Wall clock time and date at job start Tue Mar 31 2020 21:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53045 * 109.46120 * 2 1 4 4 C 1.53190 * 109.31716 * 181.37166 * 3 2 1 5 5 N 1.46924 * 108.77364 * 305.36644 * 4 3 2 6 6 C 1.34785 * 120.62541 * 233.58522 * 5 4 3 7 7 O 1.21347 * 119.99750 * 7.19221 * 6 5 4 8 8 C 1.49445 * 119.99684 * 187.19386 * 6 5 4 9 9 O 1.21350 * 120.00220 * 6.29213 * 8 6 5 10 10 N 1.34778 * 119.99987 * 186.29273 * 8 6 5 11 11 C 1.46927 * 120.63155 * 352.94409 * 10 8 6 12 12 C 1.53191 * 108.77249 * 233.63110 * 11 10 8 13 13 C 1.53043 * 109.30992 * 305.35636 * 12 11 10 14 14 H 1.08996 * 109.45265 * 301.35431 * 13 12 11 15 15 N 1.46501 * 109.45653 * 181.38825 * 13 12 11 16 16 C 1.36937 * 120.00064 * 84.93788 * 15 13 12 17 17 H 1.07998 * 119.99808 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00303 * 179.97438 * 16 15 13 19 19 N 1.31628 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00185 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46939 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47229 * 300.00250 * 20 18 16 23 23 H 1.48498 * 109.46750 * 60.00368 * 20 18 16 24 24 C 1.53037 * 109.53436 * 61.37164 * 13 12 11 25 25 H 1.08997 * 109.50051 * 58.61618 * 24 13 12 26 26 C 1.53001 * 109.49539 * 178.67862 * 24 13 12 27 27 C 1.46926 * 120.63129 * 172.96193 * 10 8 6 28 28 C 1.46926 * 118.74327 * 53.85727 * 5 4 3 29 29 C 1.53044 * 109.45073 * 120.05765 * 2 1 3 30 30 H 1.08992 * 109.47030 * 60.00188 * 1 2 3 31 31 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47230 * 299.99925 * 1 2 3 33 33 H 1.08991 * 109.46317 * 240.02368 * 2 1 3 34 34 H 1.08996 * 109.49605 * 61.41580 * 3 2 1 35 35 H 1.09004 * 109.49492 * 301.32376 * 3 2 1 36 36 H 1.08999 * 109.58681 * 185.57239 * 4 3 2 37 37 H 1.09010 * 109.58335 * 65.14817 * 4 3 2 38 38 H 1.09001 * 109.58123 * 353.41153 * 11 10 8 39 39 H 1.08996 * 109.59002 * 113.83639 * 11 10 8 40 40 H 1.09003 * 109.49464 * 185.40876 * 12 11 10 41 41 H 1.08994 * 109.50299 * 65.31307 * 12 11 10 42 42 H 0.96998 * 120.00384 * 264.93002 * 15 13 12 43 43 H 0.96994 * 119.99811 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47354 * 60.00310 * 26 24 13 45 45 H 1.09008 * 109.47193 * 179.97438 * 26 24 13 46 46 H 1.08994 * 109.47525 * 300.00022 * 26 24 13 47 47 H 1.09005 * 109.58928 * 6.58018 * 27 10 8 48 48 H 1.09005 * 109.58805 * 246.15957 * 27 10 8 49 49 H 1.08994 * 109.58689 * 65.92541 * 28 5 4 50 50 H 1.08996 * 109.58689 * 186.35312 * 28 5 4 51 51 H 1.09001 * 109.49938 * 298.57552 * 29 2 1 52 52 H 1.08996 * 109.49722 * 58.63917 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4393 -0.0346 5 7 4.0676 0.6240 1.0824 6 6 4.9617 1.1279 1.9562 7 8 5.2658 2.3014 1.9040 8 6 5.5783 0.2412 2.9891 9 8 5.3630 -0.9529 2.9705 10 7 6.3736 0.7677 3.9413 11 6 6.7686 2.1819 3.8889 12 6 8.2960 2.2704 3.9674 13 6 8.7826 1.5277 5.2139 14 1 8.3258 1.9680 6.1002 15 7 10.2402 1.6385 5.3099 16 6 10.8060 2.7360 5.9019 17 1 10.1776 3.5202 6.2976 18 6 12.1871 2.8408 5.9934 19 7 12.9530 1.8853 5.5107 20 14 12.9588 4.3384 6.8003 21 1 14.4379 4.2093 6.7710 22 1 12.5544 5.5619 6.0623 23 1 12.4977 4.4345 8.2086 24 6 8.3887 0.0521 5.1167 25 1 8.8252 -0.3826 4.2176 26 6 8.9042 -0.6961 6.3477 27 6 6.8624 -0.0616 5.0512 28 6 3.5754 -0.7530 1.2253 29 6 2.0396 -0.7228 1.2490 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8931 -0.5134 -0.8902 34 1 1.6976 1.9498 0.9022 35 1 1.6574 1.9640 -0.8778 36 1 3.9416 2.4596 0.0649 37 1 3.9145 1.0142 -0.9779 38 1 6.4246 2.6229 2.9534 39 1 6.3279 2.7159 4.7308 40 1 8.5972 3.3163 4.0263 41 1 8.7329 1.8150 3.0787 42 1 10.8047 0.9343 4.9543 43 1 13.9180 1.9583 5.5750 44 1 8.4665 -0.2619 7.2466 45 1 8.6230 -1.7470 6.2783 46 1 9.9899 -0.6126 6.3955 47 1 6.5803 -1.1010 4.8827 48 1 6.4294 0.2893 5.9880 49 1 3.9188 -1.3531 0.3828 50 1 3.9483 -1.1795 2.1565 51 1 1.6973 -0.1956 2.1396 52 1 1.6566 -1.7432 1.2606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036203946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:21 Heat of formation + Delta-G solvation = -37.290593 kcal Electronic energy + Delta-G solvation = -30685.505971 eV Core-core repulsion = 26685.956812 eV Total energy + Delta-G solvation = -3999.549159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.26615 -39.40167 -38.05177 -37.75445 -34.90180 -33.98737 -32.73567 -31.56088 -31.34511 -29.38487 -28.81863 -26.99922 -25.46209 -24.38975 -23.69159 -22.88113 -22.04228 -21.60268 -20.69499 -19.70340 -19.12810 -17.27828 -17.11838 -16.88549 -16.24800 -16.08390 -15.14507 -15.04771 -14.87909 -14.62802 -14.51117 -14.24901 -13.99391 -13.82588 -13.67044 -13.54330 -13.28560 -13.07880 -12.96400 -12.46138 -12.34567 -12.25632 -12.16653 -11.85376 -11.58975 -11.56388 -11.44461 -11.18572 -11.11667 -10.92832 -10.82629 -10.77620 -10.69600 -10.47881 -10.21371 -10.04899 -9.71198 -9.61136 -9.05989 -9.00866 -8.70236 -8.56948 -6.92808 -5.75177 -3.03580 1.32459 2.19724 3.10065 3.32094 3.44735 3.49421 3.50089 4.06398 4.37587 4.41127 4.45655 4.59715 4.75321 4.95826 5.03200 5.12522 5.17435 5.21121 5.26499 5.26900 5.35991 5.42995 5.47905 5.50406 5.56757 5.58728 5.64500 5.66977 5.72371 5.74287 5.80218 5.80924 5.90504 5.96520 6.04285 6.08109 6.10999 6.30076 6.39180 6.44603 6.45333 6.51344 6.66785 6.83713 6.91334 6.93647 7.09969 7.34157 7.66300 7.70820 7.93287 8.43236 9.54435 10.12062 10.47120 11.47322 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025126 B = 0.002397 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.098088 B =11680.316088 C =12394.710822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.128 4.128 4 C 0.105 3.895 5 N -0.580 5.580 6 C 0.512 3.488 7 O -0.509 6.509 8 C 0.506 3.494 9 O -0.526 6.526 10 N -0.565 5.565 11 C 0.050 3.950 12 C -0.147 4.147 13 C 0.181 3.819 14 H 0.048 0.952 15 N -0.721 5.721 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.292 1.292 22 H -0.286 1.286 23 H -0.287 1.287 24 C -0.109 4.109 25 H 0.070 0.930 26 C -0.136 4.136 27 C 0.114 3.886 28 C 0.062 3.938 29 C -0.129 4.129 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.051 0.949 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.148 0.852 51 H 0.065 0.935 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.860 -5.707 -10.164 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.166 4.166 4 C -0.017 4.017 5 N -0.313 5.313 6 C 0.296 3.704 7 O -0.386 6.386 8 C 0.290 3.710 9 O -0.406 6.406 10 N -0.295 5.295 11 C -0.071 4.071 12 C -0.188 4.188 13 C 0.071 3.929 14 H 0.066 0.934 15 N -0.361 5.361 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.129 4.129 25 H 0.089 0.911 26 C -0.193 4.193 27 C -0.008 4.008 28 C -0.059 4.059 29 C -0.167 4.167 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.165 0.835 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.164 0.836 51 H 0.084 0.916 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.726 -5.533 -10.083 27.270 hybrid contribution 0.725 0.674 0.227 1.015 sum -24.001 -4.859 -9.856 26.397 Atomic orbital electron populations 1.21822 0.94993 1.01778 1.01786 1.21181 0.95765 0.95883 0.98660 1.21971 0.94706 0.96993 1.02920 1.21760 0.94179 0.97285 0.88459 1.47997 1.41158 1.15287 1.26904 1.20254 0.80140 0.87602 0.82398 1.90362 1.60319 1.16757 1.71184 1.19920 0.80807 0.87730 0.82581 1.90403 1.60958 1.15379 1.73842 1.48156 1.45103 1.12907 1.23360 1.23355 0.97169 0.79121 1.07445 1.22635 0.92419 1.02712 1.01072 1.20259 0.86642 0.91182 0.94857 0.93445 1.42395 0.99311 1.23952 1.70451 1.19175 0.89884 0.97763 1.29951 0.91291 1.24729 0.96185 0.98249 1.01811 1.69652 1.03787 1.33389 1.51323 0.86289 0.78229 0.82604 0.79188 1.21782 1.21324 1.21338 1.21729 0.93096 0.98403 0.99662 0.91142 1.21661 1.03191 0.97954 0.96535 1.21925 0.94870 0.96061 0.87988 1.23119 0.93762 0.81286 1.07730 1.22087 0.95450 1.01103 0.98076 0.92684 0.92590 0.92699 0.90981 0.91347 0.90552 0.88570 0.90980 0.83534 0.91858 0.90495 0.92457 0.78256 0.93517 0.93023 0.93793 0.90634 0.89091 0.90916 0.91414 0.83560 0.91627 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.10 -0.61 2.68 -90.57 -0.24 -0.86 16 3 C -0.13 -0.88 5.36 -26.61 -0.14 -1.02 16 4 C 0.11 0.91 6.44 -3.71 -0.02 0.89 16 5 N -0.58 -6.29 2.97 -173.01 -0.51 -6.80 16 6 C 0.51 6.90 7.67 -11.58 -0.09 6.81 16 7 O -0.51 -7.61 12.44 5.50 0.07 -7.55 16 8 C 0.51 7.32 7.62 -11.59 -0.09 7.23 16 9 O -0.53 -7.83 12.55 5.50 0.07 -7.76 16 10 N -0.56 -8.36 2.97 -173.28 -0.51 -8.88 16 11 C 0.05 0.77 6.18 -3.71 -0.02 0.74 16 12 C -0.15 -2.68 5.66 -26.61 -0.15 -2.83 16 13 C 0.18 3.52 2.19 -67.89 -0.15 3.37 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 N -0.72 -17.62 4.41 -53.39 -0.24 -17.85 16 16 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 C -0.11 -1.81 2.46 -90.50 -0.22 -2.03 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 C -0.14 -2.18 9.03 37.16 0.34 -1.85 16 27 C 0.11 1.63 5.73 -3.71 -0.02 1.60 16 28 C 0.06 0.59 6.06 -3.48 -0.02 0.57 16 29 C -0.13 -0.95 5.38 -26.38 -0.14 -1.09 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.93 7.00 -51.93 -0.36 0.56 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.15 2.31 3.89 -56.65 -0.22 2.09 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.38 10.08 7.50 -40.82 -0.31 9.77 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.07 1.44 7.36 -51.93 -0.38 1.06 16 47 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.15 1.66 4.19 -55.42 -0.23 1.43 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -30.23 395.92 -9.36 -39.59 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -9.02 Total: 9.21 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.88 Total: 4.01 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.54 Total: -60.78 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.14 Total: -15.31 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.23 -9.36 -39.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036203946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.302 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds