Wall clock time and date at job start Tue Mar 31 2020 19:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53042 * 109.45759 * 2 1 4 4 C 1.53188 * 109.31217 * 178.61246 * 3 2 1 5 5 N 1.46924 * 108.77515 * 54.63215 * 4 3 2 6 6 C 1.34779 * 120.63124 * 126.37275 * 5 4 3 7 7 O 1.21350 * 119.99540 * 354.90536 * 6 5 4 8 8 C 1.49447 * 120.00120 * 174.90932 * 6 5 4 9 9 O 1.21348 * 119.99943 * 85.59215 * 8 6 5 10 10 N 1.34777 * 120.00013 * 265.31294 * 8 6 5 11 11 C 1.46929 * 120.62863 * 354.82256 * 10 8 6 12 12 C 1.53188 * 108.77650 * 126.36670 * 11 10 8 13 13 C 1.53039 * 109.31439 * 54.62956 * 12 11 10 14 14 H 1.09001 * 109.45722 * 58.64535 * 13 12 11 15 15 N 1.46496 * 109.46052 * 178.61380 * 13 12 11 16 16 C 1.36938 * 120.00216 * 275.00040 * 15 13 12 17 17 H 1.07997 * 119.99855 * 0.02562 * 16 15 13 18 18 C 1.38815 * 120.00095 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99893 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47544 * 89.99764 * 20 18 16 22 22 H 1.48497 * 109.47161 * 210.00275 * 20 18 16 23 23 H 1.48508 * 109.46860 * 329.99814 * 20 18 16 24 24 C 1.53042 * 109.53934 * 298.63909 * 13 12 11 25 25 C 1.46925 * 120.62943 * 174.53550 * 10 8 6 26 26 H 1.09000 * 109.58318 * 113.84606 * 25 10 8 27 27 C 1.53000 * 109.58605 * 353.42089 * 25 10 8 28 28 C 1.46930 * 118.74045 * 306.64192 * 5 4 3 29 29 C 1.52762 * 109.00304 * 53.31206 * 28 5 4 30 30 H 1.09004 * 109.47014 * 60.00770 * 1 2 3 31 31 H 1.09006 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47507 * 299.99838 * 1 2 3 33 33 H 1.09007 * 109.45645 * 119.96858 * 2 1 3 34 34 H 1.08997 * 109.49912 * 58.65623 * 3 2 1 35 35 H 1.08995 * 109.49472 * 298.56194 * 3 2 1 36 36 H 1.09007 * 109.58660 * 294.84739 * 4 3 2 37 37 H 1.09000 * 109.70279 * 174.48926 * 4 3 2 38 38 H 1.09004 * 109.57943 * 246.15309 * 11 10 8 39 39 H 1.09003 * 109.58509 * 6.57281 * 11 10 8 40 40 H 1.08998 * 109.49435 * 174.58479 * 12 11 10 41 41 H 1.08998 * 109.49664 * 294.67869 * 12 11 10 42 42 H 0.97003 * 120.00430 * 94.99980 * 15 13 12 43 43 H 0.97007 * 119.99973 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.49743 * 181.31753 * 24 13 12 45 45 H 1.09001 * 109.49496 * 301.37935 * 24 13 12 46 46 H 1.09001 * 109.46984 * 66.68931 * 27 25 10 47 47 H 1.09001 * 109.46649 * 186.67931 * 27 25 10 48 48 H 1.08995 * 109.47177 * 306.68464 * 27 25 10 49 49 H 1.09001 * 109.58438 * 173.14037 * 28 5 4 50 50 H 1.08994 * 109.58569 * 293.56711 * 28 5 4 51 51 H 1.09005 * 109.55688 * 185.55127 * 29 28 5 52 52 H 1.08997 * 109.36428 * 65.50137 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5713 1.4393 0.0350 5 7 4.0678 0.6238 -1.0818 6 6 4.9615 1.1277 -1.9558 7 8 5.2937 2.2924 -1.8802 8 6 5.5431 0.2522 -3.0182 9 8 4.9543 0.0994 -4.0682 10 7 6.7244 -0.3632 -2.8123 11 6 7.5063 -0.0953 -1.5975 12 6 7.8234 -1.4277 -0.9114 13 6 8.5132 -2.3598 -1.9101 14 1 9.4257 -1.8887 -2.2759 15 7 8.8478 -3.6230 -1.2480 16 6 10.0131 -3.7362 -0.5378 17 1 10.6853 -2.8940 -0.4654 18 6 10.3298 -4.9330 0.0901 19 7 9.5104 -5.9592 0.0023 20 14 11.9191 -5.0872 1.0595 21 1 11.6773 -4.6974 2.4718 22 1 12.3957 -6.4927 1.0086 23 1 12.9480 -4.1940 0.4687 24 6 7.5742 -2.6340 -3.0871 25 6 7.2516 -1.3195 -3.7953 26 1 8.1594 -0.9177 -4.2453 27 6 6.2036 -1.5683 -4.8819 28 6 3.5672 -0.7495 -1.2311 29 6 2.0399 -0.7230 -1.2487 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8931 -0.5134 0.8904 34 1 1.6571 1.9641 0.8775 35 1 1.6978 1.9496 -0.9024 36 1 3.9142 1.0144 0.9785 37 1 3.9436 2.4590 -0.0633 38 1 8.4353 0.4084 -1.8648 39 1 6.9277 0.5350 -0.9222 40 1 8.4837 -1.2515 -0.0623 41 1 6.8982 -1.8873 -0.5641 42 1 8.2439 -4.3794 -1.3127 43 1 9.7319 -6.7957 0.4407 44 1 8.0572 -3.3164 -3.7865 45 1 6.6515 -3.0828 -2.7193 46 1 6.0548 -0.6556 -5.4589 47 1 6.5475 -2.3640 -5.5428 48 1 5.2622 -1.8626 -4.4181 49 1 3.9347 -1.1727 -2.1659 50 1 3.9098 -1.3564 -0.3931 51 1 1.6574 -1.7436 -1.2599 52 1 1.6979 -0.1960 -2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044769554.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:15 Heat of formation + Delta-G solvation = -53.655678 kcal Electronic energy + Delta-G solvation = -31387.455130 eV Core-core repulsion = 27387.196327 eV Total energy + Delta-G solvation = -4000.258803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25807 -39.62154 -37.97219 -37.41829 -34.63122 -34.27616 -32.75769 -32.02751 -31.52588 -29.44767 -28.75860 -27.18739 -25.41525 -24.27936 -23.69503 -23.01990 -22.86700 -21.36809 -20.48552 -19.88470 -18.85964 -17.61962 -17.14477 -16.95485 -16.38170 -15.45985 -15.24572 -15.03137 -14.90077 -14.82139 -14.58114 -14.08867 -13.93411 -13.84502 -13.75791 -13.52746 -13.31267 -13.20754 -12.92248 -12.72503 -12.27497 -12.21599 -12.17784 -12.14507 -11.71269 -11.57536 -11.47731 -11.26980 -11.04046 -10.95402 -10.88527 -10.86896 -10.74762 -10.72455 -10.52074 -10.29225 -9.91935 -9.76605 -9.09110 -8.97497 -8.95145 -8.62612 -7.04645 -5.83378 -3.12844 2.01455 2.08831 2.57043 3.20846 3.38873 3.44712 3.46021 4.04698 4.36532 4.43127 4.48535 4.51920 4.74281 4.91148 4.96311 5.02285 5.05006 5.15078 5.16260 5.25809 5.29594 5.31750 5.39733 5.44309 5.47944 5.50433 5.55428 5.56546 5.62999 5.68467 5.73154 5.77475 5.79660 5.85783 5.90696 6.03437 6.08164 6.16028 6.17999 6.23188 6.33049 6.36457 6.44326 6.60071 6.79364 6.92779 6.94911 7.23260 7.63644 7.67301 7.85632 8.34692 9.46346 10.02538 10.37337 11.38980 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.003146 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.503502 B = 8898.398026 C = 9777.825651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.129 4.129 4 C 0.108 3.892 5 N -0.595 5.595 6 C 0.518 3.482 7 O -0.520 6.520 8 C 0.516 3.484 9 O -0.515 6.515 10 N -0.583 5.583 11 C 0.106 3.894 12 C -0.149 4.149 13 C 0.178 3.822 14 H 0.050 0.950 15 N -0.723 5.723 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.134 4.134 25 C 0.145 3.855 26 H 0.077 0.923 27 C -0.139 4.139 28 C 0.104 3.896 29 C -0.129 4.129 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.923 12.293 -1.929 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.167 4.167 4 C -0.014 4.014 5 N -0.330 5.330 6 C 0.301 3.699 7 O -0.395 6.395 8 C 0.299 3.701 9 O -0.391 6.391 10 N -0.318 5.318 11 C -0.017 4.017 12 C -0.190 4.190 13 C 0.068 3.932 14 H 0.068 0.932 15 N -0.363 5.363 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.173 4.173 25 C 0.043 3.957 26 H 0.095 0.905 27 C -0.196 4.196 28 C -0.018 4.018 29 C -0.167 4.167 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.098 0.902 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.847 12.825 -2.379 20.525 hybrid contribution 0.676 -0.437 0.770 1.114 sum -15.171 12.387 -1.609 19.652 Atomic orbital electron populations 1.21814 0.94813 1.01906 1.01808 1.21153 0.95934 0.95797 0.98417 1.21984 0.94767 0.97002 1.02946 1.21720 0.94115 0.97135 0.88405 1.48109 1.42556 1.14944 1.27414 1.20519 0.79811 0.88249 0.81307 1.90778 1.61277 1.16473 1.71006 1.20104 0.82022 0.80068 0.87954 1.90846 1.62044 1.60788 1.25450 1.48271 1.19524 1.41475 1.22483 1.21951 0.95794 0.98947 0.84983 1.22692 1.01790 0.94010 1.00514 1.20167 0.94628 0.88380 0.90036 0.93247 1.42406 1.23842 1.09310 1.60707 1.19225 0.97002 0.97001 1.24000 0.91151 1.24741 0.98639 0.96133 1.01263 1.69657 1.37159 1.02756 1.48396 0.86215 0.83173 0.76907 0.80032 1.21721 1.21774 1.20731 1.22233 1.00725 0.95584 0.98774 1.21361 0.97248 0.88591 0.88504 0.90496 1.22209 0.97814 1.02057 0.97545 1.21766 0.94869 0.81840 1.03339 1.21899 0.94443 1.01658 0.98703 0.92696 0.92477 0.92588 0.90670 0.90450 0.91362 0.90708 0.88706 0.90627 0.90886 0.90335 0.92130 0.78234 0.93471 0.90150 0.91692 0.90678 0.93083 0.91852 0.89616 0.90299 0.90165 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.09 -0.68 2.68 -90.58 -0.24 -0.92 16 3 C -0.13 -0.98 5.36 -26.61 -0.14 -1.12 16 4 C 0.11 1.01 6.44 -3.71 -0.02 0.99 16 5 N -0.59 -6.84 2.98 -173.54 -0.52 -7.36 16 6 C 0.52 7.51 5.48 -11.59 -0.06 7.44 16 7 O -0.52 -8.79 16.49 5.50 0.09 -8.70 16 8 C 0.52 7.73 5.42 -11.59 -0.06 7.67 16 9 O -0.52 -8.45 12.46 5.50 0.07 -8.38 16 10 N -0.58 -8.23 2.98 -165.98 -0.49 -8.72 16 11 C 0.11 1.46 6.36 -3.71 -0.02 1.43 16 12 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 13 C 0.18 3.22 2.73 -67.89 -0.19 3.04 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -16.91 5.12 -53.39 -0.27 -17.18 16 16 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 20 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.13 -2.06 4.81 -26.83 -0.13 -2.19 16 25 C 0.15 2.00 3.48 -67.82 -0.24 1.76 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 C -0.14 -1.85 7.60 37.16 0.28 -1.57 16 28 C 0.10 1.05 6.30 -3.93 -0.02 1.03 16 29 C -0.13 -1.07 5.34 -26.84 -0.14 -1.21 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.99 7.00 -51.93 -0.36 0.63 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.97 6.29 -51.93 -0.33 0.65 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.38 9.65 7.80 -40.82 -0.32 9.33 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.08 6.61 -51.93 -0.34 0.73 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.89 6.89 -51.93 -0.36 0.53 16 49 H 0.09 0.98 6.23 -51.93 -0.32 0.66 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -30.94 399.70 -9.64 -40.57 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -9.19 Total: 7.16 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.05 Total: 6.34 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.56 Total: -59.69 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.16 Total: -17.07 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.94 -9.64 -40.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769554.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.081 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds