Wall clock time and date at job start Tue Mar 31 2020 21:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53040 * 109.46368 * 2 1 4 4 C 1.53192 * 109.31308 * 181.36819 * 3 2 1 5 5 N 1.46927 * 108.77817 * 305.36734 * 4 3 2 6 6 C 1.34779 * 120.62757 * 233.58644 * 5 4 3 7 7 O 1.21351 * 119.99686 * 174.94609 * 6 5 4 8 8 C 1.49442 * 120.00096 * 355.22023 * 6 5 4 9 9 O 1.21353 * 120.00024 * 85.13838 * 8 6 5 10 10 N 1.34776 * 120.00098 * 265.13832 * 8 6 5 11 11 C 1.46926 * 120.63116 * 5.06165 * 10 8 6 12 12 C 1.53194 * 108.77380 * 126.37180 * 11 10 8 13 13 C 1.53038 * 109.31322 * 54.63465 * 12 11 10 14 14 H 1.09003 * 109.45738 * 178.61005 * 13 12 11 15 15 N 1.46501 * 109.45808 * 58.65530 * 13 12 11 16 16 C 1.36936 * 119.99941 * 85.00279 * 15 13 12 17 17 H 1.08003 * 120.00222 * 359.97438 * 16 15 13 18 18 C 1.38817 * 120.00069 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99966 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00205 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47176 * 89.99476 * 20 18 16 22 22 H 1.48497 * 109.47056 * 209.99639 * 20 18 16 23 23 H 1.48500 * 109.46936 * 329.99302 * 20 18 16 24 24 C 1.53042 * 109.53831 * 298.63735 * 13 12 11 25 25 H 1.09003 * 109.49463 * 301.40877 * 24 13 12 26 26 C 1.53004 * 109.49234 * 181.35031 * 24 13 12 27 27 C 1.46935 * 120.62896 * 184.78690 * 10 8 6 28 28 C 1.46924 * 118.74036 * 53.85871 * 5 4 3 29 29 C 1.53050 * 109.44628 * 120.06356 * 2 1 3 30 30 H 1.08994 * 109.46622 * 59.99888 * 1 2 3 31 31 H 1.08996 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47282 * 300.00219 * 1 2 3 33 33 H 1.08999 * 109.46227 * 240.01935 * 2 1 3 34 34 H 1.08999 * 109.49488 * 61.41826 * 3 2 1 35 35 H 1.08998 * 109.49633 * 301.32531 * 3 2 1 36 36 H 1.09003 * 109.58599 * 185.57352 * 4 3 2 37 37 H 1.09000 * 109.70187 * 65.22172 * 4 3 2 38 38 H 1.09006 * 109.58425 * 246.15697 * 11 10 8 39 39 H 1.08994 * 109.58589 * 6.58184 * 11 10 8 40 40 H 1.09000 * 109.49133 * 174.58700 * 12 11 10 41 41 H 1.08993 * 109.49632 * 294.68430 * 12 11 10 42 42 H 0.97000 * 120.00302 * 264.99491 * 15 13 12 43 43 H 0.96997 * 119.99980 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.47547 * 60.00001 * 26 24 13 45 45 H 1.09000 * 109.46711 * 179.97438 * 26 24 13 46 46 H 1.08994 * 109.47070 * 299.99515 * 26 24 13 47 47 H 1.08994 * 109.58509 * 353.41259 * 27 10 8 48 48 H 1.08997 * 109.58224 * 113.84414 * 27 10 8 49 49 H 1.09002 * 109.58371 * 65.92401 * 28 5 4 50 50 H 1.08996 * 109.58573 * 186.35500 * 28 5 4 51 51 H 1.09000 * 109.49497 * 298.56551 * 29 2 1 52 52 H 1.08994 * 109.50034 * 58.66960 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4429 0.0000 4 6 3.5715 1.4391 -0.0345 5 7 4.0677 0.6237 1.0825 6 6 4.9617 1.1275 1.9563 7 8 5.2946 0.4781 2.9259 8 6 5.5384 2.4881 1.7343 9 8 4.9433 3.4706 2.1257 10 7 6.7194 2.6241 1.0994 11 6 7.3981 1.4557 0.5224 12 6 7.7042 1.7412 -0.9512 13 6 8.4970 3.0457 -1.0600 14 1 8.7374 3.2384 -2.1055 15 7 9.7366 2.9293 -0.2878 16 6 10.8458 2.3612 -0.8552 17 1 10.8068 1.9986 -1.8718 18 6 12.0202 2.2504 -0.1235 19 7 12.0677 2.6918 1.1156 20 14 13.5332 1.4747 -0.8972 21 1 14.3414 2.5260 -1.5657 22 1 14.3480 0.8198 0.1575 23 1 13.1130 0.4618 -1.8985 24 6 7.6591 4.2014 -0.5079 25 1 6.7256 4.2729 -1.0661 26 6 8.4394 5.5100 -0.6480 27 6 7.3498 3.9446 0.9658 28 6 3.5753 -0.7532 1.2254 29 6 2.0395 -0.7230 1.2490 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8932 -0.5136 -0.8902 34 1 1.6977 1.9497 0.9023 35 1 1.6575 1.9639 -0.8777 36 1 3.9418 2.4594 0.0650 37 1 3.9167 1.0155 -0.9776 38 1 8.3283 1.2712 1.0598 39 1 6.7503 0.5824 0.5985 40 1 8.2923 0.9224 -1.3658 41 1 6.7703 1.8359 -1.5051 42 1 9.7716 3.2547 0.6253 43 1 12.8884 2.6147 1.6268 44 1 8.6593 5.6912 -1.7001 45 1 7.8421 6.3329 -0.2551 46 1 9.3722 5.4385 -0.0888 47 1 6.6701 4.7129 1.3342 48 1 8.2760 3.9671 1.5400 49 1 3.9187 -1.3533 0.3827 50 1 3.9482 -1.1798 2.1565 51 1 1.6973 -0.1957 2.1396 52 1 1.6569 -1.7435 1.2603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036203950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:25 Heat of formation + Delta-G solvation = -65.566376 kcal Electronic energy + Delta-G solvation = -31502.447003 eV Core-core repulsion = 27501.671714 eV Total energy + Delta-G solvation = -4000.775289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.03979 -39.42714 -38.04515 -37.45657 -34.39962 -34.24062 -32.89177 -31.52843 -31.47250 -29.26353 -28.84204 -26.94260 -25.52540 -24.22509 -23.71441 -23.50420 -22.21076 -21.75749 -20.53479 -19.13669 -18.49788 -17.57209 -17.35266 -16.87844 -16.40505 -15.18210 -15.14378 -15.00001 -14.85011 -14.56479 -14.45076 -14.28544 -14.03901 -13.84444 -13.72028 -13.44942 -13.27731 -13.12891 -12.81834 -12.58740 -12.28183 -12.23017 -12.18534 -11.67644 -11.63702 -11.48369 -11.35702 -11.26316 -11.15260 -10.93914 -10.84781 -10.79731 -10.73647 -10.56546 -10.51001 -10.22306 -9.90489 -9.60775 -9.42545 -8.98488 -8.94302 -8.43469 -7.02107 -5.81658 -3.10898 2.14239 2.20247 2.64773 3.34822 3.40048 3.45492 3.47519 4.16239 4.35942 4.42974 4.48175 4.54746 4.74223 4.94425 5.01789 5.08252 5.14373 5.20603 5.27319 5.27676 5.30952 5.42626 5.43348 5.46723 5.53041 5.55770 5.62072 5.64140 5.69975 5.71646 5.77435 5.82660 5.83657 5.96415 6.02295 6.07225 6.16039 6.20530 6.24359 6.29613 6.42124 6.48406 6.61286 6.67334 6.83739 6.90806 6.97937 7.39576 7.65559 7.75711 7.96495 8.36351 9.48057 10.03683 10.38350 11.40564 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.003043 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.195313 B = 9200.671064 C = 9624.394928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.129 4.129 4 C 0.105 3.895 5 N -0.599 5.599 6 C 0.522 3.478 7 O -0.513 6.513 8 C 0.513 3.487 9 O -0.529 6.529 10 N -0.580 5.580 11 C 0.114 3.886 12 C -0.147 4.147 13 C 0.178 3.822 14 H 0.054 0.946 15 N -0.719 5.719 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.905 3.095 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.107 4.107 25 H 0.067 0.933 26 C -0.137 4.137 27 C 0.116 3.884 28 C 0.109 3.891 29 C -0.129 4.129 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.095 0.905 51 H 0.068 0.932 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.527 -3.766 -5.208 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.167 4.167 4 C -0.017 4.017 5 N -0.335 5.335 6 C 0.305 3.695 7 O -0.387 6.387 8 C 0.295 3.705 9 O -0.406 6.406 10 N -0.312 5.312 11 C -0.008 4.008 12 C -0.188 4.188 13 C 0.068 3.932 14 H 0.072 0.928 15 N -0.361 5.361 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.127 4.127 25 H 0.085 0.915 26 C -0.195 4.195 27 C -0.005 4.005 28 C -0.013 4.013 29 C -0.167 4.167 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.114 0.886 51 H 0.087 0.913 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.488 -3.673 -4.550 22.269 hybrid contribution 0.950 -0.460 -0.104 1.060 sum -20.538 -4.132 -4.654 21.460 Atomic orbital electron populations 1.21815 0.94862 1.01766 1.01919 1.21147 0.95869 0.95812 0.98390 1.21970 0.94445 0.97026 1.03228 1.21822 0.94809 0.95998 0.89113 1.48110 1.42949 1.14437 1.28004 1.20385 0.79611 0.86503 0.83009 1.90794 1.60727 1.58985 1.28166 1.20074 0.82081 0.89207 0.79098 1.90770 1.60687 1.38145 1.50998 1.48166 1.19840 1.10450 1.52780 1.21805 0.97961 0.85346 0.95736 1.22536 0.99723 1.02481 0.94109 1.20223 0.86838 0.90343 0.95808 0.92846 1.42484 1.06685 1.72434 1.14517 1.19192 0.89246 1.31654 0.97016 0.91222 1.24721 0.97997 1.01782 0.96180 1.69645 1.27288 1.51988 1.08941 0.86234 0.83425 0.78804 0.77941 1.21806 1.21875 1.20839 1.21631 0.98864 0.97050 0.95173 0.91482 1.21664 1.00808 0.94869 1.02152 1.21717 0.98300 0.83007 0.97514 1.21798 0.94005 0.81821 1.03703 1.22067 0.94810 1.01246 0.98606 0.92554 0.92599 0.92650 0.90796 0.91107 0.90346 0.89573 0.90573 0.89011 0.91750 0.90418 0.93238 0.78079 0.93444 0.92644 0.93663 0.90935 0.89421 0.90030 0.90789 0.88645 0.91290 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.09 -0.64 2.68 -90.57 -0.24 -0.88 16 3 C -0.13 -1.01 5.36 -26.61 -0.14 -1.16 16 4 C 0.11 1.02 6.32 -3.71 -0.02 1.00 16 5 N -0.60 -7.18 2.97 -173.01 -0.51 -7.69 16 6 C 0.52 8.37 5.49 -11.59 -0.06 8.30 16 7 O -0.51 -9.71 16.52 5.50 0.09 -9.62 16 8 C 0.51 8.77 5.60 -11.59 -0.06 8.71 16 9 O -0.53 -10.06 16.31 5.49 0.09 -9.97 16 10 N -0.58 -9.56 2.98 -173.54 -0.52 -10.07 16 11 C 0.11 1.87 6.07 -3.71 -0.02 1.84 16 12 C -0.15 -2.31 5.78 -26.61 -0.15 -2.46 16 13 C 0.18 3.15 2.53 -67.89 -0.17 2.97 16 14 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 15 N -0.72 -16.08 3.64 -53.38 -0.19 -16.28 16 16 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 17 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 20 Si 0.90 21.61 29.55 -169.99 -5.02 16.59 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 C -0.11 -1.64 2.65 -90.72 -0.24 -1.88 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 C -0.14 -2.07 9.06 37.16 0.34 -1.74 16 27 C 0.12 1.91 5.41 -3.93 -0.02 1.89 16 28 C 0.11 1.05 6.47 -3.49 -0.02 1.03 16 29 C -0.13 -0.99 5.38 -26.38 -0.14 -1.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.98 6.23 -51.93 -0.32 0.65 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.81 7.74 -51.93 -0.40 1.40 16 39 H 0.06 0.97 6.37 -51.93 -0.33 0.64 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.38 9.31 5.94 -40.82 -0.24 9.06 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 1.29 7.54 -51.93 -0.39 0.90 16 47 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 48 H 0.08 1.50 6.64 -51.93 -0.34 1.16 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.10 1.07 7.00 -51.93 -0.36 0.70 16 51 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 52 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -30.93 400.55 -9.25 -40.18 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -9.07 Total: 7.70 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -0.88 Total: 9.32 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.50 Total: -60.23 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.18 Total: -19.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.93 -9.25 -40.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036203950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.386 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds