Wall clock time and date at job start Tue Mar 31 2020 21:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.49831 * 2 1 4 4 C 1.53190 * 109.49627 * 239.92694 * 2 1 3 5 5 N 1.46933 * 108.77276 * 185.38216 * 4 2 1 6 6 C 1.34769 * 120.63064 * 233.58706 * 5 4 2 7 7 O 1.21280 * 120.00570 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99966 * 180.02562 * 6 5 4 9 9 N 1.46496 * 109.47277 * 180.02562 * 8 6 5 10 10 C 1.47191 * 119.78791 * 90.00137 * 9 8 6 11 11 C 1.52994 * 108.80085 * 252.03058 * 10 9 8 12 12 C 1.51780 * 110.87692 * 273.45122 * 11 10 9 13 13 C 1.51796 * 113.80838 * 66.99757 * 12 11 10 14 14 C 1.53056 * 110.75103 * 293.18666 * 13 12 11 15 15 C 1.33633 * 119.96019 * 270.22811 * 9 8 6 16 16 O 1.21281 * 119.83388 * 359.57594 * 15 9 8 17 17 C 1.46931 * 118.73405 * 53.86674 * 5 4 2 18 18 C 1.53623 * 108.54275 * 306.08909 * 17 5 4 19 19 C 1.53043 * 109.24133 * 54.86064 * 18 17 5 20 20 H 1.09000 * 109.44413 * 178.49700 * 19 18 17 21 21 N 1.46496 * 109.46127 * 58.53140 * 19 18 17 22 22 C 1.36932 * 120.00373 * 84.92862 * 21 19 18 23 23 H 1.08002 * 119.99965 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00242 * 179.97438 * 22 21 19 25 25 N 1.31609 * 119.99857 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99820 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46945 * 90.00479 * 26 24 22 28 28 H 1.48501 * 109.46985 * 210.00315 * 26 24 22 29 29 H 1.48492 * 109.47340 * 330.00353 * 26 24 22 30 30 H 1.08990 * 109.47231 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47089 * 300.07423 * 1 2 3 32 32 H 1.09003 * 109.46684 * 60.06691 * 1 2 3 33 33 H 1.09000 * 109.58297 * 65.60557 * 4 2 1 34 34 H 1.08993 * 109.58992 * 305.17143 * 4 2 1 35 35 H 1.09006 * 109.46814 * 59.99881 * 8 6 5 36 36 H 1.09006 * 109.47238 * 300.00687 * 8 6 5 37 37 H 1.09002 * 109.60723 * 132.19133 * 10 9 8 38 38 H 1.09000 * 109.60094 * 11.86243 * 10 9 8 39 39 H 1.08993 * 109.19875 * 33.81357 * 11 10 9 40 40 H 1.09001 * 109.18896 * 153.09819 * 11 10 9 41 41 H 1.08993 * 108.61672 * 188.11434 * 12 11 10 42 42 H 1.09001 * 108.61897 * 305.88104 * 12 11 10 43 43 H 1.09008 * 109.21962 * 53.51421 * 13 12 11 44 44 H 1.08999 * 109.21784 * 172.89892 * 13 12 11 45 45 H 1.09000 * 109.63601 * 204.62408 * 14 13 12 46 46 H 1.09006 * 109.63128 * 325.01816 * 14 13 12 47 47 H 1.08999 * 109.58706 * 65.92404 * 17 5 4 48 48 H 1.09000 * 109.58095 * 186.34933 * 17 5 4 49 49 H 1.09004 * 109.63632 * 294.86674 * 18 17 5 50 50 H 1.09007 * 109.45690 * 174.74178 * 18 17 5 51 51 H 0.97005 * 119.99825 * 264.93172 * 21 19 18 52 52 H 0.97007 * 120.00175 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8283 -1.1700 6 6 4.2807 -0.3853 -2.1789 7 8 3.7724 0.1059 -3.1644 8 6 5.7803 -0.5002 -2.0824 9 7 6.3911 0.0482 -3.2958 10 6 6.7492 1.4747 -3.3537 11 6 5.7707 2.1912 -4.2864 12 6 6.2402 2.1113 -5.7275 13 6 6.2130 0.7073 -6.3040 14 6 7.2425 -0.1852 -5.6067 15 6 6.6171 -0.7458 -4.3466 16 8 6.3224 -1.9209 -4.2894 17 6 4.1056 -1.4308 0.0278 18 6 3.5714 -0.6942 1.2656 19 6 2.0414 -0.7230 1.2483 20 1 1.6590 -0.2244 2.1389 21 7 1.5795 -2.1131 1.2308 22 6 1.4499 -2.8063 2.4046 23 1 1.6878 -2.3281 3.3433 24 6 1.0117 -4.1234 2.3880 25 7 0.7212 -4.7060 1.2442 26 14 0.8342 -5.0688 3.9894 27 1 -0.5375 -4.8801 4.5262 28 1 1.0741 -6.5131 3.7407 29 1 1.8248 -4.5649 4.9741 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.7634 -0.1578 -2.1389 34 1 1.6057 -1.7216 -1.2980 35 1 6.0583 -1.5489 -1.9773 36 1 6.1324 0.0577 -1.2147 37 1 7.7642 1.5819 -3.7363 38 1 6.6869 1.9082 -2.3555 39 1 4.7891 1.7248 -4.2029 40 1 5.6957 3.2378 -3.9914 41 1 5.6017 2.7503 -6.3375 42 1 7.2608 2.4903 -5.7826 43 1 5.2185 0.2825 -6.1672 44 1 6.4407 0.7523 -7.3690 45 1 7.5272 -1.0026 -6.2692 46 1 8.1239 0.4031 -5.3512 47 1 3.8349 -2.4852 0.0815 48 1 5.1901 -1.3317 -0.0183 49 1 3.9161 0.3398 1.2536 50 1 3.9344 -1.1883 2.1669 51 1 1.3654 -2.5425 0.3877 52 1 0.4147 -5.6263 1.2326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036287619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:07 Heat of formation + Delta-G solvation = -63.364930 kcal Electronic energy + Delta-G solvation = -31397.622401 eV Core-core repulsion = 27396.942574 eV Total energy + Delta-G solvation = -4000.679828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.77808 -39.60059 -37.60304 -36.76744 -34.72934 -34.25582 -32.85060 -31.38755 -31.21506 -29.33003 -29.10121 -26.65078 -25.62571 -24.65207 -23.91653 -23.45952 -21.65637 -20.80363 -20.06050 -18.84776 -18.16585 -17.46179 -17.34931 -16.91583 -16.75432 -15.41816 -15.18084 -15.09727 -14.59858 -14.36238 -14.31285 -14.03749 -13.92115 -13.78034 -13.62562 -13.32992 -13.26136 -13.05936 -12.70911 -12.51430 -12.39438 -12.20941 -12.04007 -11.59798 -11.49969 -11.38967 -11.20104 -11.01819 -10.95181 -10.90135 -10.84344 -10.79348 -10.50134 -10.44855 -10.19334 -9.84143 -9.76642 -9.75162 -9.55830 -8.94474 -8.72024 -8.19685 -6.98331 -5.78983 -3.07833 2.51657 2.80851 2.84558 3.41248 3.41880 3.46815 3.48770 4.30009 4.51606 4.56346 4.57026 4.61568 4.68024 4.96427 5.05403 5.10994 5.16552 5.19374 5.21611 5.32140 5.35690 5.39309 5.45808 5.50347 5.56192 5.58530 5.70198 5.72550 5.76348 5.79984 5.87545 5.92099 6.00300 6.06128 6.09976 6.18282 6.26406 6.29893 6.32649 6.42245 6.49656 6.64136 6.67646 6.75881 6.92755 7.01012 7.26828 7.67862 7.72980 8.12803 8.39210 8.42650 9.50786 10.07620 10.42417 11.43297 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.002852 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.237895 B = 9816.366585 C =10356.253828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.064 0.936 4 C 0.121 3.879 5 N -0.599 5.599 6 C 0.499 3.501 7 O -0.544 6.544 8 C 0.094 3.906 9 N -0.592 5.592 10 C 0.115 3.885 11 C -0.154 4.154 12 C -0.116 4.116 13 C -0.114 4.114 14 C -0.133 4.133 15 C 0.520 3.480 16 O -0.544 6.544 17 C 0.113 3.887 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.050 0.950 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.858 16.421 -10.155 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.082 0.918 4 C -0.002 4.002 5 N -0.332 5.332 6 C 0.285 3.715 7 O -0.422 6.422 8 C -0.032 4.032 9 N -0.324 5.324 10 C -0.007 4.007 11 C -0.193 4.193 12 C -0.153 4.153 13 C -0.152 4.152 14 C -0.174 4.174 15 C 0.309 3.691 16 O -0.421 6.421 17 C -0.010 4.010 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.434 15.975 -10.478 23.355 hybrid contribution -0.202 -0.731 0.842 1.133 sum 13.232 15.244 -9.635 22.368 Atomic orbital electron populations 1.21666 0.94292 1.03200 1.00357 1.21694 0.96451 0.98719 0.95829 0.91761 1.21619 0.78652 1.01500 0.98408 1.48119 1.07149 1.59631 1.18284 1.20956 0.89614 0.78056 0.82830 1.90583 1.75185 1.45503 1.30927 1.21417 0.90892 1.02829 0.88058 1.47528 1.60554 1.10085 1.14268 1.21822 0.98312 0.79575 1.01002 1.21966 1.02081 1.00836 0.94372 1.21116 1.01334 0.96546 0.96347 1.21223 0.99631 0.94891 0.99448 1.21963 0.99303 1.01355 0.94730 1.20612 0.78124 0.85951 0.84462 1.90738 1.52516 1.16840 1.82014 1.21843 0.96053 0.99255 0.83825 1.22603 1.00577 0.98439 0.97400 1.20203 0.90758 0.87393 0.94798 0.93191 1.42486 1.78984 1.07680 1.06979 1.19200 1.37382 0.93862 0.86540 0.91276 1.24714 1.02251 0.97210 0.96577 1.69647 1.51504 1.13104 1.23659 0.86240 0.77728 0.79413 0.83065 1.21844 1.21886 1.20854 0.91038 0.92835 0.93836 0.89955 0.90769 0.86939 0.87701 0.90588 0.89919 0.88324 0.91173 0.91867 0.92336 0.91011 0.90919 0.88642 0.89435 0.89495 0.91445 0.93345 0.90732 0.78063 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.06 37.16 0.34 -1.88 16 2 C -0.11 -1.73 2.67 -90.50 -0.24 -1.97 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.12 2.07 5.42 -3.71 -0.02 2.05 16 5 N -0.60 -9.67 2.97 -172.50 -0.51 -10.18 16 6 C 0.50 7.92 7.76 -10.99 -0.09 7.84 16 7 O -0.54 -9.93 13.64 5.56 0.08 -9.86 16 8 C 0.09 1.18 4.22 -5.19 -0.02 1.16 16 9 N -0.59 -6.96 1.98 -174.52 -0.35 -7.30 16 10 C 0.12 0.94 5.90 -3.67 -0.02 0.92 16 11 C -0.15 -1.37 5.74 -27.35 -0.16 -1.53 16 12 C -0.12 -0.88 5.27 -27.96 -0.15 -1.03 16 13 C -0.11 -1.02 5.66 -27.31 -0.15 -1.18 16 14 C -0.13 -1.26 5.57 -27.50 -0.15 -1.41 16 15 C 0.52 7.10 6.80 -11.14 -0.08 7.02 16 16 O -0.54 -9.98 16.62 5.56 0.09 -9.88 16 17 C 0.11 1.75 6.11 -3.48 -0.02 1.73 16 18 C -0.15 -2.35 5.79 -26.39 -0.15 -2.50 16 19 C 0.18 3.27 2.53 -67.89 -0.17 3.09 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.46 3.64 -53.38 -0.19 -16.65 16 22 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 26 Si 0.90 21.82 29.55 -169.99 -5.02 16.79 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.07 1.35 7.54 -51.93 -0.39 0.95 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 34 H 0.07 1.45 6.64 -51.93 -0.34 1.10 16 35 H 0.11 1.53 7.19 -51.93 -0.37 1.16 16 36 H 0.11 0.97 7.41 -51.93 -0.38 0.58 16 37 H 0.08 0.45 6.72 -51.93 -0.35 0.10 16 38 H 0.08 0.56 7.77 -51.93 -0.40 0.16 16 39 H 0.10 1.27 5.71 -51.93 -0.30 0.97 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.34 7.88 -51.93 -0.41 -0.07 16 43 H 0.07 0.86 7.86 -51.92 -0.41 0.46 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.88 8.13 -51.93 -0.42 0.46 16 46 H 0.09 0.59 6.79 -51.93 -0.35 0.24 16 47 H 0.09 1.64 7.74 -51.93 -0.40 1.24 16 48 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 51 H 0.38 9.54 5.93 -40.82 -0.24 9.30 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -32.89 392.29 -9.40 -42.29 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.80 Total: 9.85 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.33 Total: 5.57 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.33 Total: -60.67 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.17 Total: -19.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.89 -9.40 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036287619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.076 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds