Wall clock time and date at job start Tue Mar 31 2020 21:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53046 * 109.46029 * 2 1 4 4 C 1.53195 * 109.31296 * 181.38055 * 3 2 1 5 5 N 1.46927 * 108.77661 * 305.36484 * 4 3 2 6 6 C 1.34775 * 120.62816 * 233.58804 * 5 4 3 7 7 O 1.21342 * 120.00143 * 8.66359 * 6 5 4 8 8 C 1.49451 * 119.99977 * 188.66325 * 6 5 4 9 9 O 1.21355 * 119.99683 * 5.96704 * 8 6 5 10 10 N 1.34775 * 120.00171 * 185.96482 * 8 6 5 11 11 C 1.46495 * 119.99749 * 180.27753 * 10 8 6 12 12 H 1.09003 * 109.46283 * 324.72503 * 11 10 8 13 13 C 1.53043 * 109.46315 * 84.69827 * 11 10 8 14 14 C 1.53194 * 109.31252 * 58.65181 * 13 11 10 15 15 N 1.46930 * 108.77456 * 54.63698 * 14 13 11 16 16 C 1.36932 * 120.62872 * 126.36866 * 15 14 13 17 17 H 1.07994 * 120.00303 * 337.99218 * 16 15 14 18 18 C 1.38816 * 119.99733 * 157.98737 * 16 15 14 19 19 N 1.31615 * 119.99889 * 153.87711 * 18 16 15 20 20 Si 1.86804 * 120.00026 * 333.87361 * 18 16 15 21 21 H 1.48500 * 109.46880 * 94.70661 * 20 18 16 22 22 H 1.48494 * 109.47165 * 214.70574 * 20 18 16 23 23 H 1.48498 * 109.46910 * 334.70834 * 20 18 16 24 24 C 1.46927 * 118.73745 * 306.38986 * 15 14 13 25 25 C 1.53042 * 109.45836 * 204.75165 * 11 10 8 26 26 H 1.09001 * 109.49711 * 181.39477 * 25 11 10 27 27 C 1.53000 * 109.49811 * 61.29856 * 25 11 10 28 28 C 1.46925 * 118.73958 * 53.85389 * 5 4 3 29 29 C 1.53043 * 109.45593 * 120.06238 * 2 1 3 30 30 H 1.09003 * 109.46671 * 60.00651 * 1 2 3 31 31 H 1.08998 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47909 * 300.00677 * 1 2 3 33 33 H 1.08991 * 109.45238 * 240.03216 * 2 1 3 34 34 H 1.09001 * 109.49635 * 61.42557 * 3 2 1 35 35 H 1.09003 * 109.49593 * 301.33006 * 3 2 1 36 36 H 1.08991 * 109.58597 * 185.57101 * 4 3 2 37 37 H 1.09004 * 109.69794 * 65.21718 * 4 3 2 38 38 H 0.96999 * 119.99853 * 0.02562 * 10 8 6 39 39 H 1.08997 * 109.49681 * 178.60477 * 13 11 10 40 40 H 1.09002 * 109.49660 * 298.70106 * 13 11 10 41 41 H 1.08996 * 109.58474 * 174.42619 * 14 13 11 42 42 H 1.09000 * 109.58300 * 294.85283 * 14 13 11 43 43 H 0.97005 * 119.99876 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58339 * 173.39560 * 24 15 14 45 45 H 1.08996 * 109.59000 * 293.67849 * 24 15 14 46 46 H 1.08997 * 109.47144 * 59.99853 * 27 25 11 47 47 H 1.08999 * 109.46937 * 180.02562 * 27 25 11 48 48 H 1.09004 * 109.46469 * 299.99644 * 27 25 11 49 49 H 1.09004 * 109.58137 * 65.93341 * 28 5 4 50 50 H 1.08998 * 109.58956 * 186.35441 * 28 5 4 51 51 H 1.08997 * 109.49911 * 298.56786 * 29 2 1 52 52 H 1.08993 * 109.49715 * 58.63234 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4392 -0.0348 5 7 4.0678 0.6239 1.0821 6 6 4.9619 1.1276 1.9557 7 8 5.2462 2.3068 1.9209 8 6 5.6034 0.2339 2.9673 9 8 5.4029 -0.9625 2.9339 10 7 6.4045 0.7567 3.9167 11 6 7.0381 -0.1201 4.9046 12 1 6.3606 -0.9372 5.1525 13 6 8.3338 -0.6907 4.3234 14 6 9.2697 0.4615 3.9446 15 7 9.4628 1.3202 5.1210 16 6 10.7224 1.6214 5.5657 17 1 11.5534 0.9816 5.3081 18 6 10.9312 2.7493 6.3475 19 7 11.9472 2.7919 7.1831 20 14 9.7702 4.2066 6.2137 21 1 8.7220 4.1021 7.2604 22 1 10.5334 5.4664 6.4015 23 1 9.1321 4.2095 4.8727 24 6 8.2787 1.8492 5.8116 25 6 7.3542 0.6815 6.1694 26 1 7.8481 0.0357 6.8955 27 6 6.0551 1.2243 6.7681 28 6 3.5755 -0.7531 1.2250 29 6 2.0397 -0.7229 1.2489 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3635 0.5139 0.8899 33 1 1.8929 -0.5133 -0.8903 34 1 1.6977 1.9498 0.9024 35 1 1.6573 1.9640 -0.8777 36 1 3.9416 2.4595 0.0647 37 1 3.9164 1.0156 -0.9781 38 1 6.5645 1.7130 3.9436 39 1 8.8183 -1.3235 5.0669 40 1 8.1055 -1.2808 3.4359 41 1 10.2309 0.0607 3.6229 42 1 8.8250 1.0428 3.1369 43 1 12.0933 3.5802 7.7291 44 1 8.5861 2.3640 6.7217 45 1 7.7547 2.5456 5.1571 46 1 5.3962 0.3933 7.0201 47 1 6.2808 1.7955 7.6685 48 1 5.5628 1.8711 6.0418 49 1 3.9189 -1.3532 0.3823 50 1 3.9485 -1.1797 2.1561 51 1 1.6976 -0.1957 2.1395 52 1 1.6566 -1.7432 1.2605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943377921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:00 Heat of formation + Delta-G solvation = -40.102329 kcal Electronic energy + Delta-G solvation = -31299.970941 eV Core-core repulsion = 27300.299855 eV Total energy + Delta-G solvation = -3999.671086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.10052 -39.53703 -38.03298 -37.79016 -34.75132 -34.00043 -32.46976 -31.94659 -31.41167 -30.32537 -28.78212 -26.43763 -25.71354 -24.82536 -23.64551 -23.00759 -22.24427 -21.05247 -20.82231 -19.76337 -19.00465 -17.84617 -17.06480 -16.78367 -16.18377 -15.72321 -15.23059 -15.09499 -15.03743 -14.69928 -14.44056 -14.32041 -14.14965 -13.76425 -13.71509 -13.55441 -13.39574 -13.21344 -12.93600 -12.75856 -12.24978 -12.22767 -12.14121 -12.01387 -11.64612 -11.58460 -11.53109 -11.40750 -11.19392 -11.18656 -10.76982 -10.75020 -10.67471 -10.55044 -10.29403 -10.08111 -9.76342 -9.43614 -9.25554 -8.95823 -8.89075 -8.60722 -7.07646 -5.97731 -3.26503 1.40376 2.28814 3.17045 3.30293 3.46673 3.49582 3.52446 4.29659 4.41705 4.43226 4.49860 4.51551 4.78276 4.86201 4.94792 4.98306 5.08312 5.18750 5.23039 5.25944 5.28830 5.30011 5.42139 5.45009 5.52182 5.57939 5.60711 5.67220 5.70815 5.77009 5.81723 5.81966 5.85544 5.96185 5.99834 6.06573 6.11338 6.17229 6.26887 6.29699 6.34821 6.57590 6.58860 6.63706 6.65047 6.88160 6.93680 7.30904 7.72544 7.88592 8.02373 8.28759 8.90563 9.70327 10.05638 11.17633 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.002918 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.950393 B = 9592.638244 C = 9931.963478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.128 4.128 4 C 0.106 3.894 5 N -0.584 5.584 6 C 0.507 3.493 7 O -0.519 6.519 8 C 0.508 3.492 9 O -0.521 6.521 10 N -0.678 5.678 11 C 0.156 3.844 12 H 0.085 0.915 13 C -0.147 4.147 14 C 0.149 3.851 15 N -0.604 5.604 16 C -0.260 4.260 17 H 0.088 0.912 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.871 3.129 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.130 3.870 25 C -0.118 4.118 26 H 0.093 0.907 27 C -0.147 4.147 28 C 0.067 3.933 29 C -0.130 4.130 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.079 0.921 45 H 0.021 0.979 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.050 0.950 49 H 0.067 0.933 50 H 0.145 0.855 51 H 0.065 0.935 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.358 -7.293 -12.264 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.166 4.166 4 C -0.016 4.016 5 N -0.318 5.318 6 C 0.289 3.711 7 O -0.395 6.395 8 C 0.289 3.711 9 O -0.400 6.400 10 N -0.330 5.330 11 C 0.052 3.948 12 H 0.103 0.897 13 C -0.186 4.186 14 C 0.023 3.977 15 N -0.327 5.327 16 C -0.387 4.387 17 H 0.106 0.894 18 C -0.176 4.176 19 N -0.544 5.544 20 Si 0.701 3.299 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.004 3.996 25 C -0.139 4.139 26 H 0.111 0.889 27 C -0.205 4.205 28 C -0.054 4.054 29 C -0.168 4.168 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.162 0.838 51 H 0.084 0.916 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.174 -7.392 -12.178 26.356 hybrid contribution -0.580 1.423 -0.168 1.546 sum -22.754 -5.969 -12.346 26.567 Atomic orbital electron populations 1.21823 0.95019 1.01763 1.01776 1.21174 0.95731 0.95871 0.98653 1.21969 0.94748 0.96987 1.02871 1.21725 0.94136 0.97245 0.88479 1.47930 1.41404 1.15297 1.27205 1.20255 0.80458 0.87807 0.82536 1.90773 1.61763 1.15883 1.71072 1.20008 0.80511 0.88087 0.82467 1.90439 1.61136 1.15350 1.73081 1.46087 1.45208 1.12966 1.28742 1.21126 0.94118 0.92181 0.87342 0.89670 1.22398 0.95723 0.99380 1.01148 1.20892 0.97440 0.90563 0.88847 1.44386 1.02131 1.57115 1.29026 1.18914 0.84937 1.06415 1.28479 0.89438 1.25141 0.96529 0.98040 0.97886 1.69907 1.31887 1.29342 1.23243 0.87142 0.80250 0.84044 0.78480 1.21643 1.23076 1.19531 1.21352 0.87792 0.93419 0.97015 1.21970 0.96569 0.99645 0.95713 0.88861 1.21810 0.96908 1.00844 1.00889 1.23018 0.93629 0.81323 1.07439 1.22092 0.95545 1.01060 0.98075 0.92701 0.92590 0.92708 0.90994 0.91378 0.90611 0.88758 0.91075 0.74889 0.90439 0.91945 0.91734 0.96049 0.92792 0.90303 0.96085 0.92818 0.92261 0.93082 0.91489 0.83840 0.91646 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.10 -0.65 2.68 -90.58 -0.24 -0.89 16 3 C -0.13 -0.95 5.36 -26.61 -0.14 -1.10 16 4 C 0.11 1.00 6.44 -3.71 -0.02 0.98 16 5 N -0.58 -6.69 2.97 -173.01 -0.51 -7.21 16 6 C 0.51 7.24 7.73 -11.59 -0.09 7.15 16 7 O -0.52 -8.70 15.93 5.50 0.09 -8.61 16 8 C 0.51 7.42 7.71 -11.59 -0.09 7.33 16 9 O -0.52 -7.73 12.82 5.49 0.07 -7.66 16 10 N -0.68 -10.31 3.59 -54.19 -0.19 -10.51 16 11 C 0.16 2.39 2.21 -67.89 -0.15 2.24 16 12 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 13 C -0.15 -2.39 5.77 -26.61 -0.15 -2.54 16 14 C 0.15 2.90 6.26 -3.71 -0.02 2.87 16 15 N -0.60 -13.91 2.83 -172.34 -0.49 -14.39 16 16 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 17 H 0.09 2.55 8.02 -52.49 -0.42 2.13 16 18 C 0.02 0.66 5.17 -17.43 -0.09 0.57 16 19 N -0.90 -27.30 13.97 55.49 0.78 -26.53 16 20 Si 0.87 22.07 24.41 -169.99 -4.15 17.92 16 21 H -0.29 -6.99 6.61 56.52 0.37 -6.61 16 22 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 23 H -0.27 -6.81 6.77 56.52 0.38 -6.42 16 24 C 0.13 2.72 3.23 -3.72 -0.01 2.70 16 25 C -0.12 -1.96 2.67 -90.51 -0.24 -2.20 16 26 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 27 C -0.15 -2.06 9.05 37.16 0.34 -1.73 16 28 C 0.07 0.66 6.02 -3.49 -0.02 0.64 16 29 C -0.13 -1.01 5.38 -26.38 -0.14 -1.15 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.01 7.01 -51.93 -0.36 0.65 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.41 6.72 6.22 -40.82 -0.25 6.47 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.27 7.91 -51.93 -0.41 0.86 16 42 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.08 1.83 4.20 -51.93 -0.22 1.62 16 45 H 0.02 0.44 5.81 -51.93 -0.30 0.14 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.05 0.70 7.54 -51.93 -0.39 0.31 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.14 1.66 4.28 -55.01 -0.24 1.42 16 51 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -30.84 388.65 -8.36 -39.21 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.91 Total: 4.83 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.90 Total: 7.09 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.42 Total: -58.63 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.16 Total: -16.27 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.15 Total: 17.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.84 -8.36 -39.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943377921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.893 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds