Wall clock time and date at job start Tue Mar 31 2020 21:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 120.00271 * 2 1 4 4 N 1.34775 * 120.00335 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.63679 * 180.02562 * 4 2 1 6 6 C 1.53191 * 108.77436 * 233.59030 * 5 4 2 7 7 C 1.53038 * 109.31307 * 305.35944 * 6 5 4 8 8 C 1.50702 * 109.46192 * 181.38884 * 7 6 5 9 9 O 1.21284 * 119.99905 * 264.67393 * 8 7 6 10 10 N 1.34774 * 120.00078 * 84.95258 * 8 7 6 11 11 C 1.46929 * 120.62978 * 4.41311 * 10 8 7 12 12 C 1.53192 * 108.77345 * 233.58683 * 11 10 8 13 13 C 1.53036 * 109.31345 * 305.36403 * 12 11 10 14 14 H 1.08998 * 109.46411 * 301.35686 * 13 12 11 15 15 N 1.46505 * 109.45992 * 181.38789 * 13 12 11 16 16 C 1.36936 * 119.99925 * 85.00039 * 15 13 12 17 17 H 1.07995 * 120.00250 * 0.02562 * 16 15 13 18 18 C 1.38818 * 119.99818 * 180.02562 * 16 15 13 19 19 N 1.31618 * 119.99593 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46917 * 59.99646 * 20 18 16 22 22 H 1.48497 * 109.46839 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46902 * 299.99719 * 20 18 16 24 24 C 1.53035 * 109.53885 * 61.36974 * 13 12 11 25 25 H 1.09000 * 109.50221 * 58.61672 * 24 13 12 26 26 C 1.52999 * 109.49890 * 178.68401 * 24 13 12 27 27 C 1.46924 * 120.63419 * 184.13411 * 10 8 7 28 28 C 1.53038 * 109.53834 * 61.36663 * 7 6 5 29 29 C 1.46932 * 120.62956 * 359.97438 * 4 2 1 30 30 H 1.08994 * 109.47183 * 240.00234 * 1 2 3 31 31 H 1.09003 * 109.47525 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47055 * 120.00130 * 1 2 3 33 33 H 1.08992 * 109.58635 * 113.79788 * 5 4 2 34 34 H 1.09005 * 109.69786 * 353.44174 * 5 4 2 35 35 H 1.08998 * 109.49550 * 185.41320 * 6 5 4 36 36 H 1.08996 * 109.50037 * 65.31248 * 6 5 4 37 37 H 1.09007 * 109.45987 * 301.36161 * 7 6 5 38 38 H 1.09004 * 109.58470 * 353.37077 * 11 10 8 39 39 H 1.08992 * 109.58539 * 113.80052 * 11 10 8 40 40 H 1.09006 * 109.49696 * 65.31792 * 12 11 10 41 41 H 1.09004 * 109.49452 * 185.41521 * 12 11 10 42 42 H 0.96994 * 120.00001 * 265.00058 * 15 13 12 43 43 H 0.97006 * 119.99272 * 180.02562 * 19 18 16 44 44 H 1.09007 * 109.47429 * 59.99997 * 26 24 13 45 45 H 1.09003 * 109.47366 * 179.97438 * 26 24 13 46 46 H 1.08996 * 109.47048 * 299.99202 * 26 24 13 47 47 H 1.09001 * 109.58823 * 246.20272 * 27 10 8 48 48 H 1.09007 * 109.58093 * 6.62473 * 27 10 8 49 49 H 1.09001 * 109.49821 * 58.58337 * 28 7 6 50 50 H 1.09001 * 109.50364 * 178.68436 * 28 7 6 51 51 H 1.08995 * 109.58908 * 246.20214 * 29 4 2 52 52 H 1.09007 * 109.57952 * 6.48467 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6501 -1.1834 0.0011 6 6 4.1340 -2.0499 -1.1658 7 6 3.4902 -3.4349 -1.0688 8 6 3.9904 -4.3012 -2.1959 9 8 3.3455 -4.3979 -3.2185 10 7 5.1515 -4.9729 -2.0654 11 6 5.8922 -4.9480 -0.7968 12 6 7.3317 -4.5042 -1.0750 13 6 7.9443 -5.4134 -2.1427 14 1 7.9206 -6.4468 -1.7970 15 7 9.3321 -5.0125 -2.3875 16 6 10.3349 -5.4943 -1.5891 17 1 10.1029 -6.1701 -0.7793 18 6 11.6497 -5.1140 -1.8207 19 7 11.9324 -4.2907 -2.8079 20 14 13.0178 -5.7718 -0.7321 21 1 13.0518 -7.2538 -0.8211 22 1 14.3196 -5.2191 -1.1848 23 1 12.7694 -5.3660 0.6746 24 6 7.1421 -5.2915 -3.4403 25 1 7.1451 -4.2539 -3.7739 26 6 7.7748 -6.1758 -4.5167 27 6 5.6976 -5.7490 -3.1871 28 6 1.9689 -3.3001 -1.1658 29 6 1.4603 -2.4477 0.0017 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 4.0105 -1.6015 0.9409 34 1 4.0288 -0.1680 -0.1162 35 1 5.2185 -2.1490 -1.1201 36 1 3.8503 -1.5821 -2.1085 37 1 3.7539 -3.8920 -0.1149 38 1 5.4191 -4.2450 -0.1112 39 1 5.8959 -5.9450 -0.3562 40 1 7.3324 -3.4737 -1.4305 41 1 7.9175 -4.5737 -0.1583 42 1 9.5405 -4.4058 -3.1150 43 1 12.8513 -4.0253 -2.9700 44 1 7.7705 -7.2136 -4.1833 45 1 7.2028 -6.0891 -5.4406 46 1 8.8014 -5.8550 -4.6933 47 1 5.6857 -6.8100 -2.9375 48 1 5.0959 -5.5746 -4.0792 49 1 1.7055 -2.8204 -2.1085 50 1 1.5122 -4.2887 -1.1201 51 1 1.6426 -2.9687 0.9415 52 1 0.3918 -2.2656 -0.1140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036285437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:39 Heat of formation + Delta-G solvation = -90.184167 kcal Electronic energy + Delta-G solvation = -30695.025302 eV Core-core repulsion = 26693.182505 eV Total energy + Delta-G solvation = -4001.842797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.77608 -40.80966 -39.20997 -37.98481 -36.17612 -34.72340 -33.92177 -32.99417 -32.42257 -31.01682 -30.36299 -28.14592 -26.96289 -26.06729 -24.40141 -24.19983 -23.10123 -22.49508 -21.20024 -20.31591 -19.65528 -19.01757 -18.30865 -18.01462 -16.93023 -16.85177 -16.75393 -16.47370 -16.17119 -15.72480 -15.50002 -15.26493 -14.98451 -14.93431 -14.84656 -14.42675 -14.27057 -14.07478 -13.85131 -13.67483 -13.42937 -13.15169 -13.09316 -12.98491 -12.91451 -12.88908 -12.81334 -12.73461 -12.46157 -12.23659 -12.20067 -12.05480 -11.84954 -11.73030 -11.71574 -11.59526 -11.14897 -10.92444 -10.84523 -10.65986 -9.69711 -9.64047 -8.95470 -7.90348 -5.17768 1.48870 1.50853 1.55821 1.56840 1.62437 1.99143 2.08393 2.58611 3.38563 3.43521 3.61895 3.66407 3.79275 3.81466 3.89473 4.02235 4.03933 4.05781 4.17890 4.28939 4.31965 4.39055 4.43359 4.49356 4.50841 4.60635 4.64853 4.67109 4.73522 4.74208 4.79754 4.81603 4.82246 4.85088 4.92257 4.99496 5.02743 5.07922 5.14662 5.19637 5.29611 5.34721 5.40539 5.51991 5.52705 5.57529 5.66073 6.30834 6.41702 6.44643 7.15530 7.16198 7.37411 8.14222 8.36801 9.33107 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.002628 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.003131 B =10652.904761 C =11727.121556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.501 3.499 3 O -0.606 6.606 4 N -0.613 5.613 5 C 0.114 3.886 6 C -0.115 4.115 7 C -0.101 4.101 8 C 0.516 3.484 9 O -0.584 6.584 10 N -0.606 5.606 11 C 0.113 3.887 12 C -0.143 4.143 13 C 0.179 3.821 14 H 0.048 0.952 15 N -0.732 5.732 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.967 3.033 21 H -0.279 1.279 22 H -0.302 1.302 23 H -0.277 1.277 24 C -0.099 4.099 25 H 0.049 0.951 26 C -0.131 4.131 27 C 0.127 3.873 28 C -0.113 4.113 29 C 0.109 3.891 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.369 0.631 43 H 0.248 0.752 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.100 0.900 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.431 -0.889 8.840 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.292 3.708 3 O -0.488 6.488 4 N -0.346 5.346 5 C -0.008 4.008 6 C -0.154 4.154 7 C -0.122 4.122 8 C 0.306 3.694 9 O -0.465 6.465 10 N -0.338 5.338 11 C -0.010 4.010 12 C -0.184 4.184 13 C 0.071 3.929 14 H 0.066 0.934 15 N -0.371 5.371 16 C -0.360 4.360 17 H 0.097 0.903 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.797 3.203 21 H -0.205 1.205 22 H -0.229 1.229 23 H -0.203 1.203 24 C -0.119 4.119 25 H 0.068 0.932 26 C -0.189 4.189 27 C 0.004 3.996 28 C -0.152 4.152 29 C -0.012 4.012 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.201 0.799 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.074 0.926 50 H 0.112 0.888 51 H 0.118 0.882 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.363 -0.529 8.451 27.689 hybrid contribution 1.869 0.238 -0.412 1.928 sum -24.494 -0.291 8.039 25.781 Atomic orbital electron populations 1.21972 0.88244 1.05973 1.06399 1.21686 0.92474 0.82446 0.74201 1.90701 1.72202 1.33145 1.52748 1.48347 1.06844 1.06996 1.72418 1.21524 0.80111 1.00623 0.98583 1.21758 1.00959 0.93752 0.98953 1.21399 0.97837 0.94720 0.98203 1.21143 0.80027 0.79209 0.89045 1.90654 1.57594 1.65619 1.32614 1.48272 1.22197 1.48985 1.14315 1.21986 0.90852 1.03666 0.84466 1.22484 0.95522 0.99795 1.00605 1.20434 0.83333 0.96327 0.92848 0.93352 1.42602 1.01801 1.55811 1.36910 1.19558 0.87303 1.20681 1.08499 0.90325 1.25496 0.99732 1.01326 1.00464 1.69820 1.18368 1.40076 1.34078 0.85295 0.78565 0.77853 0.78566 1.20521 1.22913 1.20318 1.21681 0.94602 0.99264 0.96403 0.93244 1.21581 1.00060 0.99480 0.97740 1.21638 0.92328 0.95564 0.90087 1.21767 0.92417 1.01753 0.99251 1.22081 0.98065 0.82042 0.99058 0.86372 0.89597 0.87374 0.88646 0.91059 0.90130 0.93393 0.85583 0.87073 0.89382 0.93651 0.91351 0.79935 0.94355 0.92226 0.91961 0.94205 0.89907 0.90252 0.92602 0.88809 0.88173 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 8.67 71.23 0.62 -0.83 16 2 C 0.50 9.51 7.81 87.66 0.68 10.19 16 3 O -0.61 -18.17 16.50 -3.05 -0.05 -18.22 16 4 N -0.61 -9.21 2.97 -818.80 -2.43 -11.64 16 5 C 0.11 1.97 6.43 86.36 0.56 2.52 16 6 C -0.12 -2.17 5.22 30.67 0.16 -2.01 16 7 C -0.10 -1.60 1.65 -11.51 -0.02 -1.62 16 8 C 0.52 12.44 6.80 87.66 0.60 13.04 16 9 O -0.58 -18.53 15.55 -3.04 -0.05 -18.57 16 10 N -0.61 -14.32 2.97 -818.05 -2.43 -16.75 16 11 C 0.11 2.25 6.25 86.36 0.54 2.79 16 12 C -0.14 -4.24 5.66 30.67 0.17 -4.06 16 13 C 0.18 6.36 2.19 45.01 0.10 6.46 16 14 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 15 N -0.73 -34.78 4.41 -322.82 -1.42 -36.21 16 16 C -0.23 -11.99 9.93 84.03 0.83 -11.16 16 17 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 19 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 20 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 C -0.10 -3.15 2.47 -10.57 -0.03 -3.18 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 C -0.13 -4.19 9.03 71.98 0.65 -3.54 16 27 C 0.13 3.35 5.73 86.51 0.50 3.85 16 28 C -0.11 -1.45 4.86 30.69 0.15 -1.30 16 29 C 0.11 0.81 6.35 86.38 0.55 1.36 16 30 H 0.12 0.33 7.94 -2.39 -0.02 0.31 16 31 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 32 H 0.11 0.55 7.70 -2.39 -0.02 0.53 16 33 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.63 7.01 -2.38 -0.02 1.62 16 35 H 0.08 1.60 7.95 -2.39 -0.02 1.58 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.13 1.27 6.28 -2.38 -0.01 1.25 16 38 H 0.11 1.55 5.22 -2.38 -0.01 1.54 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.37 19.55 7.51 -92.71 -0.70 18.86 16 43 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 44 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.04 1.55 7.36 -2.39 -0.02 1.53 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.08 2.27 7.03 -2.38 -0.02 2.25 16 49 H 0.06 1.02 7.92 -2.39 -0.02 1.00 16 50 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 52 H 0.12 0.28 5.93 -2.38 -0.01 0.27 16 Total: -1.00 -77.26 400.63 2.67 -74.59 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.21 Total: 29.69 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.52 Total: 8.60 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -6.00 Total: -123.21 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.10 Total: -36.79 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -77.26 2.67 -74.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036285437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.592 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds