Wall clock time and date at job start Tue Mar 31 2020 19:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53041 * 109.46129 * 2 1 4 4 C 1.53193 * 109.31621 * 178.61775 * 3 2 1 5 5 N 1.46926 * 108.89241 * 54.56092 * 4 3 2 6 6 C 1.34780 * 120.62643 * 126.47143 * 5 4 3 7 7 O 1.21344 * 120.00071 * 354.94019 * 6 5 4 8 8 C 1.49451 * 119.99691 * 174.94596 * 6 5 4 9 9 O 1.21352 * 120.00078 * 85.40231 * 8 6 5 10 10 N 1.34772 * 119.99774 * 265.40486 * 8 6 5 11 11 C 1.46924 * 120.63286 * 5.06251 * 10 8 6 12 12 C 1.53188 * 108.77533 * 126.37199 * 11 10 8 13 13 C 1.53043 * 109.31340 * 54.63462 * 12 11 10 14 14 H 1.08997 * 109.45871 * 58.64324 * 13 12 11 15 15 N 1.46509 * 109.45843 * 178.61463 * 13 12 11 16 16 C 1.36932 * 119.99742 * 274.99990 * 15 13 12 17 17 H 1.08001 * 120.00566 * 0.02562 * 16 15 13 18 18 C 1.38820 * 119.99763 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99699 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46684 * 120.00320 * 20 18 16 23 23 H 1.48492 * 109.47189 * 240.00271 * 20 18 16 24 24 C 1.53038 * 109.53804 * 298.63630 * 13 12 11 25 25 C 1.46932 * 120.63040 * 184.78524 * 10 8 6 26 26 H 1.08998 * 109.58237 * 353.42144 * 25 10 8 27 27 C 1.53004 * 109.58512 * 113.84011 * 25 10 8 28 28 C 1.46961 * 118.71457 * 306.64321 * 5 4 3 29 29 C 1.53041 * 109.46054 * 239.93137 * 2 1 3 30 30 H 1.08995 * 109.47243 * 60.00228 * 1 2 3 31 31 H 1.09003 * 109.46621 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46670 * 299.99614 * 1 2 3 33 33 H 1.08999 * 109.45382 * 119.96553 * 2 1 3 34 34 H 1.09000 * 109.49569 * 58.66248 * 3 2 1 35 35 H 1.09007 * 109.49667 * 298.56876 * 3 2 1 36 36 H 1.08997 * 109.58266 * 174.42381 * 4 3 2 37 37 H 1.09001 * 109.58082 * 294.70423 * 4 3 2 38 38 H 1.09001 * 109.58985 * 246.15494 * 11 10 8 39 39 H 1.08999 * 109.58479 * 6.43962 * 11 10 8 40 40 H 1.09005 * 109.50030 * 174.58745 * 12 11 10 41 41 H 1.09002 * 109.50107 * 294.64988 * 12 11 10 42 42 H 0.96996 * 119.99530 * 95.00476 * 15 13 12 43 43 H 0.97004 * 119.99943 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.49605 * 181.31872 * 24 13 12 45 45 H 1.09002 * 109.49702 * 301.37655 * 24 13 12 46 46 H 1.09003 * 109.47082 * 60.00479 * 27 25 10 47 47 H 1.09000 * 109.47150 * 180.02562 * 27 25 10 48 48 H 1.09003 * 109.47171 * 299.99910 * 27 25 10 49 49 H 1.09000 * 109.46875 * 293.57273 * 28 5 4 50 50 H 1.09004 * 109.70768 * 173.29110 * 28 5 4 51 51 H 1.08994 * 109.49806 * 301.33313 * 29 2 1 52 52 H 1.09005 * 109.49785 * 61.40063 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4392 0.0349 5 7 4.0707 0.6230 -1.0801 6 6 4.9666 1.1263 -1.9522 7 8 5.2992 2.2907 -1.8761 8 6 5.5502 0.2502 -3.0131 9 8 4.9620 0.0947 -4.0631 10 7 6.7297 -0.3673 -2.8035 11 6 7.3997 -0.2788 -1.4989 12 6 7.7022 -1.6962 -1.0028 13 6 8.5020 -2.4462 -2.0706 14 1 9.4257 -1.9061 -2.2785 15 7 8.8217 -3.7913 -1.5858 16 6 9.9274 -3.9923 -0.8036 17 1 10.5637 -3.1593 -0.5435 18 6 10.2306 -5.2669 -0.3447 19 7 9.4554 -6.2822 -0.6621 20 14 11.7394 -5.5414 0.7218 21 1 12.4387 -4.2483 0.9321 22 1 11.3231 -6.0978 2.0343 23 1 12.6553 -6.4960 0.0475 24 6 7.6727 -2.5498 -3.3526 25 6 7.3671 -1.1468 -3.8735 26 1 6.6931 -1.2143 -4.7275 27 6 8.6702 -0.4661 -4.2974 28 6 3.5714 -0.7513 -1.2280 29 6 2.0399 -0.7230 -1.2488 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8930 -0.5133 0.8904 34 1 1.6573 1.9640 0.8776 35 1 1.6978 1.9497 -0.9025 36 1 3.9416 2.4596 -0.0647 37 1 3.9143 1.0166 0.9793 38 1 8.3308 0.2783 -1.6033 39 1 6.7482 0.2285 -0.7873 40 1 8.2842 -1.6432 -0.0827 41 1 6.7669 -2.2223 -0.8118 42 1 8.2500 -4.5394 -1.8192 43 1 9.6674 -7.1729 -0.3417 44 1 8.2336 -3.1044 -4.1048 45 1 6.7379 -3.0686 -3.1402 46 1 9.3436 -0.4062 -3.4425 47 1 9.1412 -1.0456 -5.0915 48 1 8.4538 0.5385 -4.6607 49 1 3.9143 -1.3548 -0.3876 50 1 3.9417 -1.1786 -2.1599 51 1 1.6573 -1.7435 -1.2600 52 1 1.6973 -0.1962 -2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044769553.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:10 Heat of formation + Delta-G solvation = -66.929289 kcal Electronic energy + Delta-G solvation = -31259.926033 eV Core-core repulsion = 27259.091644 eV Total energy + Delta-G solvation = -4000.834390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.18150 -39.56602 -38.05432 -37.48420 -34.65910 -34.29380 -32.58044 -31.90819 -31.50434 -29.49608 -28.76902 -27.37184 -25.58324 -24.17001 -23.71629 -23.09032 -22.89879 -21.45328 -20.68887 -19.57024 -18.56307 -17.84874 -17.10665 -17.03555 -16.47818 -15.30028 -15.24063 -14.98155 -14.95261 -14.70279 -14.47675 -14.09566 -14.01473 -13.87501 -13.68048 -13.55292 -13.39530 -13.14801 -12.89213 -12.82169 -12.56389 -12.23036 -12.20213 -11.90629 -11.82998 -11.60030 -11.43635 -11.27854 -11.23415 -10.99872 -10.93896 -10.83436 -10.77988 -10.73553 -10.54468 -10.21707 -9.81653 -9.69607 -9.53433 -9.01972 -8.96764 -8.71107 -7.04353 -5.83481 -3.12846 2.01172 2.07516 2.52416 3.19941 3.38382 3.44508 3.46506 4.03383 4.36568 4.42632 4.47315 4.52154 4.73059 4.90138 4.95434 5.01176 5.06034 5.14772 5.15645 5.23210 5.29180 5.30688 5.37151 5.43573 5.47492 5.52030 5.54439 5.55833 5.62719 5.65670 5.68242 5.73970 5.77915 5.82038 5.85469 5.98447 6.07774 6.11686 6.14583 6.21244 6.28124 6.35989 6.42437 6.49709 6.79379 6.90899 6.94907 7.20997 7.63778 7.64719 7.81388 8.34568 9.46287 10.02763 10.37493 11.38943 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.003136 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.980332 B = 8926.306650 C =10038.119078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.129 4.129 4 C 0.108 3.892 5 N -0.596 5.596 6 C 0.522 3.478 7 O -0.518 6.518 8 C 0.516 3.484 9 O -0.524 6.524 10 N -0.581 5.581 11 C 0.106 3.894 12 C -0.148 4.148 13 C 0.178 3.822 14 H 0.053 0.947 15 N -0.723 5.723 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.133 4.133 25 C 0.140 3.860 26 H 0.099 0.901 27 C -0.162 4.162 28 C 0.103 3.897 29 C -0.129 4.129 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.799 13.541 0.010 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.167 4.167 4 C -0.014 4.014 5 N -0.331 5.331 6 C 0.305 3.695 7 O -0.392 6.392 8 C 0.298 3.702 9 O -0.400 6.400 10 N -0.315 5.315 11 C -0.017 4.017 12 C -0.189 4.189 13 C 0.068 3.932 14 H 0.071 0.929 15 N -0.363 5.363 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.172 4.172 25 C 0.037 3.963 26 H 0.117 0.883 27 C -0.220 4.220 28 C -0.019 4.019 29 C -0.167 4.167 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.098 0.902 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.736 14.078 -0.417 20.384 hybrid contribution 0.588 -0.524 0.683 1.042 sum -14.148 13.554 0.265 19.595 Atomic orbital electron populations 1.21814 0.94810 1.01918 1.01811 1.21154 0.95942 0.95784 0.98418 1.21989 0.94735 0.97025 1.02967 1.21715 0.94140 0.97103 0.88395 1.48138 1.42412 1.14974 1.27622 1.20344 0.79833 0.88143 0.81227 1.90777 1.61300 1.16325 1.70821 1.20116 0.81976 0.79951 0.88127 1.90783 1.60734 1.61633 1.26870 1.48295 1.20251 1.48556 1.14349 1.21925 0.97648 0.99559 0.82586 1.22687 1.01754 0.92884 1.01624 1.20201 0.94866 0.88183 0.89945 0.92907 1.42424 1.30287 1.03112 1.60480 1.19262 1.01542 0.93284 1.23029 0.91118 1.24744 0.99047 0.95758 1.01267 1.69668 1.39166 0.99309 1.49781 0.86152 0.82559 0.77671 0.80007 1.20536 1.21887 1.21860 1.22145 1.01171 0.94430 0.99430 1.21250 0.94625 0.90741 0.89658 0.88336 1.22166 0.97007 1.00587 1.02265 1.21874 0.94909 0.81715 1.03436 1.21968 0.94335 1.01676 0.98690 0.92680 0.92467 0.92596 0.90671 0.90429 0.91345 0.88712 0.90691 0.90754 0.91070 0.90332 0.92097 0.78251 0.93525 0.90118 0.91708 0.91437 0.90958 0.92679 0.90239 0.89513 0.90152 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.09 -0.67 2.68 -90.58 -0.24 -0.91 16 3 C -0.13 -0.96 5.36 -26.61 -0.14 -1.11 16 4 C 0.11 0.99 6.44 -3.71 -0.02 0.97 16 5 N -0.60 -6.83 2.98 -173.25 -0.52 -7.34 16 6 C 0.52 7.61 5.49 -11.58 -0.06 7.55 16 7 O -0.52 -8.75 16.51 5.50 0.09 -8.66 16 8 C 0.52 7.96 5.61 -11.59 -0.07 7.90 16 9 O -0.52 -9.24 16.31 5.49 0.09 -9.15 16 10 N -0.58 -8.26 2.68 -165.98 -0.45 -8.71 16 11 C 0.11 1.43 5.92 -3.71 -0.02 1.41 16 12 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 13 C 0.18 3.19 2.53 -67.88 -0.17 3.02 16 14 H 0.05 0.97 6.43 -51.93 -0.33 0.63 16 15 N -0.72 -16.83 5.12 -53.38 -0.27 -17.10 16 16 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 20 Si 0.90 21.61 29.55 -169.99 -5.02 16.59 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C -0.13 -2.05 4.99 -26.84 -0.13 -2.18 16 25 C 0.14 1.95 3.20 -67.82 -0.22 1.73 16 26 H 0.10 1.42 7.00 -51.93 -0.36 1.05 16 27 C -0.16 -2.04 9.02 37.16 0.34 -1.70 16 28 C 0.10 1.04 6.31 -3.69 -0.02 1.02 16 29 C -0.13 -1.07 5.36 -26.61 -0.14 -1.21 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.09 0.97 7.00 -51.93 -0.36 0.61 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.97 7.52 -51.93 -0.39 0.58 16 39 H 0.07 0.92 6.37 -51.93 -0.33 0.58 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.38 9.63 7.80 -40.82 -0.32 9.31 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.87 5.74 -51.93 -0.30 0.57 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.09 1.02 6.25 -51.93 -0.32 0.69 16 51 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -31.42 401.23 -9.31 -40.73 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -9.03 Total: 7.42 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -0.97 Total: 6.55 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.51 Total: -59.52 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.18 Total: -17.81 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.42 -9.31 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769553.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.203 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds