Wall clock time and date at job start Tue Mar 31 2020 21:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52259 * 2 1 4 4 C 1.53195 * 109.49699 * 239.91685 * 2 1 3 5 5 N 1.46919 * 108.89273 * 185.48402 * 4 2 1 6 6 C 1.34783 * 120.63144 * 233.55709 * 5 4 2 7 7 O 1.21274 * 119.99655 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99922 * 179.97438 * 6 5 4 9 9 N 1.46498 * 109.46785 * 180.02562 * 8 6 5 10 10 C 1.47193 * 119.78497 * 90.00374 * 9 8 6 11 11 C 1.52995 * 108.66394 * 251.95042 * 10 9 8 12 12 C 1.51777 * 110.87604 * 273.53928 * 11 10 9 13 13 C 1.51785 * 113.81175 * 66.99326 * 12 11 10 14 14 C 1.53062 * 110.75315 * 293.18324 * 13 12 11 15 15 C 1.33370 * 119.78407 * 269.71998 * 9 8 6 16 16 O 1.21286 * 119.89364 * 359.72670 * 15 9 8 17 17 C 1.46928 * 118.73982 * 53.53793 * 5 4 2 18 18 C 1.53191 * 108.77343 * 306.39079 * 17 5 4 19 19 C 1.53039 * 109.31416 * 54.63452 * 18 17 5 20 20 H 1.09007 * 109.45640 * 58.65727 * 19 18 17 21 21 N 1.46498 * 109.46033 * 178.62598 * 19 18 17 22 22 C 1.36938 * 120.00158 * 275.00011 * 21 19 18 23 23 H 1.08006 * 119.99904 * 0.02562 * 22 21 19 24 24 C 1.38807 * 120.00151 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00335 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00083 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47218 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47555 * 120.00086 * 26 24 22 29 29 H 1.48499 * 109.46873 * 240.00073 * 26 24 22 30 30 H 1.09005 * 109.47207 * 180.08746 * 1 2 3 31 31 H 1.09002 * 109.47201 * 300.07916 * 1 2 3 32 32 H 1.09001 * 109.47583 * 60.08531 * 1 2 3 33 33 H 1.09002 * 109.58720 * 65.62433 * 4 2 1 34 34 H 1.08996 * 109.58651 * 305.34329 * 4 2 1 35 35 H 1.09001 * 109.47385 * 300.00399 * 8 6 5 36 36 H 1.08997 * 109.47457 * 60.00250 * 8 6 5 37 37 H 1.08995 * 109.60492 * 11.70174 * 10 9 8 38 38 H 1.09001 * 109.60991 * 132.03021 * 10 9 8 39 39 H 1.08997 * 109.19457 * 33.90258 * 11 10 9 40 40 H 1.08997 * 109.19208 * 153.17999 * 11 10 9 41 41 H 1.08997 * 108.61271 * 188.11555 * 12 11 10 42 42 H 1.09007 * 108.61729 * 305.87249 * 12 11 10 43 43 H 1.09002 * 109.21986 * 53.51559 * 13 12 11 44 44 H 1.09004 * 109.22484 * 172.85410 * 13 12 11 45 45 H 1.09001 * 109.63379 * 204.62268 * 14 13 12 46 46 H 1.08995 * 109.63143 * 325.22549 * 14 13 12 47 47 H 1.08998 * 109.58787 * 66.18123 * 17 5 4 48 48 H 1.09007 * 109.58600 * 186.46436 * 17 5 4 49 49 H 1.09002 * 109.49529 * 174.58688 * 18 17 5 50 50 H 1.09005 * 109.49968 * 294.64599 * 18 17 5 51 51 H 0.97000 * 120.00318 * 95.00075 * 21 19 18 52 52 H 0.96996 * 120.00251 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5044 -0.8321 -1.1714 6 6 4.2806 -0.3909 -2.1811 7 8 3.7723 0.1015 -3.1660 8 6 5.7799 -0.5084 -2.0857 9 7 6.3908 0.0383 -3.2998 10 6 6.7513 1.4642 -3.3585 11 6 5.7728 2.1786 -4.2929 12 6 6.2415 2.0938 -5.7340 13 6 6.2129 0.6882 -6.3060 14 6 7.2422 -0.2030 -5.6066 15 6 6.6218 -0.7603 -4.3427 16 8 6.3301 -1.9359 -4.2800 17 6 4.1055 -1.4301 0.0285 18 6 3.5741 -0.6965 1.2639 19 6 2.0440 -0.7214 1.2483 20 1 1.6978 -1.7550 1.2365 21 7 1.5327 -0.0492 2.4453 22 6 1.4014 -0.7444 3.6177 23 1 1.6752 -1.7884 3.6601 24 6 0.9164 -0.1076 4.7518 25 7 0.5823 1.1644 4.7001 26 14 0.7380 -1.0559 6.3513 27 1 1.1777 -2.4594 6.1464 28 1 1.5775 -0.4216 7.3992 29 1 -0.6838 -1.0407 6.7797 30 1 -0.3634 -1.0277 0.0016 31 1 -0.3634 0.5151 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.7637 -0.1580 -2.1389 34 1 1.6033 -1.7207 -1.2993 35 1 6.1337 0.0492 -1.2185 36 1 6.0562 -1.5575 -1.9804 37 1 6.6878 1.8989 -2.3610 38 1 7.7672 1.5693 -3.7393 39 1 4.7910 1.7132 -4.2073 40 1 5.6987 3.2262 -4.0011 41 1 5.6030 2.7314 -6.3455 42 1 7.2622 2.4719 -5.7909 43 1 5.2182 0.2645 -6.1675 44 1 6.4392 0.7296 -7.3715 45 1 7.5258 -1.0226 -6.2668 46 1 8.1226 0.3862 -5.3502 47 1 3.8357 -2.4846 0.0856 48 1 5.1901 -1.3324 -0.0187 49 1 3.9369 -1.1913 2.1649 50 1 3.9218 0.3365 1.2512 51 1 1.2871 0.8885 2.4075 52 1 0.2430 1.6093 5.4925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036287621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:15 Heat of formation + Delta-G solvation = -86.898615 kcal Electronic energy + Delta-G solvation = -30942.717972 eV Core-core repulsion = 26941.017647 eV Total energy + Delta-G solvation = -4001.700325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.85076 -40.78343 -38.92802 -37.67219 -36.16765 -35.62909 -34.46166 -33.05996 -31.99691 -31.08043 -30.20031 -27.75553 -26.91073 -26.18369 -24.84721 -24.29406 -23.08023 -21.53583 -21.39171 -20.52930 -19.60057 -19.03719 -18.43505 -18.13775 -17.81632 -16.78432 -16.61063 -16.31369 -16.01399 -15.67194 -15.48239 -15.17843 -15.15892 -14.89196 -14.59839 -14.46950 -14.39296 -14.22562 -14.07961 -13.60698 -13.57721 -13.17213 -13.14541 -13.01608 -12.92416 -12.88542 -12.76111 -12.49156 -12.35811 -12.08502 -12.05809 -11.85840 -11.72793 -11.70431 -11.59862 -11.46034 -11.15604 -11.00758 -10.85120 -10.77378 -9.74699 -9.66488 -8.95880 -7.90974 -5.18246 1.47921 1.48427 1.49465 1.57438 1.58548 1.88821 2.21182 2.58059 3.42255 3.48501 3.49912 3.77657 3.83798 3.88523 3.93002 3.96692 4.01306 4.06971 4.18922 4.26118 4.31946 4.35272 4.38856 4.48491 4.49546 4.56557 4.59268 4.64810 4.76329 4.78399 4.82682 4.84203 4.88826 4.96955 5.00480 5.03390 5.12010 5.17253 5.27646 5.29134 5.31503 5.39154 5.41978 5.50468 5.55553 5.59008 5.66119 6.30728 6.36420 6.39922 7.09570 7.18144 7.37534 8.13434 8.36667 9.32737 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.002461 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.772072 B =11372.950750 C =11565.775167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 H 0.056 0.944 4 C 0.129 3.871 5 N -0.607 5.607 6 C 0.495 3.505 7 O -0.569 6.569 8 C 0.092 3.908 9 N -0.588 5.588 10 C 0.109 3.891 11 C -0.153 4.153 12 C -0.115 4.115 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.510 3.490 16 O -0.601 6.601 17 C 0.113 3.887 18 C -0.140 4.140 19 C 0.179 3.821 20 H 0.043 0.957 21 N -0.731 5.731 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.265 1.265 28 H -0.296 1.296 29 H -0.299 1.299 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.031 0.969 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.122 0.878 47 H 0.079 0.921 48 H 0.110 0.890 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.371 0.629 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.011 0.983 -20.322 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.116 4.116 3 H 0.074 0.926 4 C 0.006 3.994 5 N -0.340 5.340 6 C 0.283 3.717 7 O -0.449 6.449 8 C -0.035 4.035 9 N -0.319 5.319 10 C -0.012 4.012 11 C -0.192 4.192 12 C -0.152 4.152 13 C -0.147 4.147 14 C -0.167 4.167 15 C 0.301 3.699 16 O -0.483 6.483 17 C -0.009 4.009 18 C -0.181 4.181 19 C 0.070 3.930 20 H 0.061 0.939 21 N -0.370 5.370 22 C -0.359 4.359 23 H 0.095 0.905 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.796 3.204 27 H -0.190 1.190 28 H -0.224 1.224 29 H -0.227 1.227 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.159 0.841 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.050 0.950 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.140 0.860 47 H 0.098 0.902 48 H 0.128 0.872 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.203 0.797 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.614 0.490 -20.691 26.540 hybrid contribution -1.045 0.006 1.405 1.751 sum 15.569 0.496 -19.286 24.791 Atomic orbital electron populations 1.21575 0.94220 1.01847 1.01175 1.21577 0.96437 0.99155 0.94453 0.92579 1.21500 0.79504 1.00759 0.97687 1.48235 1.06780 1.60375 1.18598 1.21643 0.91047 0.76890 0.82096 1.90604 1.76002 1.46073 1.32198 1.21545 0.88339 1.03642 0.89931 1.47646 1.59022 1.11317 1.13875 1.22162 0.99636 0.77342 1.02088 1.21915 1.00115 1.01356 0.95786 1.21120 1.03149 0.95723 0.95205 1.21198 0.97328 0.95294 1.00909 1.22018 1.00250 1.01780 0.92688 1.21310 0.77476 0.85410 0.85753 1.90679 1.55329 1.19164 1.83154 1.21928 0.99145 0.97420 0.82437 1.22452 0.97959 1.00379 0.97299 1.20420 0.92100 0.95080 0.85383 0.93870 1.42581 1.77061 1.10751 1.06598 1.19613 1.33573 0.94317 0.88401 0.90533 1.25463 1.03279 0.96907 1.01221 1.69817 1.52223 1.10982 1.29170 0.85173 0.76538 0.78368 0.80313 1.18952 1.22372 1.22655 0.92604 0.93892 0.91899 0.90267 0.90872 0.84142 0.86954 0.88408 0.87209 0.92554 0.89834 0.91854 0.89222 0.94986 0.88787 0.88554 0.85972 0.90230 0.87205 0.91238 0.92891 0.79740 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.03 71.98 0.65 -3.62 16 2 C -0.10 -3.12 2.46 -10.71 -0.03 -3.15 16 3 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.13 3.72 5.71 86.36 0.49 4.21 16 5 N -0.61 -16.12 2.97 -818.91 -2.44 -18.56 16 6 C 0.50 13.61 7.76 87.66 0.68 14.29 16 7 O -0.57 -19.37 13.63 -3.01 -0.04 -19.41 16 8 C 0.09 1.85 4.22 85.63 0.36 2.21 16 9 N -0.59 -11.46 1.96 -825.48 -1.62 -13.08 16 10 C 0.11 1.34 5.90 86.25 0.51 1.85 16 11 C -0.15 -2.36 5.74 30.19 0.17 -2.18 16 12 C -0.11 -1.34 5.27 29.79 0.16 -1.18 16 13 C -0.11 -1.61 5.67 30.22 0.17 -1.44 16 14 C -0.13 -1.87 5.56 30.10 0.17 -1.70 16 15 C 0.51 11.99 6.81 88.11 0.60 12.59 16 16 O -0.60 -19.83 16.59 -3.05 -0.05 -19.88 16 17 C 0.11 2.57 6.34 86.36 0.55 3.12 16 18 C -0.14 -4.25 5.66 30.67 0.17 -4.08 16 19 C 0.18 6.52 2.19 45.03 0.10 6.62 16 20 H 0.04 1.63 8.08 -2.38 -0.02 1.61 16 21 N -0.73 -34.78 4.41 -322.76 -1.42 -36.20 16 22 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 23 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 25 N -0.97 -58.32 13.06 21.65 0.28 -58.03 16 26 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 30 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.04 1.67 7.38 -2.39 -0.02 1.66 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.44 7.00 -2.39 -0.02 2.43 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.14 1.85 7.40 -2.39 -0.02 1.84 16 36 H 0.11 2.33 7.17 -2.39 -0.02 2.31 16 37 H 0.10 0.97 7.77 -2.39 -0.02 0.95 16 38 H 0.11 0.68 6.73 -2.39 -0.02 0.66 16 39 H 0.06 1.39 5.70 -2.39 -0.01 1.38 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.55 7.89 -2.38 -0.02 0.53 16 43 H 0.03 0.72 7.87 -2.39 -0.02 0.70 16 44 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.10 1.40 8.13 -2.39 -0.02 1.38 16 46 H 0.12 0.93 6.77 -2.39 -0.02 0.92 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.11 1.78 5.93 -2.38 -0.01 1.76 16 49 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 50 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 51 H 0.37 19.44 7.52 -92.71 -0.70 18.74 16 52 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.72 396.18 3.01 -72.72 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.21 Total: 32.63 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.06 Total: 12.58 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -5.20 Total: -125.87 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.09 Total: -39.30 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.72 3.01 -72.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036287621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.182 kcal (2) G-P(sol) polarization free energy of solvation -75.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds