Wall clock time and date at job start Tue Mar 31 2020 21:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53042 * 109.44771 * 2 1 4 4 C 1.53190 * 109.30992 * 181.37800 * 3 2 1 5 5 N 1.46927 * 108.78078 * 305.36574 * 4 3 2 6 6 C 1.34772 * 120.63547 * 233.63535 * 5 4 3 7 7 O 1.21348 * 120.00733 * 172.91750 * 6 5 4 8 8 C 1.49456 * 119.99725 * 352.91792 * 6 5 4 9 9 O 1.21351 * 120.00177 * 6.30773 * 8 6 5 10 10 N 1.34773 * 120.00123 * 186.30946 * 8 6 5 11 11 C 1.46927 * 120.63058 * 6.65864 * 10 8 6 12 12 C 1.52763 * 109.01088 * 233.58789 * 11 10 8 13 13 C 1.53046 * 109.38150 * 305.58663 * 12 11 10 14 14 H 1.09002 * 109.44869 * 181.25325 * 13 12 11 15 15 N 1.46495 * 109.45874 * 301.21890 * 13 12 11 16 16 C 1.36943 * 120.00324 * 275.06957 * 15 13 12 17 17 H 1.08000 * 119.99425 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00176 * 180.02562 * 16 15 13 19 19 N 1.31611 * 120.00158 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99632 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47255 * 59.99984 * 20 18 16 22 22 H 1.48508 * 109.46843 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47363 * 299.99689 * 20 18 16 24 24 C 1.53041 * 109.53597 * 61.24119 * 13 12 11 25 25 H 1.08991 * 109.52921 * 58.60132 * 24 13 12 26 26 C 1.53002 * 109.49537 * 178.68604 * 24 13 12 27 27 C 1.46931 * 120.63418 * 186.94210 * 10 8 6 28 28 C 1.46922 * 118.73411 * 53.60714 * 5 4 3 29 29 C 1.53039 * 109.46138 * 120.06050 * 2 1 3 30 30 H 1.09003 * 109.46745 * 299.96346 * 1 2 3 31 31 H 1.08998 * 109.47030 * 59.96463 * 1 2 3 32 32 H 1.08995 * 109.46830 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46045 * 240.03854 * 2 1 3 34 34 H 1.08998 * 109.50056 * 301.33537 * 3 2 1 35 35 H 1.09000 * 109.49305 * 61.43005 * 3 2 1 36 36 H 1.09005 * 109.58644 * 185.58161 * 4 3 2 37 37 H 1.08997 * 109.59084 * 65.15584 * 4 3 2 38 38 H 1.09004 * 109.58885 * 353.42080 * 11 10 8 39 39 H 1.09003 * 109.59181 * 113.84497 * 11 10 8 40 40 H 1.08996 * 109.56675 * 185.55272 * 12 11 10 41 41 H 1.08993 * 109.38816 * 65.51288 * 12 11 10 42 42 H 0.97004 * 120.00425 * 95.06399 * 15 13 12 43 43 H 0.96994 * 120.00157 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.47223 * 179.83724 * 26 24 13 45 45 H 1.08996 * 109.46855 * 299.83526 * 26 24 13 46 46 H 1.08997 * 109.47230 * 59.83573 * 26 24 13 47 47 H 1.09003 * 109.58442 * 246.15543 * 27 10 8 48 48 H 1.08997 * 109.58202 * 6.43468 * 27 10 8 49 49 H 1.09008 * 109.58779 * 186.60684 * 28 5 4 50 50 H 1.09001 * 109.58984 * 66.18082 * 28 5 4 51 51 H 1.08996 * 109.50214 * 298.58223 * 29 2 1 52 52 H 1.09010 * 109.49590 * 58.64351 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0396 1.4431 0.0000 4 6 3.5711 1.4396 -0.0348 5 7 4.0677 0.6243 1.0821 6 6 4.9610 1.1284 1.9563 7 8 5.2665 0.4947 2.9451 8 6 5.5754 2.4680 1.7080 9 8 5.1875 3.1515 0.7833 10 7 6.5603 2.9170 2.5110 11 6 7.1409 2.0462 3.5422 12 6 7.0722 2.7589 4.8916 13 6 7.7420 4.1302 4.7765 14 1 7.7133 4.6306 5.7444 15 7 9.1350 3.9592 4.3565 16 6 10.1055 3.7078 5.2893 17 1 9.8440 3.6361 6.3347 18 6 11.4255 3.5464 4.8913 19 7 11.7443 3.6343 3.6174 20 14 12.7494 3.2042 6.1640 21 1 12.4335 1.9421 6.8798 22 1 14.0647 3.0729 5.4870 23 1 12.8026 4.3250 7.1367 24 6 6.9979 4.9779 3.7421 25 1 5.9553 5.0853 4.0411 26 6 7.6482 6.3599 3.6515 27 6 7.0696 4.2886 2.3759 28 6 3.5714 -0.7509 1.2282 29 6 2.0399 -0.7228 1.2489 30 1 -0.3633 0.5133 0.8904 31 1 -0.3633 0.5144 -0.8897 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8932 -0.5132 -0.8903 34 1 1.6569 1.9641 -0.8776 35 1 1.6973 1.9497 0.9024 36 1 3.9412 2.4600 0.0649 37 1 3.9143 1.0147 -0.9781 38 1 6.5773 1.1146 3.5935 39 1 8.1814 1.8331 3.2972 40 1 7.5883 2.1641 5.6453 41 1 6.0291 2.8867 5.1807 42 1 9.3700 4.0239 3.4175 43 1 12.6666 3.5211 3.3393 44 1 7.1197 6.9623 2.9126 45 1 7.5969 6.8500 4.6237 46 1 8.6910 6.2519 3.3535 47 1 8.1042 4.2621 2.0338 48 1 6.4606 4.8352 1.6560 49 1 3.9417 -1.1758 2.1612 50 1 3.9145 -1.3544 0.3878 51 1 1.6977 -0.1958 2.1395 52 1 1.6570 -1.7434 1.2604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036203952.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:30 Heat of formation + Delta-G solvation = -32.027243 kcal Electronic energy + Delta-G solvation = -31201.233316 eV Core-core repulsion = 27201.912392 eV Total energy + Delta-G solvation = -3999.320924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.15519 -39.34366 -37.94791 -37.78671 -34.67576 -33.76778 -32.72708 -31.50049 -31.26036 -29.19705 -28.75880 -26.90655 -25.48455 -24.20497 -23.61884 -23.33724 -22.11405 -21.63088 -20.61772 -19.42352 -18.37860 -17.32116 -17.12526 -16.85230 -16.09853 -15.83537 -15.02249 -14.85932 -14.79520 -14.61386 -14.46472 -14.29977 -14.02145 -13.82667 -13.66991 -13.40102 -13.22656 -12.99888 -12.76749 -12.52164 -12.30670 -12.14675 -12.09231 -11.77313 -11.51205 -11.41293 -11.27317 -11.16736 -11.05656 -10.93242 -10.76903 -10.73540 -10.69450 -10.48332 -10.20298 -9.84245 -9.75901 -9.53216 -8.94553 -8.90966 -8.57446 -8.33548 -6.94187 -5.76421 -3.04384 1.45639 2.33792 3.25697 3.44243 3.47885 3.49423 3.49656 4.20557 4.45872 4.49702 4.54528 4.60037 4.85644 5.04201 5.13002 5.20054 5.24897 5.31022 5.34428 5.35007 5.41823 5.51417 5.56501 5.64868 5.65377 5.67386 5.72923 5.76107 5.82988 5.83533 5.87420 5.97941 6.01198 6.04050 6.12352 6.17573 6.18730 6.28594 6.44728 6.51936 6.58282 6.62538 6.78747 6.81212 6.96657 7.02176 7.04945 7.55331 7.71085 7.81647 8.09372 8.42314 9.53685 10.10509 10.45563 11.46159 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.002737 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.293802 B =10228.512871 C =10834.885469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.126 4.126 4 C 0.048 3.952 5 N -0.580 5.580 6 C 0.512 3.488 7 O -0.507 6.507 8 C 0.505 3.495 9 O -0.530 6.530 10 N -0.556 5.556 11 C 0.054 3.946 12 C -0.143 4.143 13 C 0.175 3.825 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.107 4.107 25 H 0.066 0.934 26 C -0.137 4.137 27 C 0.113 3.887 28 C 0.105 3.895 29 C -0.127 4.127 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.161 0.839 37 H 0.063 0.937 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.358 -5.317 -7.719 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.165 4.165 4 C -0.072 4.072 5 N -0.314 5.314 6 C 0.296 3.704 7 O -0.385 6.385 8 C 0.288 3.712 9 O -0.411 6.411 10 N -0.286 5.286 11 C -0.066 4.066 12 C -0.184 4.184 13 C 0.065 3.935 14 H 0.068 0.932 15 N -0.360 5.360 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.127 4.127 25 H 0.084 0.916 26 C -0.195 4.195 27 C -0.009 4.009 28 C -0.017 4.017 29 C -0.166 4.166 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.081 0.919 38 H 0.160 0.840 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.113 0.887 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.234 -5.324 -7.512 23.144 hybrid contribution 0.901 -0.332 0.386 1.035 sum -20.333 -5.656 -7.125 22.275 Atomic orbital electron populations 1.21823 0.95070 1.01617 1.01845 1.21186 0.95693 0.96446 0.98182 1.21971 0.95560 0.96269 1.02665 1.23315 0.94004 1.01966 0.87961 1.48001 1.41293 1.14181 1.27889 1.20261 0.80194 0.86937 0.82976 1.90355 1.60139 1.61076 1.26897 1.19909 0.81197 0.87036 0.83049 1.90249 1.61842 1.58756 1.30232 1.48129 1.33058 1.14385 1.33008 1.23143 1.01130 0.95956 0.86394 1.22363 0.99261 1.00134 0.96651 1.20275 0.85750 0.92087 0.95388 0.93158 1.42447 1.00661 1.85544 1.07389 1.19179 0.87495 1.40453 0.89560 0.91305 1.24695 0.97214 1.02968 0.95965 1.69630 1.17930 1.56989 1.13680 0.86304 0.81478 0.78061 0.80540 1.21364 1.21836 1.21397 1.21700 0.99574 0.96051 0.95382 0.91586 1.21667 1.01998 0.94667 1.01134 1.21860 1.00376 0.80547 0.98095 1.21744 0.94137 0.82329 1.03539 1.21965 0.94792 1.01163 0.98646 0.92706 0.92621 0.92751 0.91070 0.90664 0.91663 0.82340 0.91861 0.84029 0.90203 0.90739 0.93557 0.78200 0.93517 0.93747 0.92688 0.90953 0.89979 0.89577 0.88652 0.91093 0.91384 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.10 -0.71 2.68 -90.58 -0.24 -0.95 16 3 C -0.13 -1.07 5.36 -26.61 -0.14 -1.22 16 4 C 0.05 0.51 6.17 -3.71 -0.02 0.49 16 5 N -0.58 -6.97 2.97 -173.27 -0.51 -7.49 16 6 C 0.51 7.61 7.64 -11.58 -0.09 7.52 16 7 O -0.51 -8.32 12.52 5.50 0.07 -8.25 16 8 C 0.50 8.09 7.68 -11.58 -0.09 8.00 16 9 O -0.53 -8.56 12.47 5.50 0.07 -8.50 16 10 N -0.56 -9.41 2.98 -173.53 -0.52 -9.92 16 11 C 0.05 0.97 5.99 -3.93 -0.02 0.95 16 12 C -0.14 -2.58 5.76 -26.83 -0.15 -2.74 16 13 C 0.18 3.37 2.53 -67.89 -0.17 3.19 16 14 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 15 N -0.72 -16.83 3.64 -53.38 -0.19 -17.02 16 16 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 20 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.11 -1.76 2.67 -90.50 -0.24 -2.00 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 C -0.14 -2.17 9.06 37.16 0.34 -1.83 16 27 C 0.11 1.89 5.40 -3.71 -0.02 1.87 16 28 C 0.10 1.01 6.44 -3.71 -0.02 0.99 16 29 C -0.13 -1.00 5.36 -26.61 -0.14 -1.14 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.16 2.02 3.89 -56.65 -0.22 1.80 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.14 2.54 3.77 -56.82 -0.21 2.32 16 39 H 0.08 1.66 7.74 -51.93 -0.40 1.26 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.38 9.57 5.92 -40.82 -0.24 9.33 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 1.33 7.53 -51.93 -0.39 0.94 16 47 H 0.08 1.52 6.64 -51.93 -0.34 1.18 16 48 H 0.09 1.36 7.05 -51.93 -0.37 0.99 16 49 H 0.10 1.02 7.00 -51.92 -0.36 0.66 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 LS Contribution 391.77 15.07 5.90 5.90 Total: -1.00 -29.15 391.77 -9.27 -38.42 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -8.85 Total: 10.76 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.93 Total: 5.71 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.50 Total: -61.14 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.14 Total: -16.75 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.15 -9.27 -38.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036203952.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.390 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds