Wall clock time and date at job start Tue Mar 31 2020 21:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21281 * 119.99875 * 2 1 4 4 N 1.34776 * 119.99974 * 180.02562 * 2 1 3 5 5 C 1.46919 * 120.63214 * 4.74510 * 4 2 1 6 6 C 1.53190 * 108.77292 * 233.58485 * 5 4 2 7 7 C 1.53042 * 109.31450 * 305.36208 * 6 5 4 8 8 C 1.50696 * 109.46238 * 181.38756 * 7 6 5 9 9 O 1.21284 * 119.99926 * 335.21069 * 8 7 6 10 10 N 1.34781 * 120.00434 * 155.20561 * 8 7 6 11 11 C 1.46922 * 120.62606 * 355.19375 * 10 8 7 12 12 C 1.53191 * 108.77702 * 126.40915 * 11 10 8 13 13 C 1.53045 * 109.31198 * 54.63330 * 12 11 10 14 14 H 1.08997 * 109.45932 * 178.62385 * 13 12 11 15 15 N 1.46505 * 109.45567 * 58.65215 * 13 12 11 16 16 C 1.36935 * 119.99637 * 85.00496 * 15 13 12 17 17 H 1.08001 * 120.00491 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00061 * 179.72112 * 16 15 13 19 19 N 1.31623 * 119.99933 * 0.27422 * 18 16 15 20 20 Si 1.86800 * 120.00260 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47279 * 59.99889 * 20 18 16 22 22 H 1.48499 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47258 * 299.99801 * 20 18 16 24 24 C 1.53045 * 109.53810 * 298.63859 * 13 12 11 25 25 H 1.08999 * 109.49004 * 301.41261 * 24 13 12 26 26 C 1.52999 * 109.49467 * 181.31493 * 24 13 12 27 27 C 1.46919 * 120.63393 * 175.21200 * 10 8 7 28 28 C 1.53033 * 109.52401 * 61.37100 * 7 6 5 29 29 C 1.46929 * 120.63010 * 184.71674 * 4 2 1 30 30 H 1.08997 * 109.47650 * 264.58432 * 1 2 3 31 31 H 1.09001 * 109.47436 * 24.59223 * 1 2 3 32 32 H 1.09002 * 109.46945 * 144.58895 * 1 2 3 33 33 H 1.09000 * 109.59012 * 113.79544 * 5 4 2 34 34 H 1.09001 * 109.70394 * 353.44055 * 5 4 2 35 35 H 1.09006 * 109.49761 * 185.41588 * 6 5 4 36 36 H 1.08996 * 109.50210 * 65.31704 * 6 5 4 37 37 H 1.09002 * 109.46070 * 301.36041 * 7 6 5 38 38 H 1.09002 * 109.58905 * 6.62043 * 11 10 8 39 39 H 1.09003 * 109.58914 * 246.19899 * 11 10 8 40 40 H 1.08996 * 109.49896 * 294.68394 * 12 11 10 41 41 H 1.09001 * 109.49939 * 174.58514 * 12 11 10 42 42 H 0.97000 * 120.00178 * 264.99882 * 15 13 12 43 43 H 0.97000 * 119.99923 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.47303 * 59.99799 * 26 24 13 45 45 H 1.09001 * 109.46842 * 179.97438 * 26 24 13 46 46 H 1.08991 * 109.47284 * 299.99531 * 26 24 13 47 47 H 1.09004 * 109.58934 * 353.37429 * 27 10 8 48 48 H 1.09003 * 109.58797 * 113.65613 * 27 10 8 49 49 H 1.09003 * 109.49631 * 58.58682 * 28 7 6 50 50 H 1.09001 * 109.49962 * 178.67388 * 28 7 6 51 51 H 1.09000 * 109.58819 * 246.20391 * 29 4 2 52 52 H 1.09006 * 109.58580 * 6.62671 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4641 -2.4454 -0.1057 6 6 1.8890 -3.3461 1.0583 7 6 3.4136 -3.4792 1.0650 8 6 3.8330 -4.3921 2.1882 9 8 3.1171 -4.5294 3.1575 10 7 5.0037 -5.0561 2.1156 11 6 5.8318 -4.9830 0.9042 12 6 7.2460 -4.5465 1.2993 13 6 7.7862 -5.4929 2.3738 14 1 8.8018 -5.1992 2.6391 15 7 7.7939 -6.8639 1.8574 16 6 8.8553 -7.3105 1.1164 17 1 9.6867 -6.6520 0.9124 18 6 8.8653 -8.6113 0.6320 19 7 7.8520 -9.4138 0.8802 20 14 10.3168 -9.2229 -0.3722 21 1 11.5551 -9.1341 0.4426 22 1 10.0846 -10.6351 -0.7685 23 1 10.4643 -8.3857 -1.5897 24 6 6.8939 -5.4207 3.6150 25 1 6.8680 -4.3958 3.9852 26 6 7.4534 -6.3425 4.7005 27 6 5.4757 -5.8671 3.2461 28 6 4.0465 -2.1003 1.2652 29 6 3.6463 -1.1855 0.1034 30 1 -0.3634 -0.0970 1.0230 31 1 -0.3634 0.9344 -0.4277 32 1 -0.3633 -0.8376 -0.5955 33 1 1.7135 -2.9276 -1.0508 34 1 0.3895 -2.2691 -0.0579 35 1 1.4384 -4.3315 0.9391 36 1 1.5582 -2.9056 1.9988 37 1 3.7458 -3.8966 0.1144 38 1 5.4048 -4.2564 0.2129 39 1 5.8713 -5.9631 0.4288 40 1 7.2168 -3.5299 1.6913 41 1 7.8952 -4.5809 0.4243 42 1 7.0471 -7.4553 2.0403 43 1 7.8591 -10.3229 0.5420 44 1 8.4635 -6.0263 4.9605 45 1 6.8178 -6.2904 5.5844 46 1 7.4775 -7.3672 4.3299 47 1 4.8138 -5.7238 4.1002 48 1 5.4837 -6.9196 2.9626 49 1 3.6952 -1.6716 2.2038 50 1 5.1317 -2.1987 1.2934 51 1 4.0738 -1.5650 -0.8247 52 1 4.0121 -0.1759 0.2906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036285434.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:26 Heat of formation + Delta-G solvation = -64.320444 kcal Electronic energy + Delta-G solvation = -31078.180585 eV Core-core repulsion = 27077.459323 eV Total energy + Delta-G solvation = -4000.721262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.79584 -39.85922 -38.07184 -36.99632 -34.36565 -33.49055 -32.65930 -31.75275 -31.42007 -29.75176 -29.20833 -27.02976 -25.68451 -24.61588 -23.57598 -23.43888 -21.80209 -21.58699 -19.78279 -19.07420 -18.17313 -17.42844 -17.36230 -16.91637 -16.16169 -15.72762 -15.66467 -15.17392 -14.66564 -14.49520 -14.33801 -14.11690 -13.95938 -13.72068 -13.61119 -13.52417 -13.32373 -13.06625 -12.64146 -12.56687 -12.41618 -12.28759 -12.26584 -12.00613 -11.63217 -11.48597 -11.43937 -11.23538 -10.95095 -10.93254 -10.87025 -10.81109 -10.52780 -10.44561 -10.25470 -10.05609 -9.88021 -9.59268 -9.51380 -8.97044 -8.92801 -8.25077 -7.01981 -5.82978 -3.11564 2.34847 2.69877 2.76953 3.22433 3.38779 3.44302 3.44915 4.23752 4.35452 4.47614 4.53787 4.63321 4.75173 4.85104 4.86517 4.98862 5.04302 5.09873 5.19012 5.25397 5.29901 5.32202 5.41683 5.48365 5.49990 5.51141 5.54352 5.57180 5.68864 5.73025 5.78181 5.86418 5.90715 6.01939 6.04277 6.07570 6.20469 6.22745 6.27941 6.37698 6.47028 6.60260 6.65121 6.72836 6.89574 6.97505 7.10119 7.64234 7.69683 7.88691 8.35572 8.36162 9.47173 10.03721 10.38787 11.39301 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002732 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.204587 B =10245.499144 C =10788.657350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.613 5.613 5 C 0.105 3.895 6 C -0.117 4.117 7 C -0.108 4.108 8 C 0.517 3.483 9 O -0.553 6.553 10 N -0.599 5.599 11 C 0.111 3.889 12 C -0.150 4.150 13 C 0.179 3.821 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.011 4.011 19 N -0.933 5.933 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.108 4.108 25 H 0.064 0.936 26 C -0.137 4.137 27 C 0.119 3.881 28 C -0.121 4.121 29 C 0.113 3.887 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 14.177 -1.083 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.348 5.348 5 C -0.018 4.018 6 C -0.155 4.155 7 C -0.129 4.129 8 C 0.305 3.695 9 O -0.432 6.432 10 N -0.330 5.330 11 C -0.011 4.011 12 C -0.191 4.191 13 C 0.068 3.932 14 H 0.068 0.932 15 N -0.361 5.361 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.207 4.207 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.128 4.128 25 H 0.083 0.917 26 C -0.195 4.195 27 C -0.003 4.003 28 C -0.160 4.160 29 C -0.009 4.009 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.090 0.910 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.912 14.598 -0.669 19.500 hybrid contribution 0.741 -0.848 -0.632 1.291 sum -12.171 13.750 -1.301 18.409 Atomic orbital electron populations 1.21976 0.91887 1.04937 1.04775 1.20810 0.90659 0.82996 0.75305 1.90712 1.70774 1.31102 1.50216 1.48195 1.07414 1.06229 1.72917 1.21889 0.97365 0.83597 0.98968 1.21767 0.93936 1.00513 0.99294 1.21329 0.97123 0.95662 0.98827 1.20443 0.80893 0.80241 0.87924 1.90652 1.52708 1.65454 1.34407 1.48138 1.20225 1.47654 1.17011 1.21797 0.90890 1.02838 0.85573 1.22531 0.95866 0.98681 1.02005 1.20210 0.96105 0.86859 0.90005 0.93170 1.42468 1.23107 1.08046 1.62445 1.19168 0.97622 0.95473 1.24684 0.91324 1.24703 0.97907 0.96612 1.01504 1.69638 1.30939 1.07059 1.50448 0.86314 0.82259 0.77755 0.80097 1.21365 1.21808 1.21364 1.21696 0.94824 0.99225 0.97018 0.91733 1.21665 0.99908 1.01181 0.96771 1.21630 0.94785 0.95019 0.88877 1.21856 1.01388 0.93246 0.99500 1.21604 0.79536 1.01601 0.98167 0.88764 0.89015 0.89758 0.90853 0.88971 0.90062 0.90208 0.88553 0.91056 0.89698 0.93326 0.90739 0.78098 0.93461 0.92817 0.93806 0.91029 0.89989 0.90724 0.90835 0.89771 0.91042 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 9.41 36.00 0.34 -0.74 16 2 C 0.51 5.29 7.80 -10.99 -0.09 5.21 16 3 O -0.55 -8.00 16.53 5.56 0.09 -7.91 16 4 N -0.61 -5.56 2.97 -172.77 -0.51 -6.08 16 5 C 0.10 0.71 6.26 -3.72 -0.02 0.69 16 6 C -0.12 -1.07 4.86 -26.61 -0.13 -1.20 16 7 C -0.11 -1.15 1.66 -91.73 -0.15 -1.30 16 8 C 0.52 7.56 6.80 -10.99 -0.07 7.49 16 9 O -0.55 -9.82 15.56 5.55 0.09 -9.73 16 10 N -0.60 -9.04 2.97 -172.77 -0.51 -9.55 16 11 C 0.11 1.62 6.00 -3.71 -0.02 1.60 16 12 C -0.15 -2.30 5.78 -26.61 -0.15 -2.45 16 13 C 0.18 3.19 2.53 -67.88 -0.17 3.02 16 14 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 15 N -0.72 -15.98 3.64 -53.38 -0.19 -16.17 16 16 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 17 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 20 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.14 -2.17 9.05 37.16 0.34 -1.83 16 27 C 0.12 1.95 5.40 -3.72 -0.02 1.93 16 28 C -0.12 -1.21 5.22 -26.62 -0.14 -1.35 16 29 C 0.11 1.06 6.42 -3.71 -0.02 1.04 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.33 6.29 -51.93 -0.33 0.00 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.43 5.51 -51.93 -0.29 0.14 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 37 H 0.10 0.93 6.28 -51.93 -0.33 0.60 16 38 H 0.07 0.83 5.23 -51.93 -0.27 0.56 16 39 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.38 9.21 5.93 -40.82 -0.24 8.97 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 47 H 0.08 1.37 7.04 -51.93 -0.37 1.00 16 48 H 0.07 1.37 6.65 -51.93 -0.35 1.02 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.10 1.02 7.03 -51.93 -0.37 0.66 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -32.05 395.79 -8.95 -41.00 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.76 Total: 8.41 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.81 Total: 3.55 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.50 Total: -57.67 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.18 Total: -17.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.05 -8.95 -41.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036285434.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.325 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds