Wall clock time and date at job start Tue Mar 31 2020 21:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53046 * 109.46029 * 2 1 4 4 C 1.53195 * 109.31296 * 181.38055 * 3 2 1 5 5 N 1.46927 * 108.77661 * 305.36484 * 4 3 2 6 6 C 1.34775 * 120.62816 * 233.58804 * 5 4 3 7 7 O 1.21342 * 120.00143 * 8.66359 * 6 5 4 8 8 C 1.49451 * 119.99977 * 188.66325 * 6 5 4 9 9 O 1.21355 * 119.99683 * 5.96704 * 8 6 5 10 10 N 1.34775 * 120.00171 * 185.96482 * 8 6 5 11 11 C 1.46495 * 119.99749 * 180.27753 * 10 8 6 12 12 H 1.09003 * 109.46283 * 324.72503 * 11 10 8 13 13 C 1.53043 * 109.46315 * 84.69827 * 11 10 8 14 14 C 1.53194 * 109.31252 * 58.65181 * 13 11 10 15 15 N 1.46930 * 108.77456 * 54.63698 * 14 13 11 16 16 C 1.36932 * 120.62872 * 126.36866 * 15 14 13 17 17 H 1.07994 * 120.00303 * 337.99218 * 16 15 14 18 18 C 1.38816 * 119.99733 * 157.98737 * 16 15 14 19 19 N 1.31615 * 119.99889 * 153.87711 * 18 16 15 20 20 Si 1.86804 * 120.00026 * 333.87361 * 18 16 15 21 21 H 1.48500 * 109.46880 * 94.70661 * 20 18 16 22 22 H 1.48494 * 109.47165 * 214.70574 * 20 18 16 23 23 H 1.48498 * 109.46910 * 334.70834 * 20 18 16 24 24 C 1.46927 * 118.73745 * 306.38986 * 15 14 13 25 25 C 1.53042 * 109.45836 * 204.75165 * 11 10 8 26 26 H 1.09001 * 109.49711 * 181.39477 * 25 11 10 27 27 C 1.53000 * 109.49811 * 61.29856 * 25 11 10 28 28 C 1.46925 * 118.73958 * 53.85389 * 5 4 3 29 29 C 1.53043 * 109.45593 * 120.06238 * 2 1 3 30 30 H 1.09003 * 109.46671 * 60.00651 * 1 2 3 31 31 H 1.08998 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47909 * 300.00677 * 1 2 3 33 33 H 1.08991 * 109.45238 * 240.03216 * 2 1 3 34 34 H 1.09001 * 109.49635 * 61.42557 * 3 2 1 35 35 H 1.09003 * 109.49593 * 301.33006 * 3 2 1 36 36 H 1.08991 * 109.58597 * 185.57101 * 4 3 2 37 37 H 1.09004 * 109.69794 * 65.21718 * 4 3 2 38 38 H 0.96999 * 119.99853 * 0.02562 * 10 8 6 39 39 H 1.08997 * 109.49681 * 178.60477 * 13 11 10 40 40 H 1.09002 * 109.49660 * 298.70106 * 13 11 10 41 41 H 1.08996 * 109.58474 * 174.42619 * 14 13 11 42 42 H 1.09000 * 109.58300 * 294.85283 * 14 13 11 43 43 H 0.97005 * 119.99876 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58339 * 173.39560 * 24 15 14 45 45 H 1.08996 * 109.59000 * 293.67849 * 24 15 14 46 46 H 1.08997 * 109.47144 * 59.99853 * 27 25 11 47 47 H 1.08999 * 109.46937 * 180.02562 * 27 25 11 48 48 H 1.09004 * 109.46469 * 299.99644 * 27 25 11 49 49 H 1.09004 * 109.58137 * 65.93341 * 28 5 4 50 50 H 1.08998 * 109.58956 * 186.35441 * 28 5 4 51 51 H 1.08997 * 109.49911 * 298.56786 * 29 2 1 52 52 H 1.08993 * 109.49715 * 58.63234 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4392 -0.0348 5 7 4.0678 0.6239 1.0821 6 6 4.9619 1.1276 1.9557 7 8 5.2462 2.3068 1.9209 8 6 5.6034 0.2339 2.9673 9 8 5.4029 -0.9625 2.9339 10 7 6.4045 0.7567 3.9167 11 6 7.0381 -0.1201 4.9046 12 1 6.3606 -0.9372 5.1525 13 6 8.3338 -0.6907 4.3234 14 6 9.2697 0.4615 3.9446 15 7 9.4628 1.3202 5.1210 16 6 10.7224 1.6214 5.5657 17 1 11.5534 0.9816 5.3081 18 6 10.9312 2.7493 6.3475 19 7 11.9472 2.7919 7.1831 20 14 9.7702 4.2066 6.2137 21 1 8.7220 4.1021 7.2604 22 1 10.5334 5.4664 6.4015 23 1 9.1321 4.2095 4.8727 24 6 8.2787 1.8492 5.8116 25 6 7.3542 0.6815 6.1694 26 1 7.8481 0.0357 6.8955 27 6 6.0551 1.2243 6.7681 28 6 3.5755 -0.7531 1.2250 29 6 2.0397 -0.7229 1.2489 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3635 0.5139 0.8899 33 1 1.8929 -0.5133 -0.8903 34 1 1.6977 1.9498 0.9024 35 1 1.6573 1.9640 -0.8777 36 1 3.9416 2.4595 0.0647 37 1 3.9164 1.0156 -0.9781 38 1 6.5645 1.7130 3.9436 39 1 8.8183 -1.3235 5.0669 40 1 8.1055 -1.2808 3.4359 41 1 10.2309 0.0607 3.6229 42 1 8.8250 1.0428 3.1369 43 1 12.0933 3.5802 7.7291 44 1 8.5861 2.3640 6.7217 45 1 7.7547 2.5456 5.1571 46 1 5.3962 0.3933 7.0201 47 1 6.2808 1.7955 7.6685 48 1 5.5628 1.8711 6.0418 49 1 3.9189 -1.3532 0.3823 50 1 3.9485 -1.1797 2.1561 51 1 1.6976 -0.1957 2.1395 52 1 1.6566 -1.7432 1.2605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943377921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:58 Heat of formation + Delta-G solvation = -59.620475 kcal Electronic energy + Delta-G solvation = -31300.817311 eV Core-core repulsion = 27300.299855 eV Total energy + Delta-G solvation = -4000.517456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.18589 -40.69647 -39.20710 -38.81565 -36.22163 -34.96609 -33.88833 -33.68601 -32.12996 -31.95243 -29.49135 -27.73947 -27.37240 -26.03594 -24.37646 -24.31872 -23.37433 -22.56217 -21.73716 -20.62010 -20.42048 -18.98818 -18.70320 -18.05363 -17.40600 -17.09913 -16.61469 -16.34514 -15.94562 -15.77418 -15.66038 -15.31155 -15.15340 -15.13086 -14.96398 -14.75645 -14.43932 -14.39047 -14.25670 -13.95573 -13.68559 -13.59042 -13.12553 -13.03509 -12.81516 -12.71075 -12.66125 -12.53769 -12.36372 -12.20777 -12.09847 -12.00760 -11.86233 -11.67849 -11.59455 -11.46022 -11.34292 -11.26607 -10.63683 -10.37945 -10.06413 -9.82306 -9.02461 -8.17694 -5.41892 0.29006 1.26131 1.27069 1.41330 1.48562 2.06337 2.39699 2.43802 2.99261 3.22421 3.32662 3.64664 3.80041 3.84137 3.87356 3.89940 3.98863 4.10274 4.23151 4.31303 4.34923 4.40784 4.50593 4.52498 4.58296 4.62607 4.74734 4.75685 4.80138 4.82013 4.86902 4.89664 4.93486 4.95396 5.00544 5.05528 5.07276 5.12458 5.16283 5.19607 5.27336 5.30013 5.36327 5.40886 5.50950 5.55103 5.82671 5.94028 6.10352 6.19855 6.63655 6.88352 6.88679 7.61662 8.00110 9.01449 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.002918 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.950393 B = 9592.638244 C = 9931.963478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.122 4.122 4 C 0.101 3.899 5 N -0.576 5.576 6 C 0.501 3.499 7 O -0.553 6.553 8 C 0.512 3.488 9 O -0.522 6.522 10 N -0.681 5.681 11 C 0.164 3.836 12 H 0.105 0.895 13 C -0.136 4.136 14 C 0.147 3.853 15 N -0.616 5.616 16 C -0.246 4.246 17 H 0.057 0.943 18 C -0.032 4.032 19 N -0.949 5.949 20 Si 0.932 3.068 21 H -0.271 1.271 22 H -0.313 1.313 23 H -0.268 1.268 24 C 0.126 3.874 25 C -0.109 4.109 26 H 0.089 0.911 27 C -0.141 4.141 28 C 0.065 3.935 29 C -0.125 4.125 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.408 0.592 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.055 0.945 45 H 0.026 0.974 46 H 0.078 0.922 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.079 0.921 50 H 0.130 0.870 51 H 0.055 0.945 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.798 -8.426 -13.652 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.160 4.160 4 C -0.021 4.021 5 N -0.309 5.309 6 C 0.284 3.716 7 O -0.431 6.431 8 C 0.294 3.706 9 O -0.400 6.400 10 N -0.333 5.333 11 C 0.060 3.940 12 H 0.123 0.877 13 C -0.175 4.175 14 C 0.022 3.978 15 N -0.340 5.340 16 C -0.376 4.376 17 H 0.075 0.925 18 C -0.227 4.227 19 N -0.595 5.595 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.242 1.242 23 H -0.193 1.193 24 C 0.001 3.999 25 C -0.129 4.129 26 H 0.107 0.893 27 C -0.199 4.199 28 C -0.055 4.055 29 C -0.163 4.163 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.245 0.755 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.147 0.853 51 H 0.074 0.926 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -25.694 -8.578 -13.606 30.313 hybrid contribution 0.482 1.654 0.151 1.730 sum -25.211 -6.924 -13.455 29.404 Atomic orbital electron populations 1.21791 0.94077 1.02300 1.01924 1.21170 0.96449 0.95081 0.98432 1.21946 0.93067 0.97801 1.03166 1.21925 0.95548 0.96262 0.88322 1.48116 1.40007 1.16096 1.26656 1.20239 0.81015 0.87370 0.82968 1.90759 1.63224 1.16999 1.72152 1.20067 0.80217 0.88084 0.82282 1.90463 1.61109 1.15335 1.73138 1.46064 1.45537 1.12591 1.29101 1.21043 0.93878 0.92384 0.86681 0.87699 1.22269 0.95460 0.97996 1.01806 1.20996 0.97998 0.91092 0.87730 1.44494 1.01332 1.57656 1.30495 1.18876 0.86206 1.05415 1.27055 0.92481 1.25681 0.98439 1.00336 0.98234 1.70014 1.34487 1.29958 1.25002 0.86146 0.78686 0.80203 0.78865 1.19719 1.24202 1.19284 1.21396 0.87646 0.95142 0.95700 1.21823 0.96818 0.97866 0.96431 0.89303 1.21774 0.95733 1.01745 1.00649 1.23069 0.95087 0.80306 1.07074 1.22065 0.93815 1.02126 0.98256 0.91918 0.91878 0.93246 0.90014 0.92636 0.88719 0.90368 0.89281 0.75483 0.90420 0.90544 0.92620 0.95840 0.92990 0.92726 0.95632 0.90331 0.92424 0.92767 0.90292 0.85323 0.92623 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 71.98 0.66 -0.58 16 2 C -0.09 -0.98 2.68 -10.76 -0.03 -1.01 16 3 C -0.12 -1.54 5.36 30.67 0.16 -1.37 16 4 C 0.10 1.72 6.44 86.36 0.56 2.27 16 5 N -0.58 -12.21 2.97 -819.65 -2.43 -14.64 16 6 C 0.50 13.77 7.73 87.27 0.67 14.44 16 7 O -0.55 -18.29 15.93 -3.22 -0.05 -18.34 16 8 C 0.51 14.03 7.71 87.27 0.67 14.71 16 9 O -0.52 -14.24 12.82 -3.26 -0.04 -14.28 16 10 N -0.68 -19.49 3.59 -443.73 -1.59 -21.09 16 11 C 0.16 4.64 2.21 45.02 0.10 4.74 16 12 H 0.11 2.66 7.58 -2.39 -0.02 2.65 16 13 C -0.14 -4.19 5.77 30.67 0.18 -4.02 16 14 C 0.15 5.66 6.26 86.36 0.54 6.21 16 15 N -0.62 -28.43 2.83 -699.15 -1.98 -30.41 16 16 C -0.25 -13.84 10.04 84.04 0.84 -13.00 16 17 H 0.06 3.49 8.02 -2.91 -0.02 3.46 16 18 C -0.03 -1.86 5.17 84.86 0.44 -1.42 16 19 N -0.95 -59.34 13.97 21.65 0.30 -59.04 16 20 Si 0.93 46.56 24.41 68.60 1.67 48.23 16 21 H -0.27 -12.59 6.61 99.48 0.66 -11.93 16 22 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 23 H -0.27 -13.12 6.77 99.48 0.67 -12.44 16 24 C 0.13 5.16 3.23 86.35 0.28 5.44 16 25 C -0.11 -3.40 2.67 -10.72 -0.03 -3.43 16 26 H 0.09 2.88 8.14 -2.39 -0.02 2.87 16 27 C -0.14 -3.60 9.05 71.98 0.65 -2.95 16 28 C 0.07 1.12 6.02 86.51 0.52 1.64 16 29 C -0.12 -1.60 5.38 30.82 0.17 -1.43 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 1.62 7.01 -2.39 -0.02 1.60 16 37 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.41 12.74 6.22 -92.71 -0.58 12.17 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 2.21 7.91 -2.39 -0.02 2.19 16 42 H 0.02 0.91 7.74 -2.39 -0.02 0.89 16 43 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 44 H 0.05 2.51 4.20 -2.39 -0.01 2.50 16 45 H 0.03 1.04 5.81 -2.39 -0.01 1.03 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.05 1.36 7.54 -2.39 -0.02 1.34 16 49 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.13 2.69 4.28 -51.17 -0.22 2.47 16 51 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -67.90 388.65 2.32 -65.58 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.04 Total: 23.74 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.39 Total: 20.24 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -5.70 Total: -125.18 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.09 Total: -32.62 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.23 kcal Total: -67.90 2.32 -65.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943377921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.963 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds