.83178 0.79229 1.90775 1.70697 1.34652 1.43945 1.48248 1.09551 1.20818 1.53443 1.22037 0.77867 1.00114 1.01464 1.21985 1.02872 0.91785 0.98781 1.21221 0.91758 0.97866 0.99211 1.19114 0.96295 0.89662 0.95750 1.21272 0.92249 1.02756 1.39144 0.92521 1.25013 0.97787 0.96131 0.95494 1.69964 1.34708 1.08052 1.40728 0.86601 0.86048 0.78102 0.77643 1.19737 1.21107 1.21101 1.22033 0.98950 0.94691 1.00895 1.21923 0.96818 0.87206 0.95716 1.21711 0.97483 0.98377 0.83075 1.21958 0.94759 1.01713 0.98392 1.21289 0.94861 0.89157 0.96257 0.94319 1.58747 1.17139 1.13229 1.48454 0.91937 0.92468 0.92017 0.89463 0.89761 0.91177 0.89406 0.92194 0.89406 0.92152 0.96585 0.96559 0.93107 0.91832 0.90741 0.90826 0.90678 0.89088 0.90321 0.90303 0.90848 0.84336 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.90 37.16 0.33 -0.50 16 2 C -0.10 -0.79 2.69 -90.50 -0.24 -1.04 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.13 1.25 5.44 -3.71 -0.02 1.23 16 5 N -0.59 -7.10 2.97 -173.27 -0.52 -7.61 16 6 C 0.52 7.89 5.48 -11.58 -0.06 7.82 16 7 O -0.52 -9.11 16.51 5.50 0.09 -9.02 16 8 C 0.51 8.36 5.47 -11.59 -0.06 8.30 16 9 O -0.52 -9.74 16.53 5.50 0.09 -9.65 16 10 N -0.59 -8.88 2.97 -173.00 -0.51 -9.39 16 11 C 0.11 1.61 6.45 -3.48 -0.02 1.59 16 12 C -0.12 -1.98 5.21 -26.39 -0.14 -2.12 16 13 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 15 C -0.52 -13.65 8.39 -34.44 -0.29 -13.94 16 16 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.13 -1.95 5.36 -26.61 -0.14 -2.09 16 24 C 0.11 1.47 6.35 -3.71 -0.02 1.45 16 25 C 0.12 1.26 6.10 -3.71 -0.02 1.23 16 26 C -0.13 -1.12 5.77 -26.61 -0.15 -1.27 16 27 C 0.10 0.67 3.07 -67.67 -0.21 0.47 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 N -0.84 -5.17 7.78 -4.63 -0.04 -5.21 16 30 H 0.06 0.31 6.59 -51.93 -0.34 -0.03 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.97 7.04 -51.93 -0.37 0.60 16 34 H 0.08 0.80 7.74 -51.93 -0.40 0.39 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.35 7.03 -51.93 -0.37 0.98 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.61 6.91 -51.93 -0.36 1.25 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.07 0.99 6.29 -51.93 -0.33 0.66 16 46 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 47 H 0.09 0.97 7.74 -51.93 -0.40 0.56 16 48 H 0.08 0.99 6.31 -51.93 -0.33 0.66 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.34 1.84 9.04 -39.29 -0.36 1.48 16 52 H 0.34 1.68 7.08 -39.29 -0.28 1.40 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -31.79 398.73 -9.58 -41.37 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.95 Total: 1.29 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.47 Total: 1.47 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.33 Total: -47.47 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.18 Total: -18.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.79 -9.58 -41.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572039331.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.103 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds