Wall clock time and date at job start Tue Mar 31 2020 21:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.49995 * 2 1 4 4 C 1.53036 * 109.50288 * 120.07125 * 2 1 3 5 5 C 1.53040 * 109.54184 * 181.34723 * 4 2 1 6 6 C 1.53190 * 109.31330 * 298.63495 * 5 4 2 7 7 N 1.46930 * 108.77266 * 54.63233 * 6 5 4 8 8 C 1.34774 * 120.62642 * 126.37226 * 7 6 5 9 9 O 1.21347 * 120.00028 * 188.64239 * 8 7 6 10 10 C 1.49450 * 120.00275 * 8.64160 * 8 7 6 11 11 O 1.21352 * 119.99732 * 6.77502 * 10 8 7 12 12 N 1.34773 * 120.00365 * 186.77034 * 10 8 7 13 13 C 1.46495 * 120.00478 * 180.02562 * 12 10 8 14 14 H 1.09001 * 109.47414 * 34.99798 * 13 12 10 15 15 C 1.53005 * 109.47519 * 154.99864 * 13 12 10 16 16 C 1.53002 * 109.46865 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47596 * 300.00030 * 16 15 13 18 18 H 1.09001 * 109.46840 * 300.00656 * 17 16 15 19 19 N 1.46490 * 109.47385 * 180.02562 * 17 16 15 20 20 C 1.36940 * 120.00136 * 155.00077 * 19 17 16 21 21 H 1.07995 * 120.00140 * 0.02562 * 20 19 17 22 22 C 1.38819 * 119.99932 * 179.97438 * 20 19 17 23 23 N 1.31612 * 119.99639 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99977 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47310 * 89.99852 * 24 22 20 26 26 H 1.48505 * 109.47142 * 209.99804 * 24 22 20 27 27 H 1.48502 * 109.47183 * 329.99911 * 24 22 20 28 28 C 1.53005 * 109.47038 * 60.00076 * 17 16 15 29 29 C 1.52996 * 109.47090 * 274.99984 * 13 12 10 30 30 C 1.46925 * 118.74153 * 306.64396 * 7 6 5 31 31 H 1.08999 * 109.46883 * 299.92946 * 1 2 3 32 32 H 1.09000 * 109.47269 * 59.92403 * 1 2 3 33 33 H 1.08999 * 109.47377 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.45809 * 61.32528 * 4 2 1 35 35 H 1.09007 * 109.45836 * 301.37083 * 4 2 1 36 36 H 1.09000 * 109.49417 * 178.68160 * 5 4 2 37 37 H 1.08999 * 109.52144 * 58.60368 * 5 4 2 38 38 H 1.09000 * 109.58421 * 294.84858 * 6 5 4 39 39 H 1.08990 * 109.58764 * 174.41989 * 6 5 4 40 40 H 0.97002 * 119.99979 * 359.97438 * 12 10 8 41 41 H 1.08997 * 109.47156 * 300.00012 * 15 13 12 42 42 H 1.09002 * 109.46854 * 60.00128 * 15 13 12 43 43 H 1.09002 * 109.47100 * 60.00499 * 16 15 13 44 44 H 1.09005 * 109.46499 * 179.97438 * 16 15 13 45 45 H 0.97008 * 119.99936 * 335.00137 * 19 17 16 46 46 H 0.97008 * 119.99799 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.46854 * 60.00024 * 28 17 16 48 48 H 1.08997 * 109.47156 * 180.02562 * 28 17 16 49 49 H 1.09002 * 109.47279 * 299.99869 * 29 13 12 50 50 H 1.09005 * 109.47367 * 59.99832 * 29 13 12 51 51 H 1.09001 * 109.58576 * 173.14817 * 30 7 6 52 52 H 1.09003 * 109.58356 * 293.57154 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 1.2484 5 6 3.5709 -0.6941 1.2664 6 6 4.1060 -1.4255 0.0313 7 7 3.5052 -0.8282 -1.1692 8 6 4.2818 -0.3843 -2.1773 9 8 3.7897 0.2463 -3.0898 10 6 5.7489 -0.6687 -2.1714 11 8 6.2216 -1.4012 -1.3272 12 7 6.5471 -0.1118 -3.1037 13 6 7.9852 -0.3911 -3.0983 14 1 8.1547 -1.4184 -2.7756 15 6 8.5472 -0.2002 -4.5085 16 6 10.0493 -0.4913 -4.5025 17 6 10.7511 0.4685 -3.5397 18 1 10.5812 1.4957 -3.8625 19 7 12.1893 0.1902 -3.5344 20 6 13.0761 1.1751 -3.1896 21 1 12.7151 2.1569 -2.9211 22 6 14.4389 0.9112 -3.1842 23 7 15.2912 1.8579 -2.8533 24 14 15.0632 -0.7872 -3.6479 25 1 15.3107 -0.8412 -5.1112 26 1 16.3282 -1.0651 -2.9214 27 1 14.0470 -1.8057 -3.2799 28 6 10.1891 0.2776 -2.1294 29 6 8.6874 0.5683 -2.1353 30 6 2.0421 -0.7184 -1.2471 31 1 -0.3633 0.5127 0.8906 32 1 -0.3634 0.5150 -0.8893 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6973 -1.7571 1.2353 35 1 1.6578 -0.2244 2.1389 36 1 3.9334 -1.1886 2.1676 37 1 3.9159 0.3398 1.2549 38 1 3.8386 -2.4807 0.0872 39 1 5.1901 -1.3229 -0.0130 40 1 6.1693 0.4733 -3.7788 41 1 8.0470 -0.8837 -5.1945 42 1 8.3778 0.8271 -4.8311 43 1 10.2191 -1.5185 -4.1797 44 1 10.4496 -0.3557 -5.5073 45 1 12.5135 -0.6918 -3.7753 46 1 16.2436 1.6736 -2.8498 47 1 10.3588 -0.7495 -1.8066 48 1 10.6887 0.9617 -1.4435 49 1 8.5180 1.5956 -2.4579 50 1 8.2871 0.4323 -1.1306 51 1 1.7651 -0.1494 -2.1346 52 1 1.6031 -1.7148 -1.2975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034750321.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:23 Heat of formation + Delta-G solvation = -66.224813 kcal Electronic energy + Delta-G solvation = -29850.015543 eV Core-core repulsion = 25849.211701 eV Total energy + Delta-G solvation = -4000.803841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.26601 -39.56413 -38.17541 -37.94221 -35.29912 -34.08045 -33.05569 -32.26691 -31.02878 -30.54450 -28.29001 -27.45380 -26.35936 -24.13190 -22.89461 -22.68876 -22.44698 -20.99429 -20.72262 -20.11788 -19.53133 -17.91518 -17.42908 -17.27937 -16.26097 -16.14115 -15.68190 -15.42361 -14.97776 -14.77682 -14.54990 -14.40463 -14.12229 -13.92775 -13.82276 -13.51952 -13.38807 -13.05429 -12.98353 -12.70284 -12.57403 -12.28518 -12.23605 -12.00533 -11.83040 -11.72374 -11.49675 -11.30630 -11.24475 -10.99052 -10.90634 -10.89185 -10.82419 -10.66329 -10.29393 -10.17771 -9.87438 -9.57644 -9.40317 -9.20068 -9.07405 -8.89228 -7.26066 -5.76342 -3.11697 1.18301 2.06290 2.95455 3.22032 3.38173 3.41095 3.46073 4.06814 4.27717 4.34369 4.43236 4.59786 4.63786 4.74028 4.88100 4.89257 4.97365 5.05323 5.08919 5.14542 5.25781 5.30645 5.35737 5.42176 5.45606 5.47980 5.54141 5.54880 5.59434 5.65572 5.66723 5.71696 5.74172 5.78333 5.87508 5.94777 5.99096 6.09951 6.12706 6.15209 6.29942 6.39943 6.44812 6.57845 6.75471 6.86715 7.02149 7.05903 7.49777 7.78967 8.00415 8.42915 9.21700 9.94385 10.14200 11.42022 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.002030 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.696189 B =13792.898963 C =14189.981396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.137 4.137 6 C 0.068 3.932 7 N -0.582 5.582 8 C 0.508 3.492 9 O -0.524 6.524 10 C 0.508 3.492 11 O -0.512 6.512 12 N -0.690 5.690 13 C 0.141 3.859 14 H 0.093 0.907 15 C -0.120 4.120 16 C -0.124 4.124 17 C 0.181 3.819 18 H 0.056 0.944 19 N -0.749 5.749 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.132 4.132 29 C -0.125 4.125 30 C 0.112 3.888 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.142 0.858 40 H 0.411 0.589 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.056 0.944 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.094 0.906 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.728 -6.808 4.638 31.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.175 4.175 6 C -0.053 4.053 7 N -0.315 5.315 8 C 0.291 3.709 9 O -0.400 6.400 10 C 0.289 3.711 11 O -0.389 6.389 12 N -0.341 5.341 13 C 0.038 3.962 14 H 0.111 0.889 15 C -0.158 4.158 16 C -0.162 4.162 17 C 0.071 3.929 18 H 0.074 0.926 19 N -0.391 5.391 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.173 4.173 29 C -0.164 4.164 30 C -0.010 4.010 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.247 0.753 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.112 0.888 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.505 -6.774 4.791 31.613 hybrid contribution 0.288 -0.931 -0.418 1.061 sum -30.217 -7.705 4.372 31.489 Atomic orbital electron populations 1.21763 0.94133 1.02131 1.02238 1.21426 0.96112 1.00288 0.94813 0.90643 1.21630 0.95604 1.00778 0.97442 1.21961 0.95707 1.01585 0.98234 1.22901 1.03526 0.96609 0.82286 1.47946 1.06664 1.58939 1.17983 1.20202 0.87815 0.79992 0.82884 1.90747 1.75026 1.38310 1.35966 1.20063 0.87257 0.81332 0.82484 1.90508 1.75768 1.36853 1.35810 1.46022 1.08754 1.48178 1.31104 1.21318 0.76818 1.01031 0.96994 0.88945 1.21756 0.96882 1.02542 0.94669 1.21794 0.92952 1.00440 1.01052 1.20228 0.83854 0.97044 0.91760 0.92585 1.42788 1.01057 1.11968 1.83288 1.19078 0.87011 0.92887 1.38204 0.89221 1.24680 0.95813 0.97122 1.01645 1.69702 1.01735 1.32005 1.54786 0.86550 0.78255 0.85474 0.78240 1.21145 1.21822 1.20304 1.22184 0.92250 1.01910 1.00925 1.21904 0.96891 0.98862 0.98721 1.21726 0.78600 1.01203 0.99498 0.92153 0.92290 0.92411 0.91678 0.91572 0.90311 0.91557 0.91309 0.84076 0.75326 0.91524 0.91037 0.92017 0.91078 0.80688 0.93104 0.92503 0.91139 0.91809 0.92089 0.88778 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.20 37.16 0.34 -0.35 16 2 C -0.11 -0.68 2.85 -90.73 -0.26 -0.94 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -0.68 5.17 -26.69 -0.14 -0.82 16 5 C -0.14 -0.95 6.08 -26.61 -0.16 -1.11 16 6 C 0.07 0.59 5.98 -3.71 -0.02 0.56 16 7 N -0.58 -5.61 2.98 -173.54 -0.52 -6.12 16 8 C 0.51 5.89 7.73 -11.59 -0.09 5.80 16 9 O -0.52 -6.93 15.93 5.50 0.09 -6.84 16 10 C 0.51 6.07 7.70 -11.59 -0.09 5.99 16 11 O -0.51 -6.87 12.85 5.49 0.07 -6.80 16 12 N -0.69 -7.56 5.07 -54.24 -0.27 -7.84 16 13 C 0.14 1.70 2.45 -67.93 -0.17 1.54 16 14 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 15 C -0.12 -1.36 5.39 -26.73 -0.14 -1.50 16 16 C -0.12 -1.77 5.39 -26.73 -0.14 -1.91 16 17 C 0.18 3.27 2.77 -67.94 -0.19 3.08 16 18 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 19 N -0.75 -17.24 4.93 -53.43 -0.26 -17.50 16 20 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 22 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 23 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 24 Si 0.88 22.01 27.74 -169.99 -4.71 17.30 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 28 C -0.13 -2.21 5.50 -26.75 -0.15 -2.36 16 29 C -0.12 -1.69 5.49 -26.76 -0.15 -1.84 16 30 C 0.11 0.87 5.70 -3.93 -0.02 0.84 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.14 1.49 4.32 -54.78 -0.24 1.26 16 40 H 0.41 3.98 8.09 -40.82 -0.33 3.65 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.36 8.19 5.66 -40.82 -0.23 7.96 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.09 0.82 7.00 -51.93 -0.36 0.46 16 52 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -32.08 401.18 -9.60 -41.68 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -9.18 Total: 8.44 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.63 Total: 0.10 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.28 Total: -59.92 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.16 Total: -13.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.08 -9.60 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034750321.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.547 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds