Wall clock time and date at job start Tue Mar 31 2020 21:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21272 * 120.00089 * 2 1 4 4 N 1.34778 * 120.00012 * 179.97438 * 2 1 3 5 5 C 1.46930 * 120.62907 * 5.60534 * 4 2 1 6 6 C 1.53193 * 108.77385 * 126.36801 * 5 4 2 7 7 C 1.53041 * 109.31542 * 54.63475 * 6 5 4 8 8 C 1.50696 * 109.45817 * 178.62645 * 7 6 5 9 9 O 1.21283 * 119.99748 * 86.80221 * 8 7 6 10 10 N 1.34772 * 120.00599 * 266.79744 * 8 7 6 11 11 C 1.46928 * 120.62566 * 355.39116 * 10 8 7 12 12 C 1.53625 * 108.54575 * 126.36576 * 11 10 8 13 13 C 1.53044 * 109.24064 * 54.85308 * 12 11 10 14 14 H 1.09007 * 109.44306 * 58.52770 * 13 12 11 15 15 N 1.46496 * 109.45855 * 178.48925 * 13 12 11 16 16 C 1.36930 * 120.00601 * 275.06959 * 15 13 12 17 17 H 1.08004 * 119.99590 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00698 * 180.02562 * 16 15 13 19 19 N 1.31622 * 119.99619 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00422 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47123 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46931 * 120.00047 * 20 18 16 23 23 H 1.48498 * 109.47327 * 240.00024 * 20 18 16 24 24 C 1.53035 * 109.53643 * 298.51319 * 13 12 11 25 25 H 1.08997 * 109.50245 * 301.41324 * 24 13 12 26 26 C 1.53009 * 109.49407 * 181.31544 * 24 13 12 27 27 C 1.46918 * 120.63738 * 175.66543 * 10 8 7 28 28 C 1.53042 * 109.53653 * 298.63252 * 7 6 5 29 29 C 1.46921 * 120.63141 * 185.57760 * 4 2 1 30 30 H 1.09003 * 109.47325 * 185.98326 * 1 2 3 31 31 H 1.08991 * 109.47341 * 305.98884 * 1 2 3 32 32 H 1.09007 * 109.46784 * 65.98992 * 1 2 3 33 33 H 1.09004 * 109.58765 * 6.58052 * 5 4 2 34 34 H 1.08999 * 109.58951 * 246.15058 * 5 4 2 35 35 H 1.09002 * 109.49893 * 294.68015 * 6 5 4 36 36 H 1.09001 * 109.49596 * 174.58876 * 6 5 4 37 37 H 1.08997 * 109.46004 * 58.65749 * 7 6 5 38 38 H 1.08998 * 109.58616 * 246.20087 * 11 10 8 39 39 H 1.09002 * 109.59004 * 6.62467 * 11 10 8 40 40 H 1.08999 * 109.63452 * 294.86737 * 12 11 10 41 41 H 1.08999 * 109.46100 * 174.73908 * 12 11 10 42 42 H 0.97000 * 119.99823 * 95.07077 * 15 13 12 43 43 H 0.97001 * 120.00208 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.46827 * 300.16382 * 26 24 13 45 45 H 1.08997 * 109.46781 * 60.16132 * 26 24 13 46 46 H 1.09001 * 109.46696 * 180.16313 * 26 24 13 47 47 H 1.09005 * 109.58554 * 353.37571 * 27 10 8 48 48 H 1.09004 * 109.58986 * 113.80073 * 27 10 8 49 49 H 1.08994 * 109.49459 * 181.31452 * 28 7 6 50 50 H 1.08994 * 109.50078 * 301.41705 * 28 7 6 51 51 H 1.09002 * 109.58908 * 353.42580 * 29 4 2 52 52 H 1.09003 * 109.58355 * 113.84982 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4655 -2.4447 -0.1224 6 6 2.0719 -3.2397 -1.2830 7 6 3.5801 -3.3823 -1.0655 8 6 4.1748 -4.1928 -2.1881 9 8 4.5232 -3.6453 -3.2127 10 7 4.3195 -5.5259 -2.0537 11 6 3.9966 -6.1895 -0.7832 12 6 3.0050 -7.3285 -1.0652 13 6 3.5945 -8.2589 -2.1278 14 1 4.5476 -8.6537 -1.7760 15 7 2.6684 -9.3669 -2.3743 16 6 2.6990 -10.4763 -1.5722 17 1 3.4057 -10.5343 -0.7576 18 6 1.8219 -11.5264 -1.8061 19 7 0.9603 -11.4555 -2.7986 20 14 1.8643 -13.0401 -0.7123 21 1 2.9150 -12.8730 0.3236 22 1 0.5441 -13.2125 -0.0544 23 1 2.1669 -14.2379 -1.5363 24 6 3.8135 -7.4790 -3.4262 25 1 2.8649 -7.0628 -3.7652 26 6 4.3722 -8.4177 -4.4976 27 6 4.8090 -6.3425 -3.1727 28 6 4.2268 -1.9955 -1.0400 29 6 3.6448 -1.1863 0.1234 30 1 -0.3634 -1.0221 0.1071 31 1 -0.3633 0.6038 0.8314 32 1 -0.3633 0.4182 -0.9388 33 1 0.4106 -2.2551 -0.3211 34 1 1.5691 -3.0120 0.8025 35 1 1.8876 -2.7138 -2.2198 36 1 1.6152 -4.2285 -1.3245 37 1 3.7640 -3.8863 -0.1168 38 1 4.9066 -6.5947 -0.3410 39 1 3.5446 -5.4705 -0.0999 40 1 2.0639 -6.9138 -1.4264 41 1 2.8269 -7.8902 -0.1482 42 1 2.0334 -9.3147 -3.1057 43 1 0.3476 -12.1895 -2.9623 44 1 5.3201 -8.8344 -4.1571 45 1 3.6636 -9.2261 -4.6776 46 1 4.5308 -7.8611 -5.4213 47 1 4.8933 -5.7244 -4.0666 48 1 5.7840 -6.7600 -2.9214 49 1 5.3039 -2.0988 -0.9084 50 1 4.0222 -1.4812 -1.9789 51 1 4.0280 -0.1665 0.0870 52 1 3.9261 -1.6511 1.0684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036285435.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:31 Heat of formation + Delta-G solvation = -62.428781 kcal Electronic energy + Delta-G solvation = -30659.499718 eV Core-core repulsion = 26658.860485 eV Total energy + Delta-G solvation = -4000.639233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.87908 -39.92577 -38.03616 -37.06096 -34.68729 -33.58609 -32.74965 -31.82742 -31.49732 -29.74528 -29.35383 -27.16983 -25.70527 -24.75765 -23.62083 -22.89694 -21.89771 -21.55066 -19.97073 -19.39546 -18.71969 -17.52410 -17.20269 -17.09468 -16.21009 -15.84532 -15.73328 -15.17027 -15.01113 -14.55694 -14.23983 -14.16722 -13.89390 -13.82198 -13.70291 -13.58150 -13.37210 -13.13024 -12.84783 -12.51780 -12.39972 -12.33945 -12.21545 -12.03830 -11.84934 -11.63536 -11.57614 -11.25012 -11.01567 -10.99373 -10.89641 -10.86505 -10.65901 -10.45253 -10.21594 -10.08189 -9.81933 -9.69048 -9.63879 -8.99518 -8.95455 -8.51859 -7.02667 -5.83660 -3.12488 2.31997 2.59359 2.66841 3.02915 3.37334 3.43249 3.45544 4.17222 4.30833 4.35105 4.48465 4.52300 4.68293 4.76913 4.80983 4.92757 4.99315 5.05407 5.13735 5.15990 5.19933 5.22209 5.29863 5.35870 5.41165 5.47092 5.50142 5.51197 5.55921 5.63146 5.66941 5.75004 5.78843 5.92053 6.00111 6.03716 6.09497 6.17236 6.23433 6.33316 6.37992 6.47748 6.57287 6.74906 6.86860 6.98656 7.05930 7.47317 7.63185 7.85761 8.19555 8.34524 9.46155 10.03347 10.38046 11.38803 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.002592 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.061818 B =10801.789138 C =11818.120955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.514 3.486 3 O -0.550 6.550 4 N -0.614 5.614 5 C 0.105 3.895 6 C -0.124 4.124 7 C -0.109 4.109 8 C 0.519 3.481 9 O -0.547 6.547 10 N -0.605 5.605 11 C 0.103 3.897 12 C -0.151 4.151 13 C 0.184 3.816 14 H 0.047 0.953 15 N -0.720 5.720 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.109 4.109 25 H 0.068 0.932 26 C -0.136 4.136 27 C 0.120 3.880 28 C -0.116 4.116 29 C 0.111 3.889 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.050 0.950 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.095 0.905 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 18.137 6.261 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.303 3.697 3 O -0.428 6.428 4 N -0.348 5.348 5 C -0.018 4.018 6 C -0.163 4.163 7 C -0.130 4.130 8 C 0.307 3.693 9 O -0.425 6.425 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.192 4.192 13 C 0.073 3.927 14 H 0.065 0.935 15 N -0.361 5.361 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.129 4.129 25 H 0.087 0.913 26 C -0.194 4.194 27 C -0.003 4.003 28 C -0.155 4.155 29 C -0.011 4.011 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.083 0.917 49 H 0.096 0.904 50 H 0.098 0.902 51 H 0.114 0.886 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.975 18.821 5.840 19.929 hybrid contribution -0.335 -1.219 0.428 1.335 sum 2.640 17.601 6.269 18.870 Atomic orbital electron populations 1.22033 0.91818 1.04709 1.05373 1.20821 0.90677 0.82998 0.75163 1.90706 1.70690 1.31123 1.50299 1.48215 1.07494 1.06299 1.72791 1.21909 0.97045 0.83989 0.98834 1.21858 0.93263 1.01656 0.99487 1.21369 0.96533 0.96535 0.98560 1.20493 0.78174 0.82028 0.88641 1.90673 1.50583 1.70552 1.30709 1.48197 1.64929 1.06386 1.14191 1.22056 0.99607 0.95745 0.84621 1.22763 0.98076 0.96057 1.02278 1.20187 0.93619 0.87796 0.91052 0.93474 1.42412 1.41046 1.15515 1.37099 1.19245 1.14890 0.94181 1.08574 0.91208 1.24730 0.98794 0.98648 0.98688 1.69666 1.23938 1.32760 1.31606 0.86163 0.77163 0.83376 0.79739 1.20595 1.21932 1.21904 1.21736 0.98540 0.95078 0.97545 0.91331 1.21662 1.01610 0.99478 0.96673 1.21705 0.96767 0.92165 0.89673 1.21777 1.00083 0.93773 0.99843 1.21628 0.79307 1.02287 0.97888 0.89776 0.88705 0.88686 0.88533 0.90621 0.90497 0.89527 0.88588 0.91444 0.90225 0.92163 0.90606 0.78230 0.93548 0.93052 0.90742 0.93840 0.89501 0.91686 0.90384 0.90183 0.88639 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 10.00 36.01 0.36 -0.73 16 2 C 0.51 5.16 7.79 -10.99 -0.09 5.08 16 3 O -0.55 -7.84 16.52 5.56 0.09 -7.75 16 4 N -0.61 -5.28 2.97 -172.76 -0.51 -5.79 16 5 C 0.10 0.67 6.25 -3.71 -0.02 0.64 16 6 C -0.12 -1.04 5.34 -26.61 -0.14 -1.18 16 7 C -0.11 -1.03 1.87 -91.73 -0.17 -1.20 16 8 C 0.52 6.80 6.71 -10.99 -0.07 6.72 16 9 O -0.55 -9.14 15.70 5.56 0.09 -9.05 16 10 N -0.60 -7.75 2.97 -172.51 -0.51 -8.26 16 11 C 0.10 1.17 6.31 -3.48 -0.02 1.14 16 12 C -0.15 -2.24 5.67 -26.38 -0.15 -2.39 16 13 C 0.18 3.25 2.19 -67.89 -0.15 3.10 16 14 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 15 N -0.72 -16.48 4.41 -53.39 -0.24 -16.71 16 16 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 17 H 0.07 1.76 7.83 -52.48 -0.41 1.34 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 20 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C -0.11 -1.70 2.46 -90.50 -0.22 -1.92 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 C -0.14 -2.14 9.02 37.16 0.34 -1.81 16 27 C 0.12 1.66 5.70 -3.72 -0.02 1.64 16 28 C -0.12 -1.11 4.97 -26.61 -0.13 -1.24 16 29 C 0.11 0.96 6.44 -3.71 -0.02 0.94 16 30 H 0.08 0.33 5.32 -51.93 -0.28 0.06 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.10 0.44 5.26 -51.93 -0.27 0.17 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.74 5.81 -51.93 -0.30 0.44 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.70 5.32 -51.93 -0.28 0.42 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.38 9.55 7.50 -40.82 -0.31 9.24 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.09 1.28 7.03 -51.93 -0.37 0.92 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 51 H 0.10 0.96 7.00 -51.93 -0.36 0.60 16 52 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -33.08 399.38 -8.97 -42.05 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.84 Total: 7.20 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.77 Total: 2.08 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.54 Total: -56.96 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.18 Total: -16.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.08 -8.97 -42.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036285435.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.381 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds