Wall clock time and date at job start Tue Mar 31 2020 19:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53041 * 109.45879 * 2 1 4 4 C 1.53193 * 109.30804 * 181.38962 * 3 2 1 5 5 N 1.46926 * 108.77314 * 305.35941 * 4 3 2 6 6 C 1.34777 * 120.63246 * 233.58805 * 5 4 3 7 7 O 1.21351 * 119.99728 * 6.91371 * 6 5 4 8 8 C 1.49449 * 120.00078 * 186.90554 * 6 5 4 9 9 O 1.21340 * 120.00032 * 7.11252 * 8 6 5 10 10 N 1.34780 * 119.99981 * 187.10339 * 8 6 5 11 11 C 1.46924 * 120.62960 * 356.80937 * 10 8 6 12 12 C 1.53196 * 108.77382 * 126.40944 * 11 10 8 13 13 C 1.53036 * 109.31172 * 54.63854 * 12 11 10 14 14 H 1.08999 * 109.46540 * 178.62294 * 13 12 11 15 15 N 1.46505 * 109.46552 * 58.65165 * 13 12 11 16 16 C 1.36938 * 119.99960 * 84.96898 * 15 13 12 17 17 H 1.07999 * 119.99951 * 359.73518 * 16 15 13 18 18 C 1.38810 * 120.00078 * 180.02562 * 16 15 13 19 19 N 1.31617 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00215 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46976 * 59.99484 * 20 18 16 22 22 H 1.48497 * 109.47326 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46796 * 299.99955 * 20 18 16 24 24 C 1.53047 * 109.52682 * 298.63946 * 13 12 11 25 25 C 1.46924 * 120.63156 * 176.83233 * 10 8 6 26 26 H 1.08999 * 109.58775 * 113.65809 * 25 10 8 27 27 C 1.52998 * 109.58366 * 353.37422 * 25 10 8 28 28 C 1.46923 * 118.74010 * 53.86350 * 5 4 3 29 29 C 1.53033 * 109.45761 * 120.06711 * 2 1 3 30 30 H 1.09003 * 109.46864 * 60.00269 * 1 2 3 31 31 H 1.09000 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46854 * 300.00217 * 1 2 3 33 33 H 1.08997 * 109.44374 * 240.03279 * 2 1 3 34 34 H 1.09002 * 109.49880 * 61.43326 * 3 2 1 35 35 H 1.09004 * 109.52012 * 301.35296 * 3 2 1 36 36 H 1.09009 * 109.58098 * 185.58025 * 4 3 2 37 37 H 1.08997 * 109.58920 * 65.15292 * 4 3 2 38 38 H 1.09001 * 109.59130 * 6.62235 * 11 10 8 39 39 H 1.09000 * 109.59261 * 246.19938 * 11 10 8 40 40 H 1.08994 * 109.50074 * 294.67834 * 12 11 10 41 41 H 1.09007 * 109.52206 * 174.59820 * 12 11 10 42 42 H 0.97003 * 119.99910 * 264.98133 * 15 13 12 43 43 H 0.97002 * 120.00503 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.49642 * 181.30968 * 24 13 12 45 45 H 1.08998 * 109.49432 * 301.40683 * 24 13 12 46 46 H 1.08996 * 109.47334 * 66.15188 * 27 25 10 47 47 H 1.09007 * 109.47299 * 186.15075 * 27 25 10 48 48 H 1.09002 * 109.47585 * 306.14911 * 27 25 10 49 49 H 1.09008 * 109.58075 * 65.92514 * 28 5 4 50 50 H 1.08996 * 109.58885 * 186.35006 * 28 5 4 51 51 H 1.09000 * 109.50243 * 298.56521 * 29 2 1 52 52 H 1.08998 * 109.50313 * 58.63028 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4391 -0.0351 5 7 4.0679 0.6237 1.0818 6 6 4.9622 1.1274 1.9554 7 8 5.2703 2.2998 1.9000 8 6 5.5741 0.2420 2.9923 9 8 5.3668 -0.9533 2.9684 10 7 6.3565 0.7713 3.9537 11 6 6.6736 2.2059 3.9554 12 6 6.3064 2.7904 5.3230 13 6 7.0103 1.9899 6.4210 14 1 6.7702 2.4189 7.3939 15 7 8.4591 2.0405 6.2096 16 6 9.1854 3.0954 6.6944 17 1 8.6895 3.8921 7.2289 18 6 10.5580 3.1436 6.4936 19 7 11.1616 2.1751 5.8377 20 14 11.5489 4.5822 7.1555 21 1 11.3996 4.6486 8.6315 22 1 12.9815 4.3967 6.8112 23 1 11.0533 5.8445 6.5506 24 6 6.5389 0.5346 6.3752 25 6 6.9088 -0.0755 5.0198 26 1 7.9933 -0.1247 4.9225 27 6 6.3198 -1.4836 4.9133 28 6 3.5756 -0.7532 1.2248 29 6 2.0399 -0.7229 1.2488 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8929 -0.5134 -0.8904 34 1 1.6978 1.9497 0.9024 35 1 1.6572 1.9645 -0.8774 36 1 3.9417 2.4595 0.0646 37 1 3.9143 1.0142 -0.9784 38 1 6.0990 2.7081 3.1771 39 1 7.7392 2.3448 3.7727 40 1 5.2274 2.7328 5.4654 41 1 6.6246 3.8319 5.3713 42 1 8.9039 1.3268 5.7261 43 1 12.1208 2.2089 5.6971 44 1 7.0229 -0.0298 7.1721 45 1 5.4576 0.4981 6.5078 46 1 6.6635 -1.9524 3.9913 47 1 6.6448 -2.0789 5.7666 48 1 5.2315 -1.4227 4.9062 49 1 3.9189 -1.3532 0.3820 50 1 3.9487 -1.1798 2.1558 51 1 1.6978 -0.1959 2.1395 52 1 1.6568 -1.7433 1.2604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044769552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:06 Heat of formation + Delta-G solvation = -18.136535 kcal Electronic energy + Delta-G solvation = -31469.341276 eV Core-core repulsion = 27470.622699 eV Total energy + Delta-G solvation = -3998.718577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.24317 -39.47044 -37.98368 -37.54648 -34.58817 -33.80984 -32.33121 -31.92871 -31.30908 -29.14070 -28.71864 -27.09341 -25.29362 -24.05331 -23.57741 -23.34873 -22.73104 -21.49392 -20.48530 -19.52205 -18.53317 -17.21978 -17.09242 -16.64418 -15.99694 -15.82018 -15.17810 -15.02077 -14.77973 -14.63540 -14.48688 -14.11121 -13.93469 -13.74536 -13.70519 -13.33241 -13.25657 -13.16830 -12.78107 -12.50134 -12.19992 -12.13471 -12.06325 -11.99783 -11.63138 -11.48634 -11.27388 -11.18262 -10.97840 -10.84841 -10.79555 -10.70456 -10.69716 -10.53518 -10.23044 -9.92432 -9.62542 -9.59468 -8.92737 -8.88496 -8.34560 -8.22322 -6.95115 -5.76000 -3.04589 1.50174 2.34838 3.27765 3.44682 3.47871 3.49542 3.50122 4.24056 4.44877 4.48331 4.53690 4.60259 4.83896 5.03375 5.11489 5.20786 5.24747 5.28004 5.33351 5.34287 5.42842 5.50185 5.56048 5.62945 5.63280 5.65640 5.72008 5.74687 5.81589 5.83070 5.86251 5.92767 5.97064 6.01890 6.11700 6.15653 6.17409 6.28126 6.42633 6.53496 6.55919 6.61952 6.73434 6.80964 6.90323 7.05323 7.06822 7.59791 7.70904 7.84530 8.14886 8.42546 9.53741 10.10515 10.45393 11.46573 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.002818 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.619786 B = 9933.743238 C =10515.780727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.128 4.128 4 C 0.105 3.895 5 N -0.582 5.582 6 C 0.508 3.492 7 O -0.509 6.509 8 C 0.504 3.496 9 O -0.524 6.524 10 N -0.552 5.552 11 C 0.053 3.947 12 C -0.145 4.145 13 C 0.170 3.830 14 H 0.050 0.950 15 N -0.721 5.721 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.131 4.131 25 C 0.138 3.862 26 H 0.086 0.914 27 C -0.137 4.137 28 C 0.063 3.937 29 C -0.129 4.129 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.146 0.854 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.045 0.955 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.149 0.851 51 H 0.065 0.935 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.716 -6.745 -11.297 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.166 4.166 4 C -0.017 4.017 5 N -0.315 5.315 6 C 0.293 3.707 7 O -0.386 6.386 8 C 0.287 3.713 9 O -0.405 6.405 10 N -0.283 5.283 11 C -0.068 4.068 12 C -0.186 4.186 13 C 0.060 3.940 14 H 0.068 0.932 15 N -0.364 5.364 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.170 4.170 25 C 0.036 3.964 26 H 0.104 0.896 27 C -0.194 4.194 28 C -0.058 4.058 29 C -0.167 4.167 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.162 0.838 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.166 0.834 51 H 0.083 0.917 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.542 -6.577 -11.225 24.315 hybrid contribution 0.811 0.707 0.141 1.085 sum -19.731 -5.869 -11.084 23.380 Atomic orbital electron populations 1.21827 0.95069 1.01725 1.01757 1.21175 0.95690 0.95906 0.98666 1.21968 0.94808 0.96952 1.02850 1.21732 0.94092 0.97316 0.88548 1.47991 1.41313 1.15208 1.26966 1.20505 0.79934 0.87662 0.82630 1.90330 1.61021 1.16975 1.70269 1.19861 0.80829 0.87727 0.82906 1.90465 1.60888 1.14956 1.74169 1.48222 1.44977 1.11231 1.23846 1.23307 1.04312 0.77810 1.01323 1.22468 0.98460 1.01281 0.96374 1.20248 0.85944 0.91872 0.95927 0.93195 1.42477 1.00532 1.26292 1.67054 1.19187 0.89628 0.99512 1.28568 0.91263 1.24716 0.96661 0.98305 1.01182 1.69638 1.09354 1.33124 1.46077 0.86289 0.79330 0.82170 0.78510 1.21366 1.21793 1.21313 1.22227 1.00502 0.98250 0.96028 1.21472 0.98751 0.90069 0.86135 0.89585 1.22233 1.01372 0.94267 1.01509 1.23127 0.93596 0.81375 1.07746 1.22084 0.95639 1.00978 0.98020 0.92735 0.92629 0.92700 0.91062 0.91368 0.90665 0.88663 0.91148 0.83778 0.90022 0.93680 0.90820 0.78235 0.93488 0.90525 0.92081 0.90726 0.93582 0.91906 0.91621 0.83429 0.91656 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.10 -0.68 2.68 -90.58 -0.24 -0.92 16 3 C -0.13 -0.98 5.36 -26.61 -0.14 -1.12 16 4 C 0.11 1.01 6.44 -3.71 -0.02 0.98 16 5 N -0.58 -6.81 2.97 -173.01 -0.51 -7.33 16 6 C 0.51 7.47 7.67 -11.59 -0.09 7.38 16 7 O -0.51 -8.40 12.44 5.50 0.07 -8.34 16 8 C 0.50 7.86 7.48 -11.58 -0.09 7.77 16 9 O -0.52 -7.94 8.64 5.51 0.05 -7.89 16 10 N -0.55 -9.27 2.97 -165.74 -0.49 -9.77 16 11 C 0.05 0.96 5.99 -3.71 -0.02 0.93 16 12 C -0.14 -2.62 5.78 -26.61 -0.15 -2.77 16 13 C 0.17 3.32 3.10 -67.88 -0.21 3.11 16 14 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 15 N -0.72 -17.38 4.31 -53.38 -0.23 -17.61 16 16 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 C -0.13 -2.17 5.07 -26.62 -0.13 -2.31 16 25 C 0.14 2.30 3.19 -67.61 -0.22 2.09 16 26 H 0.09 1.64 6.65 -51.93 -0.35 1.30 16 27 C -0.14 -2.00 7.60 37.16 0.28 -1.72 16 28 C 0.06 0.63 6.06 -3.49 -0.02 0.61 16 29 C -0.13 -1.04 5.38 -26.39 -0.14 -1.19 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.02 7.00 -51.92 -0.36 0.65 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.15 2.60 3.75 -57.07 -0.21 2.39 16 39 H 0.08 1.74 7.74 -51.93 -0.40 1.34 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.38 9.82 6.07 -40.82 -0.25 9.58 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.07 1.15 6.64 -51.93 -0.34 0.80 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.91 6.86 -51.93 -0.36 0.55 16 49 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 50 H 0.15 1.76 4.20 -55.36 -0.23 1.53 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -29.51 386.90 -9.51 -39.02 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -8.81 Total: 10.63 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.11 Total: 5.26 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.51 Total: -61.80 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.12 Total: -16.22 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.51 -9.51 -39.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.884 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds