Wall clock time and date at job start Tue Mar 31 2020 21:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.49670 * 2 1 4 4 C 1.53626 * 109.43002 * 120.22827 * 2 1 3 5 5 N 1.46927 * 108.53906 * 174.72296 * 4 2 1 6 6 C 1.34784 * 120.62995 * 126.36585 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.72079 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.71961 * 6 5 4 9 9 N 1.46497 * 109.47115 * 180.02562 * 8 6 5 10 10 C 1.47204 * 119.78695 * 269.72875 * 9 8 6 11 11 C 1.53487 * 108.37584 * 108.05909 * 10 9 8 12 12 C 1.51782 * 110.82257 * 86.59108 * 11 10 9 13 13 C 1.51787 * 113.81254 * 292.92777 * 12 11 10 14 14 C 1.53057 * 110.74866 * 66.80098 * 13 12 11 15 15 C 1.33367 * 119.79046 * 89.99772 * 9 8 6 16 16 O 1.21288 * 119.88835 * 0.28908 * 15 9 8 17 17 C 1.46923 * 118.73985 * 306.09366 * 5 4 2 18 18 C 1.53190 * 108.77809 * 53.85904 * 17 5 4 19 19 C 1.53036 * 109.31273 * 305.36826 * 18 17 5 20 20 H 1.09002 * 109.46004 * 181.37141 * 19 18 17 21 21 N 1.46505 * 109.45814 * 301.34442 * 19 18 17 22 22 C 1.36935 * 119.99918 * 274.99937 * 21 19 18 23 23 H 1.08003 * 120.00315 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99961 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00089 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99836 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47101 * 90.00042 * 26 24 22 28 28 H 1.48492 * 109.47088 * 209.99791 * 26 24 22 29 29 H 1.48498 * 109.47269 * 329.99881 * 26 24 22 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47102 * 300.06072 * 1 2 3 32 32 H 1.08995 * 109.47245 * 60.06293 * 1 2 3 33 33 H 1.08998 * 109.74190 * 54.98677 * 4 2 1 34 34 H 1.09001 * 109.66146 * 294.41086 * 4 2 1 35 35 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 36 36 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 37 37 H 1.09001 * 109.60476 * 227.79255 * 10 9 8 38 38 H 1.08996 * 109.60034 * 348.28303 * 10 9 8 39 39 H 1.09000 * 109.29179 * 326.21560 * 11 10 9 40 40 H 1.09004 * 109.13259 * 206.86937 * 11 10 9 41 41 H 1.09000 * 108.61566 * 171.80093 * 12 11 10 42 42 H 1.09007 * 108.49973 * 53.96344 * 12 11 10 43 43 H 1.09005 * 109.21885 * 306.47773 * 13 12 11 44 44 H 1.09001 * 109.22389 * 187.13186 * 13 12 11 45 45 H 1.08995 * 109.63589 * 155.38203 * 14 13 12 46 46 H 1.09006 * 109.79255 * 34.88261 * 14 13 12 47 47 H 1.09007 * 109.58781 * 173.64836 * 17 5 4 48 48 H 1.08998 * 109.58580 * 293.92653 * 17 5 4 49 49 H 1.09001 * 109.49704 * 65.32018 * 18 17 5 50 50 H 1.09002 * 109.49744 * 185.41599 * 18 17 5 51 51 H 0.96998 * 119.99944 * 95.00451 * 21 19 18 52 52 H 0.97000 * 120.00245 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7294 1.2518 5 7 3.5046 -0.8296 1.1692 6 6 4.2812 -0.3871 2.1781 7 8 3.7732 0.1039 3.1639 8 6 5.7806 -0.5026 2.0812 9 7 6.3919 0.0440 3.2951 10 6 6.7561 1.4691 3.3525 11 6 5.7721 2.1827 4.2897 12 6 6.2414 2.0978 5.7307 13 6 6.2149 0.6918 6.3020 14 6 7.2448 -0.1977 5.6014 15 6 6.6199 -0.7538 4.3393 16 8 6.3252 -1.9288 4.2778 17 6 4.1052 -1.4267 -0.0313 18 6 3.5708 -0.6947 -1.2663 19 6 2.0408 -0.7227 -1.2486 20 1 1.6581 -0.2236 -2.1389 21 7 1.5783 -2.1127 -1.2314 22 6 1.4467 -2.8051 -2.4055 23 1 1.6843 -2.3266 -3.3442 24 6 1.0080 -4.1220 -2.3893 25 7 0.7181 -4.7050 -1.2455 26 14 0.8279 -5.0662 -3.9911 27 1 2.1048 -5.7563 -4.3051 28 1 -0.2570 -6.0708 -3.8541 29 1 0.4928 -4.1221 -5.0872 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.6084 -1.7288 1.2979 34 1 1.7630 -0.1669 2.1431 35 1 6.0581 -1.5514 1.9757 36 1 6.1327 0.0555 1.2136 37 1 7.7709 1.5721 3.7368 38 1 6.6948 1.9026 2.3543 39 1 4.7908 1.7160 4.2045 40 1 5.6972 3.2304 3.9984 41 1 5.6025 2.7343 6.3428 42 1 7.2623 2.4762 5.7848 43 1 5.2207 0.2669 6.1637 44 1 6.4418 0.7329 7.3673 45 1 7.5299 -1.0174 6.2608 46 1 8.1265 0.3898 5.3452 47 1 5.1896 -1.3246 0.0132 48 1 3.8396 -2.4824 -0.0862 49 1 3.9159 0.3392 -1.2541 50 1 3.9333 -1.1891 -2.1675 51 1 1.3652 -2.5426 -0.3884 52 1 0.4118 -5.6253 -1.2341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036287620.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:12 Heat of formation + Delta-G solvation = -63.008921 kcal Electronic energy + Delta-G solvation = -31400.150247 eV Core-core repulsion = 27399.485857 eV Total energy + Delta-G solvation = -4000.664390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.79263 -39.60092 -37.59956 -36.75153 -34.73497 -34.25700 -32.83879 -31.39679 -31.19550 -29.33802 -29.10971 -26.64760 -25.62589 -24.65452 -23.91884 -23.45632 -21.65813 -20.80408 -20.05588 -18.84961 -18.16662 -17.45906 -17.34766 -16.91810 -16.75503 -15.41284 -15.18406 -15.09871 -14.59811 -14.35820 -14.31067 -14.03486 -13.92544 -13.78430 -13.62312 -13.32984 -13.26444 -13.05340 -12.70187 -12.51329 -12.39999 -12.21231 -12.03955 -11.60222 -11.50079 -11.38891 -11.19802 -11.01515 -10.95310 -10.89496 -10.84869 -10.79436 -10.50351 -10.44159 -10.19167 -9.84484 -9.76531 -9.74610 -9.55914 -8.94205 -8.72297 -8.19688 -6.98306 -5.78948 -3.07834 2.52270 2.80922 2.84505 3.41206 3.42040 3.46917 3.48772 4.30251 4.51744 4.56272 4.57026 4.61546 4.67952 4.95909 5.04837 5.10768 5.15870 5.18996 5.21762 5.31852 5.35890 5.39321 5.45916 5.50657 5.56104 5.58750 5.70273 5.72611 5.76487 5.80434 5.87451 5.92042 6.00553 6.06138 6.09852 6.17901 6.26408 6.29952 6.32588 6.42280 6.49759 6.64095 6.67688 6.75734 6.92858 7.01154 7.27371 7.67860 7.72919 8.13243 8.39264 8.42641 9.50831 10.07635 10.42452 11.43330 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.002853 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.637630 B = 9812.677863 C =10352.121557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.064 0.936 4 C 0.121 3.879 5 N -0.599 5.599 6 C 0.499 3.501 7 O -0.544 6.544 8 C 0.094 3.906 9 N -0.591 5.591 10 C 0.115 3.885 11 C -0.154 4.154 12 C -0.116 4.116 13 C -0.114 4.114 14 C -0.134 4.134 15 C 0.520 3.480 16 O -0.545 6.545 17 C 0.113 3.887 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.050 0.950 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.834 16.426 10.154 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.332 5.332 6 C 0.286 3.714 7 O -0.422 6.422 8 C -0.033 4.033 9 N -0.323 5.323 10 C -0.007 4.007 11 C -0.192 4.192 12 C -0.153 4.153 13 C -0.152 4.152 14 C -0.174 4.174 15 C 0.308 3.692 16 O -0.422 6.422 17 C -0.010 4.010 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.066 0.934 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.388 15.989 10.475 23.337 hybrid contribution -0.169 -0.744 -0.844 1.137 sum 13.219 15.245 9.631 22.359 Atomic orbital electron populations 1.21667 0.94319 1.03197 1.00352 1.21771 0.96438 0.98674 0.95790 0.91733 1.21712 0.78614 1.01468 0.98392 1.48118 1.07143 1.59809 1.18118 1.20946 0.89593 0.78046 0.82836 1.90583 1.75195 1.45470 1.30932 1.21420 0.90926 1.02868 0.88062 1.47465 1.60289 1.10161 1.14415 1.21946 0.98261 0.79537 1.00989 1.22058 1.02012 1.00822 0.94326 1.21118 1.01323 0.96539 0.96367 1.21216 0.99622 0.94893 0.99438 1.21964 0.99288 1.01398 0.94725 1.20538 0.78176 0.85935 0.84547 1.90742 1.52618 1.16853 1.81992 1.21745 0.96052 0.99334 0.83822 1.22525 1.00607 0.98481 0.97416 1.20205 0.90741 0.87405 0.94810 0.93181 1.42489 1.78978 1.07701 1.06962 1.19201 1.37342 0.93904 0.86534 0.91275 1.24715 1.02237 0.97220 0.96580 1.69647 1.51545 1.13048 1.23681 0.86240 0.77292 0.79831 0.83088 1.21819 1.21891 1.20875 0.91038 0.93832 0.92850 0.90733 0.89941 0.86922 0.87709 0.90539 0.89864 0.88293 0.91215 0.91850 0.92343 0.91009 0.90927 0.88656 0.89463 0.91478 0.89546 0.93360 0.90702 0.78060 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.05 37.16 0.34 -1.88 16 2 C -0.11 -1.73 2.69 -90.27 -0.24 -1.97 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 2.07 5.44 -3.48 -0.02 2.05 16 5 N -0.60 -9.67 2.97 -172.50 -0.51 -10.18 16 6 C 0.50 7.93 7.76 -10.98 -0.09 7.84 16 7 O -0.54 -9.93 13.63 5.56 0.08 -9.85 16 8 C 0.09 1.17 4.22 -5.20 -0.02 1.15 16 9 N -0.59 -6.94 1.96 -174.30 -0.34 -7.28 16 10 C 0.12 0.94 5.94 -3.41 -0.02 0.92 16 11 C -0.15 -1.37 5.75 -27.10 -0.16 -1.53 16 12 C -0.12 -0.88 5.28 -27.96 -0.15 -1.03 16 13 C -0.11 -1.02 5.67 -27.32 -0.15 -1.18 16 14 C -0.13 -1.26 5.56 -27.50 -0.15 -1.41 16 15 C 0.52 7.09 6.79 -11.26 -0.08 7.02 16 16 O -0.54 -9.99 16.60 5.55 0.09 -9.90 16 17 C 0.11 1.75 6.08 -3.71 -0.02 1.73 16 18 C -0.15 -2.35 5.78 -26.61 -0.15 -2.50 16 19 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.46 3.64 -53.38 -0.19 -16.65 16 22 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 23 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 26 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.07 1.35 7.54 -51.93 -0.39 0.95 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.45 6.63 -51.93 -0.34 1.11 16 34 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 35 H 0.11 1.54 7.17 -51.93 -0.37 1.16 16 36 H 0.10 0.97 7.39 -51.93 -0.38 0.58 16 37 H 0.08 0.45 6.71 -51.93 -0.35 0.11 16 38 H 0.08 0.56 7.76 -51.93 -0.40 0.16 16 39 H 0.10 1.27 5.70 -51.93 -0.30 0.98 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.34 7.88 -51.93 -0.41 -0.07 16 43 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.88 8.13 -51.93 -0.42 0.46 16 46 H 0.09 0.59 6.78 -51.93 -0.35 0.24 16 47 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 48 H 0.09 1.63 7.74 -51.93 -0.40 1.23 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.38 9.54 5.92 -40.82 -0.24 9.30 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -32.89 392.21 -9.40 -42.29 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.79 Total: 9.86 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.33 Total: 5.55 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.32 Total: -60.66 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.17 Total: -19.75 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.89 -9.40 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036287620.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.719 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds