Wall clock time and date at job start Tue Mar 31 2020 20:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.87478 * 2 1 4 4 C 1.55146 * 110.99092 * 236.16086 * 2 1 3 5 5 C 1.54318 * 103.01706 * 206.25224 * 4 2 1 6 6 N 1.47447 * 107.23247 * 22.28341 * 5 4 2 7 7 C 1.46904 * 111.00053 * 123.25940 * 6 5 4 8 8 C 1.50698 * 109.47191 * 69.86820 * 7 6 5 9 9 O 1.21279 * 120.00185 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00088 * 179.97438 * 8 7 6 11 11 C 1.47092 * 125.62672 * 0.02562 * 10 8 7 12 12 C 1.54461 * 107.29290 * 179.00729 * 11 10 8 13 13 C 1.54380 * 102.87437 * 338.50447 * 12 11 10 14 14 C 1.47571 * 125.63304 * 180.02562 * 10 8 7 15 15 C 1.52358 * 110.37245 * 152.40506 * 13 12 11 16 16 N 1.47342 * 108.40917 * 73.40910 * 15 13 12 17 17 C 1.36938 * 121.08263 * 229.15627 * 16 15 13 18 18 H 1.07994 * 119.99747 * 153.76509 * 17 16 15 19 19 C 1.38815 * 119.99965 * 333.76092 * 17 16 15 20 20 N 1.31614 * 120.00051 * 344.15974 * 19 17 16 21 21 Si 1.86794 * 119.99668 * 164.16143 * 19 17 16 22 22 H 1.48504 * 109.47310 * 90.00462 * 21 19 17 23 23 H 1.48504 * 109.46921 * 209.99860 * 21 19 17 24 24 H 1.48498 * 109.47428 * 330.00061 * 21 19 17 25 25 C 1.47170 * 117.83157 * 49.18130 * 16 15 13 26 26 C 1.53276 * 108.57081 * 308.75609 * 25 16 15 27 27 O 1.41883 * 110.71807 * 276.30383 * 13 12 11 28 28 C 1.47838 * 108.56865 * 0.98588 * 6 5 4 29 29 H 1.09004 * 109.47287 * 182.38750 * 1 2 3 30 30 H 1.08999 * 109.47559 * 302.38598 * 1 2 3 31 31 H 1.09004 * 109.47265 * 62.39181 * 1 2 3 32 32 H 1.08993 * 110.70723 * 87.87082 * 4 2 1 33 33 H 1.09001 * 110.70048 * 324.63247 * 4 2 1 34 34 H 1.08996 * 109.89059 * 262.87727 * 5 4 2 35 35 H 1.09004 * 109.88742 * 141.68651 * 5 4 2 36 36 H 1.08998 * 109.46805 * 309.87084 * 7 6 5 37 37 H 1.08996 * 109.47137 * 189.87553 * 7 6 5 38 38 H 1.08995 * 109.87759 * 59.58356 * 11 10 8 39 39 H 1.08993 * 110.00054 * 298.50366 * 11 10 8 40 40 H 1.09003 * 110.73095 * 220.15825 * 12 11 10 41 41 H 1.08994 * 110.89010 * 96.92340 * 12 11 10 42 42 H 1.08998 * 110.37185 * 84.48705 * 14 10 8 43 43 H 1.09005 * 110.37430 * 322.14357 * 14 10 8 44 44 H 1.08997 * 109.67655 * 193.13465 * 15 13 12 45 45 H 1.08996 * 109.67977 * 313.64725 * 15 13 12 46 46 H 0.96999 * 119.99741 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.62261 * 68.48450 * 25 16 15 48 48 H 1.09000 * 109.61583 * 188.85368 * 25 16 15 49 49 H 1.09004 * 109.51249 * 172.92684 * 26 25 16 50 50 H 1.08999 * 109.51592 * 293.02727 * 26 25 16 51 51 H 1.09006 * 110.37001 * 94.73357 * 28 6 5 52 52 H 1.08997 * 110.37529 * 217.07360 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8066 -1.2031 5 6 3.4692 -1.2707 -0.7011 6 7 3.4313 -1.2423 0.7726 7 6 3.7612 -2.5594 1.3333 8 6 5.2207 -2.8534 1.0999 9 8 5.9176 -2.0451 0.5237 10 7 5.7519 -4.0140 1.5324 11 6 5.0245 -5.0774 2.2422 12 6 6.0292 -6.2187 2.5137 13 6 7.1293 -5.9663 1.4604 14 6 7.1593 -4.4280 1.3721 15 6 8.4683 -6.5001 1.9536 16 7 8.4381 -7.9714 1.8806 17 6 8.8208 -8.7402 2.9472 18 1 8.4214 -9.7366 3.0655 19 6 9.7222 -8.2389 3.8762 20 7 10.4429 -7.1762 3.5868 21 14 9.9125 -9.0725 5.5369 22 1 10.9649 -10.1165 5.4491 23 1 10.2998 -8.0638 6.5556 24 1 8.6241 -9.6999 5.9264 25 6 7.9838 -8.5878 0.6237 26 6 6.6399 -7.9635 0.2317 27 8 6.7702 -6.5383 0.2126 28 6 2.0850 -0.8064 1.2005 29 1 -0.3634 -1.0268 0.0428 30 1 -0.3634 0.5504 0.8678 31 1 -0.3634 0.4763 -0.9107 32 1 2.1884 -0.1683 -2.0806 33 1 1.4475 -1.6630 -1.4207 34 1 4.2421 -0.5939 -1.0653 35 1 3.6682 -2.2850 -1.0474 36 1 3.1545 -3.3234 0.8473 37 1 3.5571 -2.5600 2.4039 38 1 4.2060 -5.4437 1.6227 39 1 4.6332 -4.6958 3.1853 40 1 5.5608 -7.1904 2.3572 41 1 6.4366 -6.1462 3.5220 42 1 7.7704 -4.0136 2.1739 43 1 7.5398 -4.1110 0.4011 44 1 9.2707 -6.1178 1.3227 45 1 8.6312 -6.1867 2.9847 46 1 11.0725 -6.8257 4.2361 47 1 8.7167 -8.4016 -0.1612 48 1 7.8640 -9.6619 0.7653 49 1 6.3497 -8.3158 -0.7581 50 1 5.8794 -8.2506 0.9578 51 1 1.4524 -1.6710 1.4018 52 1 2.1545 -0.1720 2.0841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972551513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:35 Heat of formation + Delta-G solvation = -36.246116 kcal Electronic energy + Delta-G solvation = -30866.787944 eV Core-core repulsion = 26867.284077 eV Total energy + Delta-G solvation = -3999.503868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.34395 -39.45137 -38.21242 -36.03364 -34.47875 -33.54473 -31.61076 -31.27628 -29.98567 -29.53265 -28.19655 -27.23546 -25.81591 -24.66859 -23.53554 -22.65410 -21.53387 -21.01833 -20.63835 -19.20347 -18.56869 -17.16035 -16.96436 -16.66005 -16.16326 -15.64021 -15.33311 -14.91193 -14.84415 -14.40503 -14.27867 -14.07689 -13.84672 -13.50158 -13.40557 -13.31319 -13.17508 -12.84997 -12.75294 -12.52905 -12.46750 -12.27268 -12.15262 -11.92896 -11.39158 -11.36053 -11.21199 -11.08815 -10.96819 -10.94090 -10.88267 -10.84596 -10.71729 -10.33271 -10.31291 -9.98502 -9.63868 -9.56345 -9.07396 -8.58027 -8.45858 -8.38050 -6.78361 -5.88411 -3.31835 2.83314 3.01899 3.30769 3.38389 3.39377 3.84911 4.16714 4.27883 4.38801 4.40347 4.62174 4.66611 4.88770 5.02350 5.04537 5.05635 5.13312 5.18012 5.20487 5.26934 5.32223 5.35511 5.40500 5.46100 5.47014 5.56870 5.63593 5.70123 5.74079 5.79164 5.82028 5.84758 5.94721 5.98924 6.06578 6.11459 6.15012 6.26595 6.30411 6.42670 6.49858 6.61845 6.75808 6.78045 6.80559 7.03145 7.41492 7.67063 7.73920 7.90830 8.28182 8.39684 9.06531 9.69433 10.27231 11.19980 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.002494 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.665152 B =11225.039663 C =11593.924454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.141 4.141 5 C 0.051 3.949 6 N -0.513 5.513 7 C 0.038 3.962 8 C 0.528 3.472 9 O -0.527 6.527 10 N -0.614 5.614 11 C 0.104 3.896 12 C -0.144 4.144 13 C 0.085 3.915 14 C 0.126 3.874 15 C 0.163 3.837 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.047 3.953 27 O -0.374 6.374 28 C 0.046 3.954 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.030 0.970 45 H 0.098 0.902 46 H 0.256 0.744 47 H 0.026 0.974 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.047 0.953 51 H 0.047 0.953 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.158 9.049 -5.072 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.179 4.179 5 C -0.076 4.076 6 N -0.237 5.237 7 C -0.093 4.093 8 C 0.315 3.685 9 O -0.402 6.402 10 N -0.350 5.350 11 C -0.019 4.019 12 C -0.182 4.182 13 C 0.043 3.957 14 C 0.004 3.996 15 C 0.037 3.963 16 N -0.316 5.316 17 C -0.382 4.382 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.205 1.205 25 C -0.018 4.018 26 C -0.031 4.031 27 O -0.293 6.293 28 C -0.081 4.081 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.116 0.884 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.065 0.935 51 H 0.065 0.935 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.328 10.078 -5.265 21.568 hybrid contribution -0.337 -1.400 0.867 1.680 sum -18.664 8.678 -4.398 21.048 Atomic orbital electron populations 1.21718 0.94383 1.01867 1.01927 1.22286 0.95482 0.99884 0.94453 0.89659 1.22921 0.96747 0.99879 0.98359 1.22784 0.96814 1.01289 0.86717 1.63267 1.26898 1.24827 1.08738 1.22121 0.93835 0.91402 1.01964 1.20031 0.89430 0.80178 0.78841 1.90692 1.62191 1.45861 1.41470 1.48573 1.11415 1.17444 1.57538 1.22079 0.95672 0.88421 0.95748 1.23021 0.96439 0.97658 1.01052 1.22702 0.97248 0.91556 0.84161 1.22073 0.82053 0.92495 1.03000 1.21137 0.89382 0.83797 1.01992 1.44066 1.76856 1.00961 1.09746 1.19142 1.19830 0.98923 1.00319 0.91402 1.25048 0.95937 0.98544 1.00046 1.70000 1.25041 1.25256 1.34413 0.86292 0.77950 0.78640 0.83865 1.21330 1.21462 1.20467 1.21589 0.93465 0.96851 0.89852 1.23083 0.98473 0.81253 1.00331 1.87653 1.90152 1.20402 1.31101 1.23141 0.88106 0.98419 0.98437 0.92690 0.92390 0.92373 0.90686 0.91570 0.89777 0.92943 0.91986 0.88170 0.92012 0.91778 0.89624 0.89375 0.89737 0.89890 0.95197 0.88408 0.93398 0.95582 0.91927 0.90044 0.93520 0.93455 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.30 37.16 0.35 -0.51 16 2 C -0.10 -0.80 3.63 -88.48 -0.32 -1.12 16 3 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.14 -1.21 6.41 -24.91 -0.16 -1.37 16 5 C 0.05 0.60 5.65 -2.83 -0.02 0.59 16 6 N -0.51 -6.20 4.85 -232.70 -1.13 -7.33 16 7 C 0.04 0.45 4.22 -4.97 -0.02 0.43 16 8 C 0.53 8.38 7.50 -10.99 -0.08 8.30 16 9 O -0.53 -10.24 15.81 5.56 0.09 -10.15 16 10 N -0.61 -9.66 3.33 -170.77 -0.57 -10.23 16 11 C 0.10 1.39 6.50 -2.95 -0.02 1.37 16 12 C -0.14 -2.32 5.87 -25.24 -0.15 -2.47 16 13 C 0.09 1.59 0.84 -89.65 -0.08 1.52 16 14 C 0.13 2.25 6.08 -2.88 -0.02 2.23 16 15 C 0.16 3.72 4.06 -3.91 -0.02 3.71 16 16 N -0.59 -14.12 2.98 -172.24 -0.51 -14.63 16 17 C -0.25 -6.56 9.66 -15.06 -0.15 -6.71 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.08 4.98 -17.43 -0.09 -0.01 16 20 N -0.90 -25.19 11.11 55.49 0.62 -24.57 16 21 Si 0.90 20.79 29.58 -169.99 -5.03 15.76 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.11 2.20 6.71 -3.53 -0.02 2.17 16 26 C 0.05 0.80 6.78 37.30 0.25 1.05 16 27 O -0.37 -7.11 10.28 -35.22 -0.36 -7.48 16 28 C 0.05 0.42 6.15 -2.30 -0.01 0.40 16 29 H 0.05 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.53 8.04 -51.93 -0.42 0.12 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.66 7.31 -51.93 -0.38 0.28 16 36 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 37 H 0.10 1.02 8.07 -51.93 -0.42 0.60 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.38 6.08 -51.93 -0.32 1.06 16 41 H 0.09 1.50 7.82 -51.93 -0.41 1.09 16 42 H 0.08 1.50 7.99 -51.93 -0.42 1.09 16 43 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 2.43 5.96 -51.93 -0.31 2.12 16 46 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 49 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.05 0.77 6.23 -51.93 -0.32 0.44 16 51 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 52 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -30.96 396.61 -10.72 -41.68 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -9.25 Total: 1.39 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.55 Total: 9.59 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -1.59 Total: -56.77 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.27 Total: -17.62 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.96 -10.72 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972551513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.435 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds