Wall clock time and date at job start Tue Mar 31 2020 21:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 120.00271 * 2 1 4 4 N 1.34775 * 120.00335 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.63679 * 180.02562 * 4 2 1 6 6 C 1.53191 * 108.77436 * 233.59030 * 5 4 2 7 7 C 1.53038 * 109.31307 * 305.35944 * 6 5 4 8 8 C 1.50702 * 109.46192 * 181.38884 * 7 6 5 9 9 O 1.21284 * 119.99905 * 264.67393 * 8 7 6 10 10 N 1.34774 * 120.00078 * 84.95258 * 8 7 6 11 11 C 1.46929 * 120.62978 * 4.41311 * 10 8 7 12 12 C 1.53192 * 108.77345 * 233.58683 * 11 10 8 13 13 C 1.53036 * 109.31345 * 305.36403 * 12 11 10 14 14 H 1.08998 * 109.46411 * 301.35686 * 13 12 11 15 15 N 1.46505 * 109.45992 * 181.38789 * 13 12 11 16 16 C 1.36936 * 119.99925 * 85.00039 * 15 13 12 17 17 H 1.07995 * 120.00250 * 0.02562 * 16 15 13 18 18 C 1.38818 * 119.99818 * 180.02562 * 16 15 13 19 19 N 1.31618 * 119.99593 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46917 * 59.99646 * 20 18 16 22 22 H 1.48497 * 109.46839 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46902 * 299.99719 * 20 18 16 24 24 C 1.53035 * 109.53885 * 61.36974 * 13 12 11 25 25 H 1.09000 * 109.50221 * 58.61672 * 24 13 12 26 26 C 1.52999 * 109.49890 * 178.68401 * 24 13 12 27 27 C 1.46924 * 120.63419 * 184.13411 * 10 8 7 28 28 C 1.53038 * 109.53834 * 61.36663 * 7 6 5 29 29 C 1.46932 * 120.62956 * 359.97438 * 4 2 1 30 30 H 1.08994 * 109.47183 * 240.00234 * 1 2 3 31 31 H 1.09003 * 109.47525 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47055 * 120.00130 * 1 2 3 33 33 H 1.08992 * 109.58635 * 113.79788 * 5 4 2 34 34 H 1.09005 * 109.69786 * 353.44174 * 5 4 2 35 35 H 1.08998 * 109.49550 * 185.41320 * 6 5 4 36 36 H 1.08996 * 109.50037 * 65.31248 * 6 5 4 37 37 H 1.09007 * 109.45987 * 301.36161 * 7 6 5 38 38 H 1.09004 * 109.58470 * 353.37077 * 11 10 8 39 39 H 1.08992 * 109.58539 * 113.80052 * 11 10 8 40 40 H 1.09006 * 109.49696 * 65.31792 * 12 11 10 41 41 H 1.09004 * 109.49452 * 185.41521 * 12 11 10 42 42 H 0.96994 * 120.00001 * 265.00058 * 15 13 12 43 43 H 0.97006 * 119.99272 * 180.02562 * 19 18 16 44 44 H 1.09007 * 109.47429 * 59.99997 * 26 24 13 45 45 H 1.09003 * 109.47366 * 179.97438 * 26 24 13 46 46 H 1.08996 * 109.47048 * 299.99202 * 26 24 13 47 47 H 1.09001 * 109.58823 * 246.20272 * 27 10 8 48 48 H 1.09007 * 109.58093 * 6.62473 * 27 10 8 49 49 H 1.09001 * 109.49821 * 58.58337 * 28 7 6 50 50 H 1.09001 * 109.50364 * 178.68436 * 28 7 6 51 51 H 1.08995 * 109.58908 * 246.20214 * 29 4 2 52 52 H 1.09007 * 109.57952 * 6.48467 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6501 -1.1834 0.0011 6 6 4.1340 -2.0499 -1.1658 7 6 3.4902 -3.4349 -1.0688 8 6 3.9904 -4.3012 -2.1959 9 8 3.3455 -4.3979 -3.2185 10 7 5.1515 -4.9729 -2.0654 11 6 5.8922 -4.9480 -0.7968 12 6 7.3317 -4.5042 -1.0750 13 6 7.9443 -5.4134 -2.1427 14 1 7.9206 -6.4468 -1.7970 15 7 9.3321 -5.0125 -2.3875 16 6 10.3349 -5.4943 -1.5891 17 1 10.1029 -6.1701 -0.7793 18 6 11.6497 -5.1140 -1.8207 19 7 11.9324 -4.2907 -2.8079 20 14 13.0178 -5.7718 -0.7321 21 1 13.0518 -7.2538 -0.8211 22 1 14.3196 -5.2191 -1.1848 23 1 12.7694 -5.3660 0.6746 24 6 7.1421 -5.2915 -3.4403 25 1 7.1451 -4.2539 -3.7739 26 6 7.7748 -6.1758 -4.5167 27 6 5.6976 -5.7490 -3.1871 28 6 1.9689 -3.3001 -1.1658 29 6 1.4603 -2.4477 0.0017 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 4.0105 -1.6015 0.9409 34 1 4.0288 -0.1680 -0.1162 35 1 5.2185 -2.1490 -1.1201 36 1 3.8503 -1.5821 -2.1085 37 1 3.7539 -3.8920 -0.1149 38 1 5.4191 -4.2450 -0.1112 39 1 5.8959 -5.9450 -0.3562 40 1 7.3324 -3.4737 -1.4305 41 1 7.9175 -4.5737 -0.1583 42 1 9.5405 -4.4058 -3.1150 43 1 12.8513 -4.0253 -2.9700 44 1 7.7705 -7.2136 -4.1833 45 1 7.2028 -6.0891 -5.4406 46 1 8.8014 -5.8550 -4.6933 47 1 5.6857 -6.8100 -2.9375 48 1 5.0959 -5.5746 -4.0792 49 1 1.7055 -2.8204 -2.1085 50 1 1.5122 -4.2887 -1.1201 51 1 1.6426 -2.9687 0.9415 52 1 0.3918 -2.2656 -0.1140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036285437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:40 Heat of formation + Delta-G solvation = -68.568572 kcal Electronic energy + Delta-G solvation = -30694.087979 eV Core-core repulsion = 26693.182505 eV Total energy + Delta-G solvation = -4000.905474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.87101 -39.90604 -38.01976 -37.05319 -34.68866 -33.59769 -32.64801 -31.78594 -31.48955 -29.81711 -29.34124 -27.10916 -25.70294 -24.75060 -23.58291 -22.85678 -21.87348 -21.54003 -19.97628 -19.40926 -18.71233 -17.43930 -17.16831 -17.07143 -16.19377 -15.86177 -15.76064 -15.17459 -14.98378 -14.50206 -14.22631 -14.15373 -13.86538 -13.79064 -13.59651 -13.56858 -13.34765 -13.09921 -12.77212 -12.51553 -12.49607 -12.38430 -12.27770 -12.07227 -11.83020 -11.62495 -11.54076 -11.25115 -11.01625 -10.96235 -10.93034 -10.83553 -10.65408 -10.43560 -10.26047 -10.08762 -9.80009 -9.68253 -9.63781 -8.98572 -8.92922 -8.51035 -7.00413 -5.80838 -3.09772 2.33370 2.59433 2.67893 3.03617 3.39982 3.44841 3.46086 4.18128 4.28446 4.35459 4.54200 4.57605 4.68958 4.76653 4.86502 4.91186 4.98936 5.00437 5.10515 5.16381 5.19354 5.23844 5.31907 5.35514 5.43459 5.47014 5.48692 5.51118 5.58046 5.65119 5.68987 5.75918 5.81296 5.92775 5.97966 6.04461 6.10835 6.18859 6.25877 6.34884 6.39821 6.49058 6.59204 6.76967 6.88644 7.01058 7.06972 7.47771 7.64420 7.87082 8.19073 8.37318 9.48692 10.05972 10.40681 11.41496 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.002628 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.003131 B =10652.904761 C =11727.121556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.512 3.488 3 O -0.547 6.547 4 N -0.614 5.614 5 C 0.113 3.887 6 C -0.124 4.124 7 C -0.107 4.107 8 C 0.519 3.481 9 O -0.549 6.549 10 N -0.605 5.605 11 C 0.104 3.896 12 C -0.152 4.152 13 C 0.184 3.816 14 H 0.047 0.953 15 N -0.720 5.720 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.109 4.109 25 H 0.069 0.931 26 C -0.136 4.136 27 C 0.120 3.880 28 C -0.117 4.117 29 C 0.108 3.892 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.050 0.950 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.072 0.928 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.706 0.988 6.261 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.425 6.425 4 N -0.349 5.349 5 C -0.009 4.009 6 C -0.162 4.162 7 C -0.129 4.129 8 C 0.307 3.693 9 O -0.427 6.427 10 N -0.337 5.337 11 C -0.019 4.019 12 C -0.193 4.193 13 C 0.074 3.926 14 H 0.065 0.935 15 N -0.360 5.360 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.129 4.129 25 H 0.087 0.913 26 C -0.194 4.194 27 C -0.003 4.003 28 C -0.155 4.155 29 C -0.015 4.015 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.105 0.895 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.091 0.909 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.576 1.410 5.830 24.327 hybrid contribution 1.079 -0.307 0.458 1.212 sum -22.496 1.103 6.288 23.385 Atomic orbital electron populations 1.21947 0.91835 1.05456 1.04135 1.20827 0.90668 0.83007 0.75390 1.90727 1.70774 1.31058 1.49932 1.48195 1.07078 1.06077 1.73521 1.21600 0.79185 1.02137 0.98020 1.21876 1.01257 0.93234 0.99847 1.21339 0.96822 0.96181 0.98523 1.20492 0.80517 0.79632 0.88654 1.90666 1.56516 1.64582 1.30928 1.48188 1.22054 1.49199 1.14218 1.21945 0.93652 1.01698 0.84618 1.22700 0.92949 1.01322 1.02348 1.20181 0.85462 0.95957 0.91016 0.93475 1.42399 0.99893 1.56131 1.37623 1.19154 0.86708 1.22157 1.09049 0.91318 1.24733 0.97299 1.00058 0.98717 1.69649 1.18692 1.37802 1.31831 0.86303 0.81799 0.78328 0.79939 1.21315 1.21740 1.21316 1.21817 0.93282 1.00298 0.97521 0.91297 1.21662 1.01887 0.99240 0.96633 1.21799 0.94375 0.94558 0.89562 1.21780 0.93603 1.00799 0.99363 1.21829 0.96958 0.83845 0.98908 0.89394 0.89030 0.89274 0.91050 0.88442 0.89545 0.90696 0.88636 0.90313 0.91463 0.92153 0.90555 0.78216 0.93437 0.93070 0.93857 0.90737 0.91640 0.89500 0.90139 0.90162 0.90945 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 8.67 36.00 0.31 -0.68 16 2 C 0.51 5.16 7.81 -10.99 -0.09 5.08 16 3 O -0.55 -8.00 16.50 5.55 0.09 -7.91 16 4 N -0.61 -5.29 2.97 -172.74 -0.51 -5.80 16 5 C 0.11 1.04 6.43 -3.71 -0.02 1.02 16 6 C -0.12 -1.22 5.22 -26.61 -0.14 -1.36 16 7 C -0.11 -1.01 1.65 -91.73 -0.15 -1.16 16 8 C 0.52 6.77 6.80 -10.99 -0.07 6.69 16 9 O -0.55 -8.96 15.55 5.55 0.09 -8.87 16 10 N -0.60 -7.83 2.97 -172.50 -0.51 -8.34 16 11 C 0.10 1.21 6.25 -3.71 -0.02 1.19 16 12 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 13 C 0.18 3.33 2.19 -67.89 -0.15 3.18 16 14 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 15 N -0.72 -16.81 4.41 -53.39 -0.24 -17.05 16 16 C -0.24 -6.28 9.93 -15.06 -0.15 -6.42 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 20 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 C -0.11 -1.74 2.47 -90.28 -0.22 -1.96 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 C -0.14 -2.18 9.03 37.16 0.34 -1.84 16 27 C 0.12 1.67 5.73 -3.49 -0.02 1.65 16 28 C -0.12 -0.93 4.86 -26.59 -0.13 -1.06 16 29 C 0.11 0.63 6.35 -3.68 -0.02 0.60 16 30 H 0.09 0.31 7.94 -51.93 -0.41 -0.10 16 31 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.09 0.38 7.70 -51.93 -0.40 -0.02 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.08 7.01 -51.93 -0.36 0.71 16 35 H 0.09 0.89 7.95 -51.93 -0.41 0.48 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 0.73 6.28 -51.93 -0.33 0.40 16 38 H 0.08 0.73 5.22 -51.93 -0.27 0.46 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.38 9.76 7.51 -40.82 -0.31 9.45 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 1.28 7.03 -51.92 -0.37 0.92 16 49 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 50 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.09 0.34 5.93 -51.93 -0.31 0.03 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -33.42 400.63 -9.13 -42.55 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -9.00 Total: 7.29 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.79 Total: 2.00 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.54 Total: -57.81 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.18 Total: -16.79 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.42 -9.13 -42.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036285437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.021 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds