Wall clock time and date at job start Tue Mar 31 2020 21:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52259 * 2 1 4 4 C 1.53195 * 109.49699 * 239.91685 * 2 1 3 5 5 N 1.46919 * 108.89273 * 185.48402 * 4 2 1 6 6 C 1.34783 * 120.63144 * 233.55709 * 5 4 2 7 7 O 1.21274 * 119.99655 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99922 * 179.97438 * 6 5 4 9 9 N 1.46498 * 109.46785 * 180.02562 * 8 6 5 10 10 C 1.47193 * 119.78497 * 90.00374 * 9 8 6 11 11 C 1.52995 * 108.66394 * 251.95042 * 10 9 8 12 12 C 1.51777 * 110.87604 * 273.53928 * 11 10 9 13 13 C 1.51785 * 113.81175 * 66.99326 * 12 11 10 14 14 C 1.53062 * 110.75315 * 293.18324 * 13 12 11 15 15 C 1.33370 * 119.78407 * 269.71998 * 9 8 6 16 16 O 1.21286 * 119.89364 * 359.72670 * 15 9 8 17 17 C 1.46928 * 118.73982 * 53.53793 * 5 4 2 18 18 C 1.53191 * 108.77343 * 306.39079 * 17 5 4 19 19 C 1.53039 * 109.31416 * 54.63452 * 18 17 5 20 20 H 1.09007 * 109.45640 * 58.65727 * 19 18 17 21 21 N 1.46498 * 109.46033 * 178.62598 * 19 18 17 22 22 C 1.36938 * 120.00158 * 275.00011 * 21 19 18 23 23 H 1.08006 * 119.99904 * 0.02562 * 22 21 19 24 24 C 1.38807 * 120.00151 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00335 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00083 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47218 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47555 * 120.00086 * 26 24 22 29 29 H 1.48499 * 109.46873 * 240.00073 * 26 24 22 30 30 H 1.09005 * 109.47207 * 180.08746 * 1 2 3 31 31 H 1.09002 * 109.47201 * 300.07916 * 1 2 3 32 32 H 1.09001 * 109.47583 * 60.08531 * 1 2 3 33 33 H 1.09002 * 109.58720 * 65.62433 * 4 2 1 34 34 H 1.08996 * 109.58651 * 305.34329 * 4 2 1 35 35 H 1.09001 * 109.47385 * 300.00399 * 8 6 5 36 36 H 1.08997 * 109.47457 * 60.00250 * 8 6 5 37 37 H 1.08995 * 109.60492 * 11.70174 * 10 9 8 38 38 H 1.09001 * 109.60991 * 132.03021 * 10 9 8 39 39 H 1.08997 * 109.19457 * 33.90258 * 11 10 9 40 40 H 1.08997 * 109.19208 * 153.17999 * 11 10 9 41 41 H 1.08997 * 108.61271 * 188.11555 * 12 11 10 42 42 H 1.09007 * 108.61729 * 305.87249 * 12 11 10 43 43 H 1.09002 * 109.21986 * 53.51559 * 13 12 11 44 44 H 1.09004 * 109.22484 * 172.85410 * 13 12 11 45 45 H 1.09001 * 109.63379 * 204.62268 * 14 13 12 46 46 H 1.08995 * 109.63143 * 325.22549 * 14 13 12 47 47 H 1.08998 * 109.58787 * 66.18123 * 17 5 4 48 48 H 1.09007 * 109.58600 * 186.46436 * 17 5 4 49 49 H 1.09002 * 109.49529 * 174.58688 * 18 17 5 50 50 H 1.09005 * 109.49968 * 294.64599 * 18 17 5 51 51 H 0.97000 * 120.00318 * 95.00075 * 21 19 18 52 52 H 0.96996 * 120.00251 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5044 -0.8321 -1.1714 6 6 4.2806 -0.3909 -2.1811 7 8 3.7723 0.1015 -3.1660 8 6 5.7799 -0.5084 -2.0857 9 7 6.3908 0.0383 -3.2998 10 6 6.7513 1.4642 -3.3585 11 6 5.7728 2.1786 -4.2929 12 6 6.2415 2.0938 -5.7340 13 6 6.2129 0.6882 -6.3060 14 6 7.2422 -0.2030 -5.6066 15 6 6.6218 -0.7603 -4.3427 16 8 6.3301 -1.9359 -4.2800 17 6 4.1055 -1.4301 0.0285 18 6 3.5741 -0.6965 1.2639 19 6 2.0440 -0.7214 1.2483 20 1 1.6978 -1.7550 1.2365 21 7 1.5327 -0.0492 2.4453 22 6 1.4014 -0.7444 3.6177 23 1 1.6752 -1.7884 3.6601 24 6 0.9164 -0.1076 4.7518 25 7 0.5823 1.1644 4.7001 26 14 0.7380 -1.0559 6.3513 27 1 1.1777 -2.4594 6.1464 28 1 1.5775 -0.4216 7.3992 29 1 -0.6838 -1.0407 6.7797 30 1 -0.3634 -1.0277 0.0016 31 1 -0.3634 0.5151 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.7637 -0.1580 -2.1389 34 1 1.6033 -1.7207 -1.2993 35 1 6.1337 0.0492 -1.2185 36 1 6.0562 -1.5575 -1.9804 37 1 6.6878 1.8989 -2.3610 38 1 7.7672 1.5693 -3.7393 39 1 4.7910 1.7132 -4.2073 40 1 5.6987 3.2262 -4.0011 41 1 5.6030 2.7314 -6.3455 42 1 7.2622 2.4719 -5.7909 43 1 5.2182 0.2645 -6.1675 44 1 6.4392 0.7296 -7.3715 45 1 7.5258 -1.0226 -6.2668 46 1 8.1226 0.3862 -5.3502 47 1 3.8357 -2.4846 0.0856 48 1 5.1901 -1.3324 -0.0187 49 1 3.9369 -1.1913 2.1649 50 1 3.9218 0.3365 1.2512 51 1 1.2871 0.8885 2.4075 52 1 0.2430 1.6093 5.4925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036287621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:16 Heat of formation + Delta-G solvation = -66.350985 kcal Electronic energy + Delta-G solvation = -30941.826960 eV Core-core repulsion = 26941.017647 eV Total energy + Delta-G solvation = -4000.809313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.90831 -39.68401 -37.60806 -36.84608 -34.83157 -34.62547 -32.89847 -31.49361 -31.28512 -29.59557 -29.11053 -26.75762 -25.68094 -24.79812 -24.02972 -22.80350 -21.68158 -20.86031 -20.20659 -19.34284 -18.65253 -17.53635 -17.23094 -17.02227 -16.89644 -15.56426 -15.30093 -15.14154 -14.90937 -14.41383 -14.28279 -14.08604 -13.85203 -13.76573 -13.70381 -13.41476 -13.32930 -13.21777 -12.77391 -12.49283 -12.47250 -12.27410 -12.09747 -11.76607 -11.63484 -11.58795 -11.22968 -11.07055 -10.98770 -10.96904 -10.89374 -10.82294 -10.64702 -10.43105 -10.18761 -9.92810 -9.85888 -9.76637 -9.64226 -8.95627 -8.83733 -8.46451 -6.99754 -5.80880 -3.09569 2.40089 2.66507 2.71809 3.22948 3.39745 3.45872 3.47835 4.21857 4.45948 4.50083 4.52544 4.55009 4.56691 4.87869 4.97801 5.03209 5.04946 5.12748 5.14457 5.22580 5.26470 5.27424 5.34384 5.40939 5.48948 5.50555 5.58426 5.66887 5.67287 5.71313 5.77789 5.83315 5.93890 5.95237 6.06223 6.10015 6.15734 6.24691 6.28080 6.38352 6.41531 6.51780 6.61850 6.78800 6.90183 7.02464 7.17303 7.50518 7.66330 8.01338 8.25201 8.37409 9.49001 10.06291 10.41092 11.41658 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.002461 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.772072 B =11372.950750 C =11565.775167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.605 5.605 6 C 0.501 3.499 7 O -0.539 6.539 8 C 0.093 3.907 9 N -0.590 5.590 10 C 0.114 3.886 11 C -0.154 4.154 12 C -0.117 4.117 13 C -0.113 4.113 14 C -0.134 4.134 15 C 0.521 3.479 16 O -0.549 6.549 17 C 0.106 3.894 18 C -0.151 4.151 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.059 0.941 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.336 1.172 -19.374 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.338 5.338 6 C 0.288 3.712 7 O -0.416 6.416 8 C -0.034 4.034 9 N -0.322 5.322 10 C -0.008 4.008 11 C -0.192 4.192 12 C -0.154 4.154 13 C -0.151 4.151 14 C -0.174 4.174 15 C 0.310 3.690 16 O -0.427 6.427 17 C -0.017 4.017 18 C -0.192 4.192 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.106 0.894 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.078 0.922 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.901 0.691 -19.718 24.136 hybrid contribution -0.178 -0.064 1.207 1.221 sum 13.722 0.627 -18.512 23.052 Atomic orbital electron populations 1.21653 0.94136 1.01784 1.01795 1.21733 0.96548 0.99944 0.94621 0.91362 1.21677 0.78487 1.00767 0.99213 1.48155 1.07208 1.60375 1.18057 1.20991 0.89661 0.77842 0.82733 1.90597 1.75157 1.44834 1.31030 1.21432 0.90737 1.02852 0.88359 1.47472 1.60168 1.10192 1.14395 1.21866 0.98382 0.79337 1.01236 1.21959 1.01944 1.01020 0.94312 1.21121 1.01435 0.96494 0.96372 1.21215 0.99519 0.94915 0.99478 1.21973 0.99428 1.01389 0.94626 1.20550 0.78003 0.85888 0.84569 1.90714 1.52955 1.16876 1.82133 1.21892 0.97308 0.97688 0.84833 1.22683 1.00455 1.00299 0.95793 1.20191 0.90327 0.95736 0.86408 0.93424 1.42416 1.76635 1.11302 1.05727 1.19260 1.35845 0.94073 0.87630 0.91177 1.24729 1.02098 0.96018 0.98067 1.69665 1.50157 1.09414 1.28810 0.86158 0.77332 0.78876 0.84058 1.20579 1.21942 1.21919 0.93054 0.90762 0.93859 0.89521 0.91724 0.87447 0.86938 0.89723 0.90452 0.88376 0.90998 0.91799 0.92272 0.91083 0.90885 0.88632 0.89394 0.91270 0.90711 0.90485 0.92202 0.78241 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.03 37.16 0.34 -1.87 16 2 C -0.11 -1.76 2.46 -90.48 -0.22 -1.98 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.12 1.79 5.71 -3.71 -0.02 1.76 16 5 N -0.60 -8.42 2.97 -172.77 -0.51 -8.94 16 6 C 0.50 7.14 7.76 -10.98 -0.09 7.05 16 7 O -0.54 -9.09 13.63 5.56 0.08 -9.02 16 8 C 0.09 1.03 4.22 -5.20 -0.02 1.01 16 9 N -0.59 -6.33 1.96 -174.60 -0.34 -6.67 16 10 C 0.11 0.88 5.90 -3.67 -0.02 0.86 16 11 C -0.15 -1.33 5.74 -27.35 -0.16 -1.48 16 12 C -0.12 -0.83 5.27 -27.97 -0.15 -0.98 16 13 C -0.11 -0.92 5.67 -27.32 -0.15 -1.08 16 14 C -0.13 -1.13 5.56 -27.49 -0.15 -1.29 16 15 C 0.52 6.43 6.81 -11.25 -0.08 6.35 16 16 O -0.55 -9.04 16.59 5.55 0.09 -8.95 16 17 C 0.11 1.33 6.34 -3.71 -0.02 1.31 16 18 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 19 C 0.18 3.38 2.19 -67.88 -0.15 3.23 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -16.91 4.41 -53.37 -0.24 -17.15 16 22 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 23 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 26 Si 0.90 21.82 29.55 -169.99 -5.02 16.79 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.41 7.38 -51.93 -0.38 1.02 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.11 0.90 7.40 -51.93 -0.38 0.52 16 36 H 0.11 1.28 7.17 -51.93 -0.37 0.91 16 37 H 0.08 0.57 7.77 -51.93 -0.40 0.17 16 38 H 0.08 0.43 6.73 -51.93 -0.35 0.08 16 39 H 0.10 1.21 5.70 -51.93 -0.30 0.92 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.32 7.89 -51.93 -0.41 -0.09 16 43 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.78 8.13 -51.93 -0.42 0.35 16 46 H 0.09 0.53 6.77 -51.93 -0.35 0.18 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.74 5.93 -51.92 -0.31 0.43 16 49 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 50 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 51 H 0.38 9.75 7.52 -40.82 -0.31 9.45 16 52 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -33.24 396.18 -9.50 -42.74 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.95 Total: 8.34 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.29 Total: 3.51 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.37 Total: -59.37 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.17 Total: -17.97 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.24 -9.50 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036287621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.614 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds