Wall clock time and date at job start Tue Mar 31 2020 21:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21280 * 120.00337 * 2 1 4 4 N 1.34780 * 120.00024 * 179.97438 * 2 1 3 5 5 C 1.46922 * 120.62784 * 354.40819 * 4 2 1 6 6 C 1.53195 * 108.77537 * 233.58452 * 5 4 2 7 7 C 1.53038 * 109.34131 * 305.35413 * 6 5 4 8 8 C 1.50704 * 109.46162 * 181.39887 * 7 6 5 9 9 O 1.21274 * 120.00267 * 273.25159 * 8 7 6 10 10 N 1.34780 * 119.99689 * 93.25316 * 8 7 6 11 11 C 1.46929 * 120.63305 * 4.04621 * 10 8 7 12 12 C 1.52759 * 109.00968 * 233.58466 * 11 10 8 13 13 C 1.53034 * 109.38503 * 305.58893 * 12 11 10 14 14 H 1.08995 * 109.46249 * 181.25988 * 13 12 11 15 15 N 1.46496 * 109.45104 * 301.22952 * 13 12 11 16 16 C 1.36944 * 120.00051 * 275.06226 * 15 13 12 17 17 H 1.08000 * 119.99378 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00449 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99728 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00257 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46972 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47446 * 119.99615 * 20 18 16 23 23 H 1.48501 * 109.46859 * 239.99900 * 20 18 16 24 24 C 1.53046 * 109.53736 * 61.24186 * 13 12 11 25 25 H 1.08996 * 109.49842 * 58.58869 * 24 13 12 26 26 C 1.52998 * 109.52285 * 178.66848 * 24 13 12 27 27 C 1.46930 * 120.62695 * 184.33026 * 10 8 7 28 28 C 1.53099 * 109.50535 * 61.34432 * 7 6 5 29 29 C 1.46924 * 120.63163 * 174.38795 * 4 2 1 30 30 H 1.09000 * 109.47456 * 174.03377 * 1 2 3 31 31 H 1.08999 * 109.47428 * 294.03731 * 1 2 3 32 32 H 1.09005 * 109.46993 * 54.03003 * 1 2 3 33 33 H 1.09004 * 109.58691 * 113.80179 * 5 4 2 34 34 H 1.08998 * 109.70451 * 353.44347 * 5 4 2 35 35 H 1.09008 * 109.49401 * 65.32016 * 6 5 4 36 36 H 1.08999 * 109.50138 * 185.38216 * 6 5 4 37 37 H 1.09000 * 109.46111 * 301.35655 * 7 6 5 38 38 H 1.09000 * 109.58600 * 353.42456 * 11 10 8 39 39 H 1.09000 * 109.58539 * 113.84296 * 11 10 8 40 40 H 1.08999 * 109.56403 * 185.55380 * 12 11 10 41 41 H 1.09002 * 109.38475 * 65.51578 * 12 11 10 42 42 H 0.97002 * 120.00347 * 95.05933 * 15 13 12 43 43 H 0.97005 * 120.00030 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.46881 * 179.85266 * 26 24 13 45 45 H 1.08999 * 109.47616 * 299.85060 * 26 24 13 46 46 H 1.09000 * 109.47567 * 59.85507 * 26 24 13 47 47 H 1.09005 * 109.58317 * 246.15282 * 27 10 8 48 48 H 1.08997 * 109.58940 * 6.58119 * 27 10 8 49 49 H 1.08998 * 109.49403 * 178.70319 * 28 7 6 50 50 H 1.09008 * 109.51732 * 58.63542 * 28 7 6 51 51 H 1.09002 * 109.58728 * 246.19968 * 29 4 2 52 52 H 1.09009 * 109.58651 * 6.48317 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4654 -2.4445 0.1243 6 6 2.0724 -3.2392 1.2849 7 6 3.5804 -3.3826 1.0671 8 6 4.1749 -4.1934 2.1897 9 8 4.5230 -3.6463 3.2146 10 7 4.3199 -5.5265 2.0547 11 6 3.9856 -6.1915 0.7879 12 6 3.0043 -7.3285 1.0665 13 6 3.5935 -8.2592 2.1288 14 1 2.9042 -9.0832 2.3124 15 7 4.8742 -8.7903 1.6558 16 6 4.9011 -9.9006 0.8546 17 1 3.9780 -10.3848 0.5718 18 6 6.1146 -10.4042 0.4068 19 7 7.2394 -9.8144 0.7518 20 14 6.1511 -11.9183 -0.6868 21 1 4.7633 -12.3884 -0.9277 22 1 6.7907 -11.5775 -1.9829 23 1 6.9283 -12.9928 -0.0185 24 6 3.8133 -7.4795 3.4273 25 1 2.8649 -7.0630 3.7665 26 6 4.3714 -8.4180 4.4990 27 6 4.8093 -6.3434 3.1737 28 6 4.2272 -1.9952 1.0403 29 6 3.6447 -1.1865 -0.1231 30 1 -0.3634 -1.0221 -0.1068 31 1 -0.3634 0.4186 0.9385 32 1 -0.3633 0.6036 -0.8318 33 1 1.5685 -3.0122 -0.8005 34 1 0.4101 -2.2570 0.3222 35 1 1.8885 -2.7128 2.2216 36 1 1.6153 -4.2278 1.3274 37 1 3.7639 -3.8870 0.1184 38 1 3.5272 -5.4732 0.1081 39 1 4.8918 -6.5967 0.3377 40 1 2.8262 -7.8899 0.1493 41 1 2.0632 -6.9138 1.4278 42 1 5.7033 -8.3556 1.9101 43 1 8.0875 -10.1661 0.4386 44 1 4.5301 -7.8612 5.4226 45 1 3.6626 -9.2261 4.6792 46 1 5.3193 -8.8351 4.1589 47 1 5.7840 -6.7613 2.9220 48 1 4.8940 -5.7254 4.0676 49 1 5.3042 -2.0985 0.9082 50 1 4.0236 -1.4803 1.9793 51 1 3.9256 -1.6515 -1.0681 52 1 4.0277 -0.1665 -0.0897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036285436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:35 Heat of formation + Delta-G solvation = -60.087021 kcal Electronic energy + Delta-G solvation = -31047.334195 eV Core-core repulsion = 27046.796508 eV Total energy + Delta-G solvation = -4000.537687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.79299 -39.86940 -38.08264 -36.99762 -34.34498 -33.47796 -32.73562 -31.77729 -31.45024 -29.71107 -29.23022 -27.07716 -25.67775 -24.60753 -23.57710 -23.49896 -21.81773 -21.59084 -19.77302 -19.05294 -18.19247 -17.44342 -17.40181 -16.94055 -16.16881 -15.75155 -15.63229 -15.17271 -14.65706 -14.52952 -14.32702 -14.11102 -14.02541 -13.73307 -13.65892 -13.51482 -13.34643 -13.05455 -12.74648 -12.58685 -12.40164 -12.26760 -12.23064 -11.95207 -11.62641 -11.53423 -11.44847 -11.24799 -10.97601 -10.92143 -10.87584 -10.78970 -10.53983 -10.42994 -10.20221 -10.04341 -9.88734 -9.61007 -9.50023 -8.98834 -8.92330 -8.25730 -7.02991 -5.84174 -3.12893 2.34976 2.70060 2.76546 3.21785 3.37213 3.43395 3.45663 4.22064 4.35780 4.44481 4.52642 4.56686 4.74682 4.82361 4.90052 4.99195 5.05651 5.08777 5.20087 5.24556 5.26714 5.30941 5.42264 5.44465 5.49160 5.52989 5.54664 5.59641 5.66575 5.73125 5.77193 5.84026 5.90140 6.02495 6.04397 6.10750 6.20905 6.22568 6.26241 6.36261 6.45476 6.59052 6.63244 6.71283 6.88258 6.96363 7.10171 7.63889 7.69443 7.89005 8.34238 8.36964 9.45990 10.02586 10.37390 11.38176 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.002720 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.061623 B =10292.612022 C =10831.426683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.613 5.613 5 C 0.105 3.895 6 C -0.122 4.122 7 C -0.109 4.109 8 C 0.517 3.483 9 O -0.552 6.552 10 N -0.599 5.599 11 C 0.111 3.889 12 C -0.149 4.149 13 C 0.179 3.821 14 H 0.050 0.950 15 N -0.719 5.719 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.107 4.107 25 H 0.064 0.936 26 C -0.138 4.138 27 C 0.119 3.881 28 C -0.116 4.116 29 C 0.111 3.889 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.043 0.957 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.070 0.930 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 13.640 -0.915 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.347 5.347 5 C -0.018 4.018 6 C -0.160 4.160 7 C -0.131 4.131 8 C 0.305 3.695 9 O -0.430 6.430 10 N -0.331 5.331 11 C -0.012 4.012 12 C -0.190 4.190 13 C 0.068 3.932 14 H 0.068 0.932 15 N -0.361 5.361 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.127 4.127 25 H 0.082 0.918 26 C -0.196 4.196 27 C -0.004 4.004 28 C -0.154 4.154 29 C -0.011 4.011 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.088 0.912 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.489 14.314 -0.480 19.674 hybrid contribution 0.379 -1.073 -0.662 1.317 sum -13.109 13.241 -1.143 18.668 Atomic orbital electron populations 1.22025 0.91919 1.04604 1.05319 1.20807 0.90637 0.83042 0.75273 1.90711 1.70675 1.31121 1.50293 1.48208 1.07589 1.06226 1.72691 1.21893 0.96880 0.84109 0.98899 1.21835 0.93532 1.01323 0.99356 1.21368 0.96251 0.96586 0.98847 1.20441 0.78418 0.82130 0.88536 1.90657 1.50991 1.70609 1.30790 1.48154 1.64211 1.06199 1.14495 1.21724 1.00718 0.94449 0.84272 1.22448 0.96894 0.97410 1.02289 1.20204 0.89868 0.93200 0.89897 0.93181 1.42491 1.02045 1.32449 1.59136 1.19249 0.92485 1.03152 1.21972 0.91219 1.24711 0.95418 0.99407 1.01248 1.69659 0.96825 1.41937 1.49549 0.86172 0.77224 0.82925 0.80162 1.20640 1.21977 1.21972 1.21697 0.98300 0.95626 0.97122 0.91752 1.21669 1.02598 0.98530 0.96758 1.21640 0.97598 0.91758 0.89371 1.21775 1.00295 0.93736 0.99641 1.21646 0.79109 1.02320 0.98057 0.89853 0.88746 0.88739 0.90678 0.88687 0.90604 0.89807 0.88514 0.90996 0.89730 0.90727 0.93391 0.78089 0.93547 0.93790 0.92817 0.91027 0.90717 0.89957 0.90257 0.90263 0.91198 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 10.00 36.00 0.36 -0.71 16 2 C 0.51 5.31 7.79 -10.99 -0.09 5.22 16 3 O -0.55 -8.07 16.52 5.56 0.09 -7.98 16 4 N -0.61 -5.58 2.97 -172.77 -0.51 -6.10 16 5 C 0.10 0.68 6.24 -3.71 -0.02 0.66 16 6 C -0.12 -1.04 5.34 -26.61 -0.14 -1.19 16 7 C -0.11 -1.17 1.86 -91.70 -0.17 -1.34 16 8 C 0.52 7.62 6.71 -10.98 -0.07 7.55 16 9 O -0.55 -10.03 15.70 5.56 0.09 -9.94 16 10 N -0.60 -8.99 2.98 -173.02 -0.52 -9.51 16 11 C 0.11 1.58 6.00 -3.93 -0.02 1.56 16 12 C -0.15 -2.21 5.76 -26.84 -0.15 -2.37 16 13 C 0.18 3.13 2.53 -67.89 -0.17 2.95 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -15.85 3.65 -53.39 -0.19 -16.04 16 16 C -0.24 -5.99 9.93 -15.06 -0.15 -6.13 16 17 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -26.52 13.06 55.49 0.72 -25.80 16 20 Si 0.90 21.28 29.55 -169.99 -5.02 16.26 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C -0.11 -1.67 2.67 -90.50 -0.24 -1.91 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 C -0.14 -2.14 9.06 37.16 0.34 -1.81 16 27 C 0.12 1.94 5.41 -3.71 -0.02 1.92 16 28 C -0.12 -1.27 4.98 -26.58 -0.13 -1.40 16 29 C 0.11 1.08 6.44 -3.71 -0.02 1.06 16 30 H 0.08 0.31 5.33 -51.93 -0.28 0.03 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.41 5.27 -51.93 -0.27 0.14 16 35 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.93 5.83 -51.93 -0.30 0.63 16 38 H 0.07 0.80 5.33 -51.93 -0.28 0.53 16 39 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.38 9.18 5.92 -40.82 -0.24 8.94 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 47 H 0.07 1.38 6.64 -51.93 -0.34 1.03 16 48 H 0.08 1.37 7.03 -51.93 -0.37 1.01 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.08 1.02 7.91 -51.92 -0.41 0.61 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.10 1.06 7.00 -51.92 -0.36 0.70 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -32.32 395.42 -8.88 -41.20 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.69 Total: 8.31 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.81 Total: 3.64 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.50 Total: -57.44 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.18 Total: -17.93 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.32 -8.88 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036285436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.885 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds