Wall clock time and date at job start Tue Mar 31 2020 19:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53047 * 109.45944 * 2 1 4 4 C 1.53192 * 109.31306 * 178.61340 * 3 2 1 5 5 N 1.46929 * 108.77256 * 54.63896 * 4 3 2 6 6 C 1.34778 * 120.62766 * 126.36737 * 5 4 3 7 7 O 1.21345 * 120.00127 * 5.04285 * 6 5 4 8 8 C 1.49455 * 119.99670 * 185.04040 * 6 5 4 9 9 O 1.21350 * 119.99879 * 85.44794 * 8 6 5 10 10 N 1.34771 * 119.99862 * 265.44579 * 8 6 5 11 11 C 1.46927 * 120.63131 * 354.93828 * 10 8 6 12 12 C 1.53197 * 108.77396 * 233.63086 * 11 10 8 13 13 C 1.53047 * 109.31077 * 305.36303 * 12 11 10 14 14 H 1.08998 * 109.45966 * 301.35494 * 13 12 11 15 15 N 1.46501 * 109.45522 * 181.38429 * 13 12 11 16 16 C 1.36946 * 119.99705 * 85.00731 * 15 13 12 17 17 H 1.08002 * 119.99923 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99719 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00179 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99624 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47126 * 89.99878 * 20 18 16 22 22 H 1.48500 * 109.47516 * 329.99701 * 20 18 16 23 23 H 1.48499 * 109.46978 * 209.99586 * 20 18 16 24 24 C 1.53038 * 109.53621 * 61.36953 * 13 12 11 25 25 C 1.46926 * 120.63059 * 174.96063 * 10 8 6 26 26 H 1.08999 * 109.58769 * 246.15499 * 25 10 8 27 27 C 1.53004 * 109.58720 * 6.58040 * 25 10 8 28 28 C 1.46925 * 118.73951 * 306.64197 * 5 4 3 29 29 C 1.52759 * 109.00992 * 53.30849 * 28 5 4 30 30 H 1.09000 * 109.46867 * 59.99933 * 1 2 3 31 31 H 1.08996 * 109.46742 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47031 * 299.99862 * 1 2 3 33 33 H 1.09000 * 109.45088 * 119.96886 * 2 1 3 34 34 H 1.09005 * 109.49494 * 58.66342 * 3 2 1 35 35 H 1.08995 * 109.49990 * 298.57242 * 3 2 1 36 36 H 1.08996 * 109.59018 * 294.85164 * 4 3 2 37 37 H 1.08996 * 109.58313 * 174.42209 * 4 3 2 38 38 H 1.09002 * 109.58652 * 113.84410 * 11 10 8 39 39 H 1.08991 * 109.70542 * 353.48836 * 11 10 8 40 40 H 1.09000 * 109.49467 * 185.41827 * 12 11 10 41 41 H 1.08999 * 109.49784 * 65.31502 * 12 11 10 42 42 H 0.96998 * 120.00393 * 264.99945 * 15 13 12 43 43 H 0.97007 * 120.00282 * 0.02562 * 19 18 16 44 44 H 1.08996 * 109.50265 * 58.58328 * 24 13 12 45 45 H 1.09003 * 109.49436 * 178.68389 * 24 13 12 46 46 H 1.09003 * 109.46572 * 55.49860 * 27 25 10 47 47 H 1.08999 * 109.47416 * 175.49339 * 27 25 10 48 48 H 1.08995 * 109.46703 * 295.50019 * 27 25 10 49 49 H 1.09002 * 109.58799 * 173.14492 * 28 5 4 50 50 H 1.09003 * 109.58539 * 293.57290 * 28 5 4 51 51 H 1.08994 * 109.56744 * 185.55194 * 29 28 5 52 52 H 1.09002 * 109.35683 * 65.50000 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4393 0.0350 5 7 4.0679 0.6239 -1.0819 6 6 4.9614 1.1280 -1.9560 7 8 5.4326 2.2312 -1.7736 8 6 5.3718 0.3281 -3.1499 9 8 4.7065 0.3667 -4.1640 10 7 6.4808 -0.4361 -3.1002 11 6 7.3566 -0.4086 -1.9208 12 6 8.7882 -0.1089 -2.3766 13 6 9.2026 -1.1248 -3.4437 14 1 9.1326 -2.1319 -3.0329 15 7 10.5829 -0.8615 -3.8582 16 6 11.6250 -1.3864 -3.1413 17 1 11.4292 -1.9941 -2.2702 18 6 12.9328 -1.1374 -3.5343 19 7 13.1713 -0.3972 -4.5961 20 14 14.3542 -1.8528 -2.5559 21 1 14.7075 -3.1884 -3.1007 22 1 13.9563 -1.9886 -1.1317 23 1 15.5290 -0.9502 -2.6577 24 6 8.2746 -1.0025 -4.6545 25 6 6.8373 -1.3122 -4.2245 26 1 6.7657 -2.3542 -3.9128 27 6 5.8855 -1.0574 -5.3951 28 6 3.5672 -0.7493 -1.2314 29 6 2.0399 -0.7229 -1.2489 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8930 -0.5134 0.8904 34 1 1.6572 1.9641 0.8777 35 1 1.6978 1.9498 -0.9023 36 1 3.9144 1.0143 0.9783 37 1 3.9416 2.4596 -0.0646 38 1 7.3273 -1.3769 -1.4212 39 1 7.0223 0.3678 -1.2328 40 1 9.4639 -0.1806 -1.5243 41 1 8.8340 0.8968 -2.7944 42 1 10.7587 -0.3155 -4.6404 43 1 12.4332 -0.0254 -5.1039 44 1 8.3253 0.0116 -5.0508 45 1 8.5848 -1.7101 -5.4235 46 1 5.9055 0.0008 -5.6558 47 1 6.2001 -1.6493 -6.2546 48 1 4.8731 -1.3421 -5.1087 49 1 3.9347 -1.1725 -2.1662 50 1 3.9097 -1.3563 -0.3934 51 1 1.6573 -1.7434 -1.2602 52 1 1.6978 -0.1957 -2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044769551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:01 Heat of formation + Delta-G solvation = -51.430449 kcal Electronic energy + Delta-G solvation = -31066.692514 eV Core-core repulsion = 27066.530204 eV Total energy + Delta-G solvation = -4000.162310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.31814 -39.70572 -38.04461 -37.47488 -34.83579 -34.37374 -32.80574 -32.15308 -31.63297 -29.27680 -28.80322 -27.14105 -25.45920 -24.09007 -23.81637 -23.09273 -22.92512 -21.50492 -20.60370 -19.97878 -18.85353 -17.83422 -17.33188 -16.82371 -16.51275 -15.57826 -15.32193 -15.19578 -15.01258 -14.71285 -14.67840 -14.18565 -14.12415 -14.01076 -13.70075 -13.55845 -13.51185 -13.25048 -13.06077 -12.81460 -12.34821 -12.32400 -12.26247 -12.18985 -11.76836 -11.68500 -11.53157 -11.39995 -11.08899 -10.92090 -10.88713 -10.84881 -10.83893 -10.58433 -10.46562 -10.12101 -10.02712 -9.23201 -9.10834 -9.06809 -8.94070 -8.65093 -7.07650 -6.12253 -3.12977 2.00293 2.02316 2.44430 3.13982 3.49669 3.54549 3.68612 3.98166 4.23318 4.31945 4.36084 4.62041 4.62919 4.80563 4.87139 4.92342 4.99330 5.01493 5.09982 5.16877 5.20883 5.21469 5.32051 5.32921 5.34093 5.44320 5.45728 5.51388 5.58587 5.59467 5.66470 5.67126 5.74764 5.76498 5.86615 5.96360 5.97999 6.06578 6.09185 6.18761 6.27276 6.33472 6.38659 6.59565 6.75655 6.83975 6.92988 7.17745 7.61918 7.77613 7.80498 8.73278 9.19605 10.06133 10.21047 11.35990 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.002584 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.961690 B =10833.851640 C =11377.150160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.130 4.130 4 C 0.109 3.891 5 N -0.598 5.598 6 C 0.516 3.484 7 O -0.513 6.513 8 C 0.516 3.484 9 O -0.512 6.512 10 N -0.585 5.585 11 C 0.106 3.894 12 C -0.149 4.149 13 C 0.185 3.815 14 H 0.050 0.950 15 N -0.735 5.735 16 C -0.332 4.332 17 H 0.065 0.935 18 C -0.045 4.045 19 N -0.943 5.943 20 Si 1.082 2.918 21 H -0.295 1.295 22 H -0.295 1.295 23 H -0.288 1.288 24 C -0.138 4.138 25 C 0.146 3.854 26 H 0.079 0.921 27 C -0.138 4.138 28 C 0.107 3.893 29 C -0.131 4.131 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.367 0.633 43 H 0.256 0.744 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.079 0.921 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.309 -2.427 9.966 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.169 4.169 4 C -0.013 4.013 5 N -0.333 5.333 6 C 0.299 3.701 7 O -0.387 6.387 8 C 0.298 3.702 9 O -0.388 6.388 10 N -0.319 5.319 11 C -0.017 4.017 12 C -0.191 4.191 13 C 0.075 3.925 14 H 0.068 0.932 15 N -0.376 5.376 16 C -0.463 4.463 17 H 0.083 0.917 18 C -0.243 4.243 19 N -0.588 5.588 20 Si 0.913 3.087 21 H -0.223 1.223 22 H -0.222 1.222 23 H -0.214 1.214 24 C -0.177 4.177 25 C 0.044 3.956 26 H 0.097 0.903 27 C -0.195 4.195 28 C -0.016 4.016 29 C -0.169 4.169 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.200 0.800 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.095 0.905 51 H 0.097 0.903 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.719 -2.052 9.798 26.669 hybrid contribution -1.573 0.328 -0.185 1.617 sum -26.292 -1.725 9.613 28.047 Atomic orbital electron populations 1.21817 0.94772 1.01867 1.01937 1.21142 0.95971 0.95834 0.98230 1.22009 0.94779 0.96978 1.03086 1.21706 0.93951 0.97219 0.88392 1.48126 1.42945 1.14758 1.27519 1.20571 0.79615 0.87295 0.82634 1.90812 1.54282 1.20258 1.73315 1.20124 0.81906 0.79608 0.88513 1.90863 1.55075 1.62701 1.30162 1.48312 1.23146 1.41202 1.19276 1.21933 0.91608 1.01980 0.86166 1.22660 0.92756 1.01771 1.01873 1.20096 0.84993 0.95939 0.91498 0.93204 1.42438 0.99971 1.61967 1.33257 1.20044 0.87778 1.28999 1.09504 0.91707 1.25775 0.98185 1.00354 0.99950 1.70842 1.33769 1.35831 1.18357 0.83203 0.75658 0.75624 0.74193 1.22313 1.22163 1.21396 1.22339 0.92995 1.02671 0.99675 1.21453 0.95473 0.92757 0.85926 0.90337 1.22235 0.98383 1.03072 0.95821 1.21723 0.94967 0.82020 1.02908 1.21919 0.94461 1.01596 0.98912 0.92603 0.92525 0.92552 0.90798 0.90369 0.91277 0.90815 0.88676 0.90835 0.90619 0.90298 0.92006 0.79962 0.93287 0.91672 0.90357 0.90946 0.93263 0.91408 0.89836 0.90475 0.90282 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 2 C -0.09 -0.53 2.68 -90.57 -0.24 -0.77 16 3 C -0.13 -0.86 5.36 -26.61 -0.14 -1.00 16 4 C 0.11 0.93 6.42 -3.71 -0.02 0.90 16 5 N -0.60 -6.25 2.98 -173.54 -0.52 -6.77 16 6 C 0.52 7.37 5.60 -11.58 -0.06 7.31 16 7 O -0.51 -8.95 16.34 5.50 0.09 -8.86 16 8 C 0.52 7.69 5.38 -11.59 -0.06 7.63 16 9 O -0.51 -8.42 12.50 5.50 0.07 -8.35 16 10 N -0.58 -8.22 2.97 -165.72 -0.49 -8.71 16 11 C 0.11 1.46 6.32 -3.71 -0.02 1.44 16 12 C -0.15 -2.63 5.66 -26.61 -0.15 -2.78 16 13 C 0.19 3.54 2.73 -67.89 -0.19 3.36 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 N -0.73 -18.05 5.12 -53.38 -0.27 -18.32 16 16 C -0.33 -9.13 9.93 -15.05 -0.15 -9.28 16 17 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 18 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 19 N -0.94 -29.14 13.70 55.49 0.76 -28.38 16 20 Si 1.08 25.75 29.92 -169.99 -5.09 20.66 16 21 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.14 -2.26 4.84 -26.61 -0.13 -2.39 16 25 C 0.15 2.02 3.49 -67.60 -0.24 1.78 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 C -0.14 -1.86 7.59 37.16 0.28 -1.58 16 28 C 0.11 0.85 6.33 -3.93 -0.02 0.83 16 29 C -0.13 -0.86 5.34 -26.83 -0.14 -1.00 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.96 7.04 -51.93 -0.37 0.59 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.04 6.24 -51.93 -0.32 0.71 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.37 9.47 6.63 -40.82 -0.27 9.20 16 43 H 0.26 7.81 6.78 -40.82 -0.28 7.54 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.14 6.72 -51.93 -0.35 0.79 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.90 6.78 -51.93 -0.35 0.55 16 49 H 0.08 0.76 6.31 -51.93 -0.33 0.43 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -33.52 398.03 -9.58 -43.10 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -9.08 Total: 6.98 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.05 Total: 2.65 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.52 Total: -62.18 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.16 Total: -17.21 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.09 Total: 20.66 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.52 -9.58 -43.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.332 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds