Wall clock time and date at job start Tue Mar 31 2020 20:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.69995 * 2 1 4 4 C 1.53188 * 109.58827 * 239.64137 * 2 1 3 5 5 H 1.09002 * 109.49964 * 65.59684 * 4 2 1 6 6 N 1.46497 * 109.49778 * 305.52563 * 4 2 1 7 7 C 1.34774 * 119.99890 * 155.06234 * 6 4 2 8 8 O 1.21275 * 120.00357 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99987 * 180.02562 * 7 6 4 10 10 N 1.46496 * 109.47193 * 180.02562 * 9 7 6 11 11 C 1.47193 * 119.78470 * 89.99701 * 10 9 7 12 12 C 1.52990 * 108.66805 * 251.95083 * 11 10 9 13 13 C 1.51775 * 110.88033 * 273.54117 * 12 11 10 14 14 C 1.51792 * 113.80860 * 66.99120 * 13 12 11 15 15 C 1.53053 * 110.75253 * 293.18362 * 14 13 12 16 16 C 1.33374 * 119.78204 * 269.72372 * 10 9 7 17 17 O 1.21276 * 119.89258 * 359.71811 * 16 10 9 18 18 C 1.53042 * 109.33994 * 185.56099 * 4 2 1 19 19 C 1.53042 * 109.53610 * 61.37963 * 18 4 2 20 20 C 1.53192 * 109.31499 * 298.63392 * 19 18 4 21 21 N 1.46930 * 108.77380 * 54.63662 * 20 19 18 22 22 C 1.36937 * 120.63028 * 126.41658 * 21 20 19 23 23 H 1.07996 * 119.99402 * 208.57310 * 22 21 20 24 24 C 1.38808 * 120.00396 * 28.56727 * 22 21 20 25 25 N 1.31627 * 119.99719 * 14.42906 * 24 22 21 26 26 Si 1.86796 * 120.00271 * 194.43094 * 24 22 21 27 27 H 1.48500 * 109.47254 * 90.00203 * 26 24 22 28 28 H 1.48507 * 109.47202 * 209.99965 * 26 24 22 29 29 H 1.48500 * 109.46794 * 329.99820 * 26 24 22 30 30 H 1.08994 * 109.47147 * 180.35847 * 1 2 3 31 31 H 1.08998 * 109.47468 * 300.36256 * 1 2 3 32 32 H 1.09005 * 109.46923 * 60.35954 * 1 2 3 33 33 H 0.97004 * 120.00188 * 335.07133 * 6 4 2 34 34 H 1.08999 * 109.47510 * 60.00014 * 9 7 6 35 35 H 1.09005 * 109.47256 * 299.99997 * 9 7 6 36 36 H 1.09000 * 109.60602 * 11.70938 * 11 10 9 37 37 H 1.09006 * 109.60632 * 132.19591 * 11 10 9 38 38 H 1.09001 * 109.19239 * 33.90550 * 12 11 10 39 39 H 1.09001 * 109.19599 * 153.22553 * 12 11 10 40 40 H 1.08993 * 108.61644 * 188.11402 * 13 12 11 41 41 H 1.09000 * 108.61420 * 305.88025 * 13 12 11 42 42 H 1.09002 * 109.22226 * 53.51491 * 14 13 12 43 43 H 1.09004 * 109.21875 * 172.89752 * 14 13 12 44 44 H 1.09001 * 109.63998 * 204.62373 * 15 14 13 45 45 H 1.08995 * 109.63544 * 325.02542 * 15 14 13 46 46 H 1.08995 * 109.46370 * 181.40125 * 18 4 2 47 47 H 1.08999 * 109.46217 * 301.37612 * 18 4 2 48 48 H 1.08993 * 109.50034 * 58.58878 * 19 18 4 49 49 H 1.09004 * 109.50085 * 178.68533 * 19 18 4 50 50 H 1.09000 * 109.59197 * 174.42284 * 20 19 18 51 51 H 1.08999 * 109.58793 * 294.85259 * 20 19 18 52 52 H 0.96996 * 119.99495 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 1 1.7656 -0.1672 -2.1368 6 7 1.4515 -2.0680 -1.3069 7 6 1.3297 -2.6970 -2.4926 8 8 1.7106 -2.1552 -3.5085 9 6 0.7201 -4.0738 -2.5561 10 7 0.7016 -4.5361 -3.9461 11 6 1.8488 -5.2860 -4.4826 12 6 2.6086 -4.3862 -5.4591 13 6 2.0138 -4.4764 -6.8525 14 6 0.6133 -3.9007 -6.9594 15 6 -0.3817 -4.7426 -6.1571 16 6 -0.3572 -4.2793 -4.7155 17 8 -1.3014 -3.6693 -4.2604 18 6 3.5676 -0.8480 -1.1708 19 6 3.9576 -1.6659 0.0625 20 6 3.4664 -0.9473 1.3231 21 7 2.0238 -0.7000 1.1946 22 6 1.1555 -1.1133 2.1695 23 1 0.1357 -1.3609 1.9146 24 6 1.5860 -1.2140 3.4853 25 7 2.7194 -0.6536 3.8515 26 14 0.5572 -2.1447 4.7361 27 1 0.9696 -3.5712 4.7531 28 1 0.7620 -1.5541 6.0832 29 1 -0.8778 -2.0486 4.3664 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 1.1470 -2.5016 -0.4944 34 1 -0.2990 -4.0381 -2.1711 35 1 1.3126 -4.7617 -1.9527 36 1 2.5087 -5.5787 -3.6659 37 1 1.4932 -6.1743 -5.0048 38 1 2.5541 -3.3543 -5.1121 39 1 3.6527 -4.6974 -5.4950 40 1 2.6640 -3.9403 -7.5438 41 1 1.9828 -5.5244 -7.1505 42 1 0.6140 -2.8813 -6.5735 43 1 0.3095 -3.8879 -8.0061 44 1 -1.3840 -4.6133 -6.5655 45 1 -0.0978 -5.7936 -6.2092 46 1 3.9375 -1.3446 -2.0678 47 1 4.0062 0.1473 -1.0998 48 1 3.4991 -2.6530 0.0044 49 1 5.0420 -1.7697 0.1022 50 1 3.6536 -1.5722 2.1964 51 1 3.9916 0.0017 1.4309 52 1 3.0200 -0.7237 4.7711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994369421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:52 Heat of formation + Delta-G solvation = -57.241234 kcal Electronic energy + Delta-G solvation = -31775.751201 eV Core-core repulsion = 27775.336917 eV Total energy + Delta-G solvation = -4000.414284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.69233 -39.37596 -37.51170 -36.73856 -34.68120 -33.89395 -32.42843 -31.73041 -31.18003 -29.81424 -28.54855 -26.40885 -25.74354 -25.00398 -24.02303 -22.12079 -20.92113 -20.74355 -20.46583 -18.90253 -18.69178 -17.41987 -17.15492 -16.69115 -16.33746 -15.30174 -15.18844 -14.90026 -14.78453 -14.30210 -14.16644 -13.91785 -13.81175 -13.68104 -13.49751 -13.32246 -13.10668 -12.87465 -12.75640 -12.57366 -12.36970 -11.98916 -11.86486 -11.54102 -11.27732 -11.23135 -11.00409 -10.97839 -10.89109 -10.81012 -10.72171 -10.59311 -10.51588 -10.11651 -10.02530 -9.75300 -9.71903 -9.63320 -9.32818 -8.68885 -8.55113 -8.43284 -6.70534 -5.82700 -3.28175 2.56595 2.86264 2.98434 3.33150 3.41024 3.41782 3.75978 4.33098 4.43380 4.55387 4.60149 4.64590 4.99311 5.06837 5.14879 5.18185 5.22349 5.25015 5.30775 5.32281 5.44554 5.48733 5.57368 5.59006 5.62202 5.74165 5.75331 5.79102 5.90444 5.95726 6.02546 6.12477 6.22934 6.24622 6.32284 6.37735 6.44264 6.51826 6.66456 6.66969 6.78064 6.93480 6.98971 7.13521 7.31190 7.36923 7.66131 7.76301 8.01616 8.17320 8.40091 8.65485 9.16579 9.79238 10.35895 11.24923 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.003203 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.494087 B = 8739.020049 C = 9230.872273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.038 0.962 4 C 0.137 3.863 5 H 0.074 0.926 6 N -0.699 5.699 7 C 0.496 3.504 8 O -0.545 6.545 9 C 0.090 3.910 10 N -0.589 5.589 11 C 0.116 3.884 12 C -0.154 4.154 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.134 4.134 16 C 0.521 3.479 17 O -0.547 6.547 18 C -0.119 4.119 19 C -0.139 4.139 20 C 0.170 3.830 21 N -0.586 5.586 22 C -0.254 4.254 23 H 0.072 0.928 24 C 0.004 3.996 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.408 0.592 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.045 0.955 50 H 0.090 0.910 51 H 0.016 0.984 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 -10.344 -17.887 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.030 3.970 5 H 0.092 0.908 6 N -0.350 5.350 7 C 0.280 3.720 8 O -0.424 6.424 9 C -0.037 4.037 10 N -0.320 5.320 11 C -0.007 4.007 12 C -0.193 4.193 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.174 4.174 16 C 0.309 3.691 17 O -0.425 6.425 18 C -0.158 4.158 19 C -0.178 4.178 20 C 0.045 3.955 21 N -0.310 5.310 22 C -0.384 4.384 23 H 0.089 0.911 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.244 0.756 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.108 0.892 51 H 0.034 0.966 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.213 -9.616 -18.182 20.569 hybrid contribution -0.359 -0.616 1.201 1.396 sum -0.146 -10.232 -16.981 19.826 Atomic orbital electron populations 1.21773 0.95558 1.01545 1.00398 1.20735 0.93379 0.93874 0.86828 0.94420 1.21487 0.92736 0.83116 0.99645 0.90827 1.45960 1.61544 1.18588 1.08957 1.20937 0.79100 0.87976 0.84003 1.90577 1.50252 1.67199 1.34324 1.21397 1.04173 0.94167 0.83915 1.47407 1.18313 1.55023 1.11306 1.21835 0.87215 0.93781 0.97869 1.21967 0.98880 1.03667 0.94740 1.21116 0.96036 1.00855 0.97330 1.21211 0.93987 1.00142 0.99762 1.21961 1.02336 1.01180 0.91933 1.20508 0.81553 0.78899 0.88156 1.90721 1.36015 1.41019 1.74721 1.21755 0.95565 1.00354 0.98105 1.22134 0.98787 0.99506 0.97375 1.20837 0.83075 0.97216 0.94412 1.44201 1.03132 1.64870 1.18819 1.19200 0.94645 1.38105 0.86423 0.91069 1.25089 0.97675 0.99719 0.96955 1.70014 1.22631 1.44947 1.17011 0.86315 0.79926 0.79620 0.81029 1.21502 1.21850 1.20428 0.92723 0.91864 0.94210 0.75588 0.87041 0.87707 0.89815 0.90646 0.88195 0.91201 0.91902 0.92386 0.91020 0.90995 0.88732 0.89506 0.93293 0.92095 0.92934 0.93591 0.89218 0.96553 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.72 37.16 0.29 -2.23 16 2 C 0.16 3.15 3.20 -67.56 -0.22 2.93 16 3 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.14 2.42 2.32 -67.81 -0.16 2.27 16 5 H 0.07 1.36 7.58 -51.93 -0.39 0.97 16 6 N -0.70 -11.43 3.47 -53.69 -0.19 -11.62 16 7 C 0.50 7.84 7.86 -10.99 -0.09 7.76 16 8 O -0.55 -9.95 13.88 5.56 0.08 -9.87 16 9 C 0.09 1.14 5.87 -5.19 -0.03 1.11 16 10 N -0.59 -7.03 1.96 -174.59 -0.34 -7.37 16 11 C 0.12 1.00 5.91 -3.67 -0.02 0.98 16 12 C -0.15 -1.45 5.74 -27.36 -0.16 -1.61 16 13 C -0.12 -0.92 5.27 -27.97 -0.15 -1.06 16 14 C -0.11 -1.03 5.67 -27.32 -0.15 -1.18 16 15 C -0.13 -1.27 5.56 -27.50 -0.15 -1.43 16 16 C 0.52 7.09 6.81 -11.25 -0.08 7.01 16 17 O -0.55 -9.84 16.59 5.56 0.09 -9.74 16 18 C -0.12 -2.07 5.58 -26.69 -0.15 -2.22 16 19 C -0.14 -2.54 5.93 -26.61 -0.16 -2.70 16 20 C 0.17 3.82 5.29 -3.71 -0.02 3.80 16 21 N -0.59 -13.32 2.65 -164.72 -0.44 -13.76 16 22 C -0.25 -6.32 8.63 -15.06 -0.13 -6.45 16 23 H 0.07 1.73 6.18 -52.49 -0.32 1.40 16 24 C 0.00 0.12 4.98 -17.43 -0.09 0.03 16 25 N -0.90 -24.96 11.07 55.49 0.61 -24.35 16 26 Si 0.90 20.70 29.58 -169.99 -5.03 15.68 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.05 1.01 6.38 -51.93 -0.33 0.68 16 31 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.41 6.78 7.77 -40.82 -0.32 6.46 16 34 H 0.11 1.49 7.37 -51.93 -0.38 1.11 16 35 H 0.10 1.03 7.85 -51.93 -0.41 0.62 16 36 H 0.08 0.63 7.77 -51.93 -0.40 0.23 16 37 H 0.08 0.49 6.72 -51.93 -0.35 0.14 16 38 H 0.10 1.33 5.70 -51.93 -0.30 1.04 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.36 7.88 -51.93 -0.41 -0.05 16 42 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.87 8.13 -51.93 -0.42 0.45 16 45 H 0.09 0.61 6.79 -51.93 -0.35 0.26 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.05 0.96 7.53 -51.93 -0.39 0.57 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 2.27 6.01 -51.93 -0.31 1.96 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -31.20 389.62 -9.63 -40.83 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.84 Total: 7.33 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -1.46 Total: 7.00 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.35 Total: -57.10 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.17 Total: -19.61 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.20 -9.63 -40.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994369421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.412 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds