Wall clock time and date at job start Tue Mar 31 2020 21:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.51994 * 2 1 4 4 C 1.53182 * 109.49780 * 120.08410 * 2 1 3 5 5 N 1.46928 * 108.77965 * 174.58667 * 4 2 1 6 6 C 1.34775 * 120.63051 * 126.36661 * 5 4 2 7 7 O 1.21273 * 120.00317 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99730 * 180.02562 * 6 5 4 9 9 N 1.46497 * 109.47384 * 180.02562 * 8 6 5 10 10 C 1.47200 * 119.78430 * 270.02632 * 9 8 6 11 11 C 1.53036 * 108.63955 * 251.96610 * 10 9 8 12 12 C 1.51779 * 110.87112 * 273.52677 * 11 10 9 13 13 C 1.51796 * 113.81037 * 67.00218 * 12 11 10 14 14 C 1.53059 * 110.74880 * 293.18508 * 13 12 11 15 15 C 1.33367 * 119.78457 * 90.00042 * 9 8 6 16 16 O 1.21279 * 119.89437 * 359.72119 * 15 9 8 17 17 C 1.46925 * 118.73446 * 306.64690 * 5 4 2 18 18 C 1.52759 * 109.01183 * 53.30291 * 17 5 4 19 19 C 1.53039 * 109.38589 * 305.59118 * 18 17 5 20 20 H 1.09002 * 109.46031 * 301.22108 * 19 18 17 21 21 N 1.46500 * 109.46406 * 181.25918 * 19 18 17 22 22 C 1.36939 * 119.99950 * 84.92775 * 21 19 18 23 23 H 1.07995 * 119.99889 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99790 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00084 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99960 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47150 * 60.00097 * 26 24 22 28 28 H 1.48506 * 109.47304 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47442 * 300.00180 * 26 24 22 30 30 H 1.08995 * 109.46855 * 299.92090 * 1 2 3 31 31 H 1.09003 * 109.46653 * 59.91463 * 1 2 3 32 32 H 1.08999 * 109.46820 * 179.91634 * 1 2 3 33 33 H 1.09008 * 109.58820 * 54.79749 * 4 2 1 34 34 H 1.09003 * 109.58991 * 294.37701 * 4 2 1 35 35 H 1.09010 * 109.47335 * 59.99910 * 8 6 5 36 36 H 1.08999 * 109.47385 * 300.00235 * 8 6 5 37 37 H 1.09004 * 109.60135 * 11.71718 * 10 9 8 38 38 H 1.08995 * 109.60380 * 132.04484 * 10 9 8 39 39 H 1.08995 * 109.19185 * 153.17232 * 11 10 9 40 40 H 1.08997 * 109.20704 * 33.88447 * 11 10 9 41 41 H 1.09003 * 108.61696 * 305.88418 * 12 11 10 42 42 H 1.08999 * 108.61800 * 188.12600 * 12 11 10 43 43 H 1.09001 * 109.21876 * 53.51618 * 13 12 11 44 44 H 1.08998 * 109.22087 * 172.85632 * 13 12 11 45 45 H 1.08999 * 109.63098 * 204.62261 * 14 13 12 46 46 H 1.09004 * 109.63318 * 325.22250 * 14 13 12 47 47 H 1.08998 * 109.58790 * 173.14134 * 17 5 4 48 48 H 1.08998 * 109.58374 * 293.56532 * 17 5 4 49 49 H 1.09003 * 109.56842 * 185.55055 * 18 17 5 50 50 H 1.09006 * 109.38475 * 65.51531 * 18 17 5 51 51 H 0.96997 * 119.99833 * 264.93288 * 21 19 18 52 52 H 0.97001 * 120.00238 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5047 -0.8292 1.1695 6 6 4.2812 -0.3857 2.1779 7 8 3.7732 0.1056 3.1635 8 6 5.7806 -0.5003 2.0807 9 7 6.3920 0.0474 3.2941 10 6 6.7493 1.4742 3.3528 11 6 8.2733 1.5997 3.2920 12 6 8.8811 1.4835 4.6779 13 6 8.7294 0.1073 5.3001 14 6 7.2583 -0.1953 5.5951 15 6 6.6208 -0.7498 4.3385 16 8 6.3175 -1.9226 4.2816 17 6 4.1055 -1.4215 -0.0333 18 6 3.5709 -0.6950 -1.2661 19 6 2.0408 -0.7230 -1.2484 20 1 1.6967 -1.7572 -1.2354 21 7 1.5265 -0.0528 -2.4453 22 6 1.3964 -0.7491 -3.6173 23 1 1.6726 -1.7923 -3.6591 24 6 0.9096 -0.1139 -4.7515 25 7 0.5735 1.1576 -4.7006 26 14 0.7314 -1.0637 -6.3500 27 1 -0.2007 -2.2019 -6.1482 28 1 0.1949 -0.1645 -7.4031 29 1 2.0591 -1.5798 -6.7699 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7217 1.2979 34 1 1.7638 -0.1581 2.1389 35 1 6.1322 0.0575 1.2126 36 1 6.0589 -1.5489 1.9756 37 1 6.3049 1.9976 2.5061 38 1 6.3810 1.9054 4.2836 39 1 8.5364 2.5675 2.8652 40 1 8.6732 0.8086 2.6578 41 1 8.4033 2.2147 5.3299 42 1 9.9430 1.7210 4.6132 43 1 9.1191 -0.6427 4.6118 44 1 9.2971 0.0693 6.2299 45 1 7.1893 -0.9312 6.3962 46 1 6.7481 0.7214 5.8909 47 1 5.1895 -1.3160 0.0099 48 1 3.8412 -2.4774 -0.0916 49 1 3.9335 -1.1896 -2.1672 50 1 3.9159 0.3390 -1.2547 51 1 1.2782 0.8841 -2.4076 52 1 0.2329 1.6014 -5.4931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036287618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:03 Heat of formation + Delta-G solvation = -66.588308 kcal Electronic energy + Delta-G solvation = -30633.451491 eV Core-core repulsion = 26632.631887 eV Total energy + Delta-G solvation = -4000.819604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.90159 -39.72830 -37.62380 -36.94730 -34.85766 -34.62464 -32.89655 -31.50812 -31.38907 -29.61760 -29.12127 -26.78644 -25.68818 -24.80309 -24.08648 -22.79156 -21.67700 -21.05683 -20.19081 -19.36724 -18.57287 -17.52288 -17.37796 -17.07007 -16.77065 -15.79963 -15.19701 -15.04779 -14.90606 -14.55989 -14.38976 -14.11902 -13.93550 -13.79116 -13.78176 -13.49642 -13.31767 -13.13374 -12.88983 -12.53340 -12.47290 -12.23658 -12.04257 -11.77434 -11.75405 -11.59125 -11.25791 -11.17748 -11.16353 -11.02438 -10.94693 -10.82554 -10.64634 -10.41871 -10.24976 -10.04148 -9.86296 -9.76163 -9.63767 -8.94330 -8.83965 -8.46708 -6.99375 -5.80080 -3.08850 2.42028 2.66306 2.68618 3.23385 3.40866 3.45952 3.46574 4.13950 4.36635 4.39677 4.45222 4.51393 4.55503 4.81005 4.89419 4.99476 5.03292 5.06491 5.12438 5.20335 5.24878 5.27584 5.31843 5.35370 5.41922 5.50389 5.52155 5.58671 5.60474 5.67097 5.67732 5.75906 5.78647 5.87932 5.95955 6.06883 6.09346 6.16278 6.28086 6.37644 6.42107 6.52295 6.61618 6.79142 6.90714 7.03018 7.16501 7.50519 7.65845 8.00912 8.24124 8.38210 9.49586 10.06904 10.41826 11.42314 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.002388 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.374492 B =11723.850650 C =12143.726181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.605 5.605 6 C 0.501 3.499 7 O -0.542 6.542 8 C 0.093 3.907 9 N -0.590 5.590 10 C 0.113 3.887 11 C -0.141 4.141 12 C -0.123 4.123 13 C -0.113 4.113 14 C -0.136 4.136 15 C 0.522 3.478 16 O -0.549 6.549 17 C 0.107 3.893 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.059 0.941 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.452 0.912 18.568 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.338 5.338 6 C 0.287 3.713 7 O -0.419 6.419 8 C -0.033 4.033 9 N -0.321 5.321 10 C -0.009 4.009 11 C -0.179 4.179 12 C -0.160 4.160 13 C -0.150 4.150 14 C -0.176 4.176 15 C 0.311 3.689 16 O -0.426 6.426 17 C -0.017 4.017 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.078 0.922 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.006 0.444 18.909 24.777 hybrid contribution -0.207 -0.099 -1.183 1.205 sum 15.799 0.345 17.726 23.747 Atomic orbital electron populations 1.21659 0.94133 1.01797 1.01800 1.21733 0.96583 0.99935 0.94617 0.91345 1.21696 0.78469 1.00802 0.99229 1.48164 1.07207 1.60465 1.17985 1.21009 0.89682 0.77856 0.82756 1.90655 1.75260 1.44973 1.31037 1.21411 0.90599 1.02849 0.88439 1.47433 1.60108 1.10147 1.14439 1.21861 0.94747 0.80457 1.03861 1.21835 0.95181 1.03115 0.97768 1.21184 1.01412 0.97048 0.96367 1.21231 0.94541 0.97615 1.01657 1.21984 0.96729 1.03298 0.95606 1.20521 0.77644 0.86035 0.84736 1.90713 1.52570 1.17073 1.82251 1.21799 0.97302 0.97792 0.84774 1.22617 1.00515 1.00373 0.95834 1.20188 0.90309 0.95750 0.86415 0.93393 1.42399 1.76495 1.11413 1.05738 1.19169 1.36035 0.94079 0.87687 0.91284 1.24727 1.02053 0.96021 0.98056 1.69646 1.49937 1.09470 1.29021 0.86298 0.77745 0.78726 0.83575 1.21298 1.21758 1.21328 0.93861 0.90750 0.93038 0.91643 0.89520 0.87404 0.86923 0.89550 0.90206 0.90287 0.91054 0.91685 0.91602 0.91549 0.90645 0.88520 0.89097 0.90719 0.91256 0.90437 0.92225 0.78234 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.02 37.16 0.34 -1.89 16 2 C -0.11 -1.78 2.46 -90.50 -0.22 -2.00 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.12 1.81 5.72 -3.71 -0.02 1.79 16 5 N -0.60 -8.62 2.98 -173.04 -0.52 -9.14 16 6 C 0.50 7.38 7.76 -10.99 -0.09 7.29 16 7 O -0.54 -9.73 15.84 5.56 0.09 -9.64 16 8 C 0.09 1.06 4.15 -5.20 -0.02 1.04 16 9 N -0.59 -6.40 1.94 -174.57 -0.34 -6.74 16 10 C 0.11 0.88 5.87 -3.64 -0.02 0.86 16 11 C -0.14 -0.79 5.74 -27.33 -0.16 -0.95 16 12 C -0.12 -0.61 5.27 -27.96 -0.15 -0.76 16 13 C -0.11 -0.70 5.67 -27.31 -0.15 -0.85 16 14 C -0.14 -1.15 5.57 -27.50 -0.15 -1.30 16 15 C 0.52 6.50 6.79 -11.25 -0.08 6.42 16 16 O -0.55 -9.10 16.60 5.56 0.09 -9.01 16 17 C 0.11 1.35 6.31 -3.93 -0.02 1.33 16 18 C -0.15 -2.42 5.64 -26.83 -0.15 -2.57 16 19 C 0.18 3.40 2.19 -67.89 -0.15 3.25 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -16.97 4.41 -53.39 -0.24 -17.20 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 26 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.42 7.36 -51.93 -0.38 1.03 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 35 H 0.11 0.92 7.57 -51.92 -0.39 0.53 16 36 H 0.11 1.30 7.19 -51.93 -0.37 0.92 16 37 H 0.09 0.65 7.92 -51.93 -0.41 0.24 16 38 H 0.08 0.60 6.73 -51.93 -0.35 0.25 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.45 8.05 -51.93 -0.42 0.04 16 41 H 0.06 0.29 7.89 -51.93 -0.41 -0.12 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.81 8.13 -51.93 -0.42 0.39 16 46 H 0.09 0.66 6.77 -51.93 -0.35 0.31 16 47 H 0.07 0.74 5.93 -51.93 -0.31 0.44 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.38 9.78 7.50 -40.82 -0.31 9.48 16 52 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -33.89 400.87 -9.55 -43.44 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -9.09 Total: 7.34 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.30 Total: 4.75 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.37 Total: -59.73 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.18 Total: -18.66 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.89 -9.55 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036287618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.145 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds