Wall clock time and date at job start Tue Mar 31 2020 21:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53043 * 109.45871 * 2 1 4 4 C 1.53199 * 109.30983 * 181.37271 * 3 2 1 5 5 N 1.46926 * 108.77534 * 305.36561 * 4 3 2 6 6 C 1.34772 * 120.62998 * 233.58473 * 5 4 3 7 7 O 1.21351 * 120.00013 * 5.06376 * 6 5 4 8 8 C 1.49450 * 120.00138 * 185.06215 * 6 5 4 9 9 O 1.21352 * 119.99862 * 85.41253 * 8 6 5 10 10 N 1.34770 * 120.00149 * 265.69082 * 8 6 5 11 11 C 1.46927 * 120.63321 * 174.66750 * 10 8 6 12 12 C 1.53191 * 108.77801 * 126.36385 * 11 10 8 13 13 C 1.53043 * 109.31253 * 54.63519 * 12 11 10 14 14 H 1.09002 * 109.45662 * 58.65603 * 13 12 11 15 15 N 1.46495 * 109.45935 * 178.61252 * 13 12 11 16 16 C 1.36939 * 120.00185 * 275.00347 * 15 13 12 17 17 H 1.08000 * 119.99988 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99870 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00211 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99739 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47026 * 90.00214 * 20 18 16 22 22 H 1.48502 * 109.46955 * 210.00177 * 20 18 16 23 23 H 1.48500 * 109.47440 * 330.00237 * 20 18 16 24 24 C 1.53037 * 109.53985 * 298.63768 * 13 12 11 25 25 H 1.09008 * 109.49551 * 301.41107 * 24 13 12 26 26 C 1.52995 * 109.49740 * 181.31476 * 24 13 12 27 27 C 1.46925 * 120.63243 * 354.38047 * 10 8 6 28 28 C 1.46923 * 118.73851 * 53.86432 * 5 4 3 29 29 C 1.53038 * 109.45016 * 120.06411 * 2 1 3 30 30 H 1.09004 * 109.47041 * 59.99823 * 1 2 3 31 31 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47092 * 300.00103 * 1 2 3 33 33 H 1.09007 * 109.45769 * 240.02758 * 2 1 3 34 34 H 1.08997 * 109.49830 * 61.42517 * 3 2 1 35 35 H 1.09003 * 109.49859 * 301.31967 * 3 2 1 36 36 H 1.08993 * 109.58371 * 185.57768 * 4 3 2 37 37 H 1.09001 * 109.70037 * 65.22394 * 4 3 2 38 38 H 1.08995 * 109.58820 * 246.15704 * 11 10 8 39 39 H 1.09005 * 109.58468 * 6.43742 * 11 10 8 40 40 H 1.08999 * 109.50001 * 174.58728 * 12 11 10 41 41 H 1.09004 * 109.49761 * 294.68419 * 12 11 10 42 42 H 0.97007 * 120.00104 * 95.00473 * 15 13 12 43 43 H 0.96998 * 120.00109 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.47230 * 60.00233 * 26 24 13 45 45 H 1.09005 * 109.46869 * 179.97438 * 26 24 13 46 46 H 1.08994 * 109.47014 * 299.99664 * 26 24 13 47 47 H 1.08998 * 109.58556 * 353.42887 * 27 10 8 48 48 H 1.09000 * 109.58502 * 113.84520 * 27 10 8 49 49 H 1.09003 * 109.59299 * 65.92303 * 28 5 4 50 50 H 1.09001 * 109.58787 * 186.35650 * 28 5 4 51 51 H 1.09000 * 109.49727 * 298.57067 * 29 2 1 52 52 H 1.08997 * 109.50039 * 58.66542 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5715 1.4392 -0.0346 5 7 4.0677 0.6238 1.0824 6 6 4.9617 1.1275 1.9560 7 8 5.2951 2.2918 1.8796 8 6 5.5426 0.2522 3.0191 9 8 6.5137 -0.4339 2.7765 10 7 4.9844 0.2205 4.2454 11 6 5.4702 -0.7192 5.2650 12 6 5.8189 0.0660 6.5332 13 6 4.6055 0.8919 6.9668 14 1 3.7598 0.2280 7.1460 15 7 4.9246 1.6186 8.1981 16 6 4.7765 1.0050 9.4133 17 1 4.4240 -0.0147 9.4640 18 6 5.0783 1.6938 10.5801 19 7 5.5064 2.9370 10.5185 20 14 4.8755 0.8570 12.2378 21 1 6.1425 0.1758 12.6067 22 1 4.5418 1.8733 13.2678 23 1 3.7811 -0.1435 12.1568 24 6 4.2454 1.8902 5.8642 25 1 5.0994 2.5384 5.6673 26 6 3.0528 2.7375 6.3121 27 6 3.8828 1.1294 4.5902 28 6 3.5754 -0.7531 1.2252 29 6 2.0396 -0.7229 1.2489 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8932 -0.5135 -0.8904 34 1 1.6977 1.9498 0.9023 35 1 1.6575 1.9640 -0.8778 36 1 3.9417 2.4594 0.0650 37 1 3.9166 1.0156 -0.9778 38 1 4.6925 -1.4492 5.4893 39 1 6.3577 -1.2329 4.8952 40 1 6.0891 -0.6286 7.3285 41 1 6.6580 0.7314 6.3300 42 1 5.2408 2.5346 8.1527 43 1 5.7169 3.4184 11.3338 44 1 3.3131 3.2791 7.2215 45 1 2.7970 3.4486 5.5267 46 1 2.1991 2.0886 6.5074 47 1 3.7244 1.8369 3.7763 48 1 2.9728 0.5533 4.7584 49 1 3.9188 -1.3533 0.3825 50 1 3.9483 -1.1797 2.1563 51 1 1.6974 -0.1958 2.1395 52 1 1.6570 -1.7435 1.2602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036203954.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:35 Heat of formation + Delta-G solvation = -67.495736 kcal Electronic energy + Delta-G solvation = -31197.464649 eV Core-core repulsion = 27196.605696 eV Total energy + Delta-G solvation = -4000.858953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.18007 -39.47862 -38.07549 -37.58217 -34.68524 -34.35608 -32.72071 -31.89189 -31.51855 -29.61366 -28.80159 -26.45998 -25.92381 -24.55391 -23.81573 -23.13091 -22.11027 -21.46292 -20.58579 -19.76523 -18.87823 -17.94638 -17.12876 -17.00105 -16.54081 -15.29755 -15.23071 -15.09963 -14.96954 -14.74638 -14.59767 -14.18036 -14.00549 -13.89935 -13.80198 -13.60008 -13.19412 -13.14447 -12.91915 -12.53184 -12.40835 -12.29095 -12.27094 -11.84720 -11.77007 -11.60342 -11.51709 -11.35545 -11.16578 -10.94472 -10.90139 -10.82788 -10.82387 -10.64041 -10.45108 -10.22146 -9.81790 -9.70419 -9.52652 -9.09534 -8.92279 -8.68515 -6.98414 -5.78767 -3.07781 1.99385 2.04510 2.48202 3.17602 3.41635 3.46769 3.48570 3.99379 4.25212 4.33626 4.37079 4.55875 4.62979 4.82663 4.87939 4.92368 5.03584 5.09666 5.19717 5.21040 5.26282 5.34230 5.34997 5.36775 5.45364 5.48458 5.52480 5.54866 5.60896 5.61802 5.68621 5.70307 5.77993 5.81307 5.98157 5.99011 6.04704 6.07654 6.24205 6.32639 6.35786 6.42395 6.59446 6.79098 6.83604 6.84832 7.02456 7.18783 7.61723 7.67056 7.79396 8.39171 9.50685 10.07655 10.42489 11.43658 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.002775 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.413714 B =10087.345947 C =10496.055546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.129 4.129 4 C 0.109 3.891 5 N -0.598 5.598 6 C 0.520 3.480 7 O -0.512 6.512 8 C 0.515 3.485 9 O -0.520 6.520 10 N -0.588 5.588 11 C 0.110 3.890 12 C -0.153 4.153 13 C 0.185 3.815 14 H 0.049 0.951 15 N -0.720 5.720 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.111 4.111 25 H 0.073 0.927 26 C -0.135 4.135 27 C 0.114 3.886 28 C 0.106 3.894 29 C -0.129 4.129 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.043 0.957 46 H 0.051 0.949 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.072 0.928 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 -7.163 -23.377 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.167 4.167 4 C -0.013 4.013 5 N -0.334 5.334 6 C 0.302 3.698 7 O -0.386 6.386 8 C 0.297 3.703 9 O -0.396 6.396 10 N -0.322 5.322 11 C -0.011 4.011 12 C -0.194 4.194 13 C 0.075 3.925 14 H 0.067 0.933 15 N -0.360 5.360 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.131 4.131 25 H 0.091 0.909 26 C -0.193 4.193 27 C -0.009 4.009 28 C -0.017 4.017 29 C -0.168 4.168 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.102 0.898 51 H 0.091 0.909 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.135 -6.991 -23.361 26.407 hybrid contribution 0.139 -0.130 0.989 1.007 sum -9.995 -7.121 -22.372 25.517 Atomic orbital electron populations 1.21820 0.94698 1.01887 1.02026 1.21142 0.95998 0.95842 0.98210 1.21997 0.94568 0.96943 1.03217 1.21708 0.94111 0.97223 0.88240 1.48099 1.42034 1.14865 1.28355 1.20384 0.79023 0.87692 0.82674 1.90811 1.59115 1.15807 1.72825 1.20115 0.84393 0.82222 0.83531 1.90791 1.25498 1.42202 1.81103 1.48251 1.35062 1.37458 1.11390 1.21863 1.00259 0.91119 0.87903 1.22712 1.01487 1.00128 0.95046 1.20186 0.94130 0.91922 0.86304 0.93300 1.42398 1.79247 1.14410 0.99964 1.19204 1.37220 0.96730 0.83835 0.91209 1.24737 1.02133 0.96235 0.97733 1.69658 1.51221 1.09874 1.27194 0.86222 0.77660 0.78197 0.84275 1.21775 1.21835 1.20791 1.21665 0.99613 0.97825 0.94016 0.90860 1.21655 0.96778 0.99127 1.01728 1.21856 0.88556 0.92024 0.98450 1.21911 0.94772 0.81914 1.03071 1.22076 0.94116 1.01642 0.98927 0.92580 0.92543 0.92461 0.90900 0.91065 0.90382 0.88583 0.91042 0.91038 0.89358 0.90278 0.92022 0.78164 0.93492 0.90485 0.93840 0.92973 0.90467 0.90722 0.90581 0.89825 0.90925 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.19 37.16 0.34 -0.38 16 2 C -0.09 -0.51 2.68 -90.58 -0.24 -0.75 16 3 C -0.13 -0.80 5.36 -26.61 -0.14 -0.95 16 4 C 0.11 0.90 6.44 -3.71 -0.02 0.88 16 5 N -0.60 -6.21 2.97 -173.01 -0.51 -6.73 16 6 C 0.52 7.43 5.61 -11.59 -0.07 7.37 16 7 O -0.51 -8.79 16.31 5.50 0.09 -8.70 16 8 C 0.52 7.96 5.49 -11.59 -0.06 7.90 16 9 O -0.52 -9.37 16.51 5.49 0.09 -9.28 16 10 N -0.59 -8.34 2.98 -173.54 -0.52 -8.86 16 11 C 0.11 1.58 6.44 -3.71 -0.02 1.55 16 12 C -0.15 -2.65 5.66 -26.61 -0.15 -2.80 16 13 C 0.19 3.44 2.19 -67.89 -0.15 3.29 16 14 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 15 N -0.72 -17.15 4.41 -53.39 -0.24 -17.38 16 16 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 20 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.11 -1.78 2.44 -90.73 -0.22 -2.01 16 25 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 26 C -0.13 -2.09 9.03 37.16 0.34 -1.76 16 27 C 0.11 1.50 5.58 -3.93 -0.02 1.48 16 28 C 0.11 0.85 6.35 -3.48 -0.02 0.83 16 29 C -0.13 -0.79 5.38 -26.38 -0.14 -0.93 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.94 7.00 -51.93 -0.36 0.57 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.38 9.95 7.51 -40.82 -0.31 9.64 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.08 1.43 7.36 -51.93 -0.38 1.05 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 1.01 6.23 -51.93 -0.32 0.68 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.76 6.37 -51.93 -0.33 0.43 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -32.36 404.47 -9.35 -41.71 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -9.22 Total: 6.32 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.84 Total: 6.80 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.54 Total: -59.89 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.18 Total: -17.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.36 -9.35 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036203954.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.786 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds