Wall clock time and date at job start Tue Mar 31 2020 19:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 119.99995 * 2 1 4 4 N 1.34775 * 119.99876 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63326 * 4.88412 * 4 2 1 6 6 C 1.53196 * 108.77839 * 233.63323 * 5 4 2 7 7 C 1.53039 * 109.30790 * 305.36538 * 6 5 4 8 8 C 1.50700 * 109.45824 * 181.38653 * 7 6 5 9 9 O 1.21286 * 119.99911 * 355.74729 * 8 7 6 10 10 N 1.34780 * 120.00427 * 175.74903 * 8 7 6 11 11 C 1.46928 * 120.62396 * 356.02029 * 10 8 7 12 12 C 1.53192 * 108.77016 * 126.41418 * 11 10 8 13 13 C 1.53036 * 109.31554 * 54.63538 * 12 11 10 14 14 H 1.09001 * 109.46182 * 178.62940 * 13 12 11 15 15 N 1.46495 * 109.46445 * 58.65241 * 13 12 11 16 16 C 1.36931 * 120.00157 * 84.97296 * 15 13 12 17 17 H 1.07998 * 120.00267 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99905 * 180.02562 * 16 15 13 19 19 N 1.31609 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99618 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47618 * 60.00076 * 20 18 16 22 22 H 1.48498 * 109.47319 * 299.99563 * 20 18 16 23 23 H 1.48505 * 109.46954 * 180.02562 * 20 18 16 24 24 C 1.53046 * 109.52364 * 298.63625 * 13 12 11 25 25 C 1.46921 * 120.63428 * 176.04058 * 10 8 7 26 26 H 1.08998 * 109.58705 * 113.79869 * 25 10 8 27 27 C 1.53006 * 109.58647 * 353.51924 * 25 10 8 28 28 C 1.53038 * 109.54069 * 61.36719 * 7 6 5 29 29 C 1.46926 * 120.62711 * 184.91049 * 4 2 1 30 30 H 1.09002 * 109.47388 * 174.70319 * 1 2 3 31 31 H 1.09006 * 109.47407 * 294.70047 * 1 2 3 32 32 H 1.09003 * 109.47347 * 54.70339 * 1 2 3 33 33 H 1.09006 * 109.58612 * 113.84150 * 5 4 2 34 34 H 1.09003 * 109.58573 * 353.41907 * 5 4 2 35 35 H 1.08998 * 109.49814 * 185.41555 * 6 5 4 36 36 H 1.08998 * 109.52283 * 65.33122 * 6 5 4 37 37 H 1.09001 * 109.45766 * 301.35199 * 7 6 5 38 38 H 1.08997 * 109.58875 * 6.62561 * 11 10 8 39 39 H 1.09005 * 109.70073 * 246.26693 * 11 10 8 40 40 H 1.08999 * 109.49986 * 294.67407 * 12 11 10 41 41 H 1.09010 * 109.49630 * 174.58250 * 12 11 10 42 42 H 0.97005 * 119.99725 * 264.97588 * 15 13 12 43 43 H 0.97003 * 120.00251 * 359.97438 * 19 18 16 44 44 H 1.09004 * 109.49565 * 181.30898 * 24 13 12 45 45 H 1.08992 * 109.50023 * 301.40692 * 24 13 12 46 46 H 1.08999 * 109.47105 * 67.07292 * 27 25 10 47 47 H 1.08996 * 109.47044 * 187.07613 * 27 25 10 48 48 H 1.09000 * 109.46755 * 307.07713 * 27 25 10 49 49 H 1.08988 * 109.50012 * 58.58118 * 28 7 6 50 50 H 1.09002 * 109.49732 * 178.68565 * 28 7 6 51 51 H 1.09005 * 109.58727 * 246.14925 * 29 4 2 52 52 H 1.08992 * 109.59283 * 6.58041 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4643 -2.4454 -0.1065 6 6 1.8857 -3.3461 1.0587 7 6 3.4103 -3.4792 1.0697 8 6 3.8265 -4.3921 2.1941 9 8 2.9945 -4.8258 2.9627 10 7 5.1233 -4.7267 2.3458 11 6 6.1301 -4.2805 1.3732 12 6 7.2578 -3.5654 2.1239 13 6 7.8041 -4.4885 3.2154 14 1 8.6230 -3.9912 3.7352 15 7 8.2935 -5.7279 2.6068 16 6 9.5651 -5.7874 2.1025 17 1 10.2075 -4.9208 2.1537 18 6 10.0286 -6.9618 1.5252 19 7 9.2456 -8.0177 1.4623 20 14 11.7636 -7.0432 0.8379 21 1 12.7394 -6.7673 1.9228 22 1 11.9185 -6.0299 -0.2366 23 1 12.0122 -8.3970 0.2804 24 6 6.6907 -4.8154 4.2133 25 6 5.5569 -5.5447 3.4866 26 1 5.9136 -6.5106 3.1290 27 6 4.3816 -5.7545 4.4436 28 6 4.0430 -2.1005 1.2716 29 6 3.6460 -1.1856 0.1088 30 1 -0.3634 -1.0233 -0.0949 31 1 -0.3634 0.4294 0.9337 32 1 -0.3634 0.5938 -0.8388 33 1 1.7164 -2.9277 -1.0510 34 1 0.3899 -2.2670 -0.0604 35 1 1.4354 -4.3314 0.9383 36 1 1.5522 -2.9060 1.9985 37 1 3.7451 -3.8968 0.1201 38 1 5.6717 -3.5937 0.6617 39 1 6.5340 -5.1419 0.8411 40 1 6.8710 -2.6534 2.5785 41 1 8.0570 -3.3141 1.4264 42 1 7.7165 -6.5064 2.5610 43 1 8.3447 -7.9756 1.8195 44 1 7.0862 -5.4540 5.0033 45 1 6.3093 -3.8917 4.6484 46 1 3.6247 -6.3718 3.9596 47 1 4.7332 -6.2523 5.3472 48 1 3.9495 -4.7886 4.7054 49 1 3.6893 -1.6716 2.2090 50 1 5.1281 -2.1992 1.3026 51 1 4.0761 -1.5652 -0.8181 52 1 4.0112 -0.1761 0.2969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:33 Heat of formation + Delta-G solvation = -40.042661 kcal Electronic energy + Delta-G solvation = -31461.158325 eV Core-core repulsion = 27461.489826 eV Total energy + Delta-G solvation = -3999.668498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.01343 -40.03280 -37.93997 -37.10073 -34.51757 -33.94605 -32.14234 -32.03807 -31.76100 -29.65961 -28.91306 -27.18684 -26.00758 -24.09183 -23.65267 -23.45027 -22.30647 -21.31753 -20.09233 -19.28630 -18.41231 -17.47742 -17.26175 -16.75270 -16.17973 -15.92464 -15.79874 -15.41759 -14.83166 -14.75550 -14.29054 -14.08677 -13.92805 -13.78494 -13.66309 -13.60029 -13.42404 -13.07822 -13.00077 -12.57014 -12.39692 -12.25663 -12.11367 -11.96916 -11.84064 -11.67259 -11.47062 -11.30777 -11.02337 -10.93663 -10.82710 -10.73894 -10.55575 -10.38167 -10.21636 -10.02856 -10.00262 -9.21838 -9.06679 -8.99690 -8.79099 -8.25817 -7.10603 -6.15252 -3.16093 2.33269 2.66721 2.74350 3.13694 3.47947 3.50664 3.68371 4.21118 4.28641 4.38422 4.58538 4.62250 4.70422 4.76474 4.89726 4.96069 5.04337 5.05883 5.16640 5.17869 5.20648 5.29955 5.36743 5.40411 5.47372 5.51677 5.53778 5.55066 5.60546 5.62593 5.71411 5.75744 5.82613 5.89522 5.99250 6.03261 6.06042 6.17379 6.19677 6.31151 6.38222 6.48930 6.62117 6.64266 6.70582 6.95324 7.08195 7.65801 7.75654 7.87123 8.34066 8.69468 9.15850 10.02348 10.17520 11.32418 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.002929 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.430490 B = 9555.744285 C =10402.958290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.613 5.613 5 C 0.100 3.900 6 C -0.113 4.113 7 C -0.109 4.109 8 C 0.517 3.483 9 O -0.543 6.543 10 N -0.596 5.596 11 C 0.107 3.893 12 C -0.149 4.149 13 C 0.180 3.820 14 H 0.051 0.949 15 N -0.733 5.733 16 C -0.331 4.331 17 H 0.064 0.936 18 C -0.044 4.044 19 N -0.943 5.943 20 Si 1.078 2.922 21 H -0.296 1.296 22 H -0.296 1.296 23 H -0.286 1.286 24 C -0.134 4.134 25 C 0.146 3.854 26 H 0.073 0.927 27 C -0.132 4.132 28 C -0.134 4.134 29 C 0.113 3.887 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.366 0.634 43 H 0.254 0.746 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.040 0.960 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.071 0.929 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.280 11.776 -2.174 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.347 5.347 5 C -0.022 4.022 6 C -0.151 4.151 7 C -0.130 4.130 8 C 0.305 3.695 9 O -0.422 6.422 10 N -0.328 5.328 11 C -0.015 4.015 12 C -0.191 4.191 13 C 0.070 3.930 14 H 0.069 0.931 15 N -0.376 5.376 16 C -0.462 4.462 17 H 0.082 0.918 18 C -0.241 4.241 19 N -0.588 5.588 20 Si 0.909 3.091 21 H -0.223 1.223 22 H -0.223 1.223 23 H -0.211 1.211 24 C -0.173 4.173 25 C 0.043 3.957 26 H 0.091 0.909 27 C -0.189 4.189 28 C -0.172 4.172 29 C -0.010 4.010 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.201 0.799 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.112 0.888 51 H 0.089 0.911 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.100 11.279 -2.519 19.818 hybrid contribution -1.018 0.681 0.683 1.402 sum -17.118 11.961 -1.836 20.963 Atomic orbital electron populations 1.22047 0.91955 1.04646 1.05329 1.20805 0.90647 0.83040 0.75302 1.90716 1.70681 1.31106 1.50321 1.48226 1.07449 1.06234 1.72790 1.22003 0.97575 0.83604 0.99036 1.21721 0.93874 1.00545 0.98975 1.21337 0.97191 0.95620 0.98850 1.20440 0.82103 0.81107 0.85844 1.90719 1.51519 1.54990 1.44980 1.48174 1.06799 1.51769 1.26095 1.21882 0.88809 1.00035 0.90763 1.22516 0.97720 0.98165 1.00658 1.20108 0.93334 0.88469 0.91136 0.93067 1.42509 1.14261 1.09405 1.71465 1.20023 0.90681 0.99784 1.35668 0.91794 1.25725 1.06042 0.92088 1.00292 1.70897 1.08820 1.30102 1.48980 0.83263 0.74299 0.75692 0.75849 1.22321 1.22302 1.21104 1.22253 0.95945 1.00419 0.98716 1.21212 0.94828 0.93708 0.85934 0.90896 1.22166 0.96665 1.02761 0.97353 1.22149 1.02127 0.93461 0.99452 1.21610 0.79531 1.01674 0.98165 0.89759 0.88674 0.88815 0.90875 0.88638 0.89788 0.90569 0.88597 0.90363 0.90155 0.93118 0.90703 0.79923 0.93502 0.90876 0.91996 0.90973 0.94098 0.91878 0.90968 0.88821 0.91080 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 10.12 36.00 0.36 -0.73 16 2 C 0.51 5.29 7.80 -10.99 -0.09 5.20 16 3 O -0.55 -8.05 16.53 5.55 0.09 -7.96 16 4 N -0.61 -5.53 2.97 -172.76 -0.51 -6.04 16 5 C 0.10 0.67 6.36 -3.71 -0.02 0.64 16 6 C -0.11 -0.99 4.65 -26.61 -0.12 -1.11 16 7 C -0.11 -1.12 1.64 -91.73 -0.15 -1.27 16 8 C 0.52 7.21 6.86 -10.98 -0.08 7.13 16 9 O -0.54 -8.75 11.51 5.55 0.06 -8.69 16 10 N -0.60 -8.80 2.97 -165.23 -0.49 -9.29 16 11 C 0.11 1.57 5.25 -3.71 -0.02 1.55 16 12 C -0.15 -2.34 5.54 -26.61 -0.15 -2.49 16 13 C 0.18 3.31 3.10 -67.89 -0.21 3.10 16 14 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 15 N -0.73 -16.82 4.31 -53.39 -0.23 -17.05 16 16 C -0.33 -8.72 9.93 -15.06 -0.15 -8.87 16 17 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 18 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 19 N -0.94 -28.10 13.70 55.49 0.76 -27.34 16 20 Si 1.08 25.08 29.92 -169.99 -5.09 20.00 16 21 H -0.30 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.13 -2.16 5.08 -26.63 -0.14 -2.30 16 25 C 0.15 2.35 3.19 -67.62 -0.22 2.14 16 26 H 0.07 1.33 6.64 -51.93 -0.34 0.99 16 27 C -0.13 -2.03 7.61 37.16 0.28 -1.74 16 28 C -0.13 -1.32 4.92 -26.61 -0.13 -1.45 16 29 C 0.11 1.06 6.42 -3.71 -0.02 1.04 16 30 H 0.08 0.32 5.10 -51.93 -0.26 0.06 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.42 5.04 -51.93 -0.26 0.16 16 35 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.10 0.91 7.56 -51.93 -0.39 0.52 16 38 H 0.08 0.92 4.30 -51.93 -0.22 0.69 16 39 H 0.08 1.43 7.74 -51.93 -0.40 1.03 16 40 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 41 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 42 H 0.37 8.81 4.89 -40.82 -0.20 8.61 16 43 H 0.25 7.45 6.77 -40.82 -0.28 7.18 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.07 1.18 6.69 -51.93 -0.35 0.83 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 1.00 6.80 -51.93 -0.35 0.65 16 49 H 0.07 0.80 8.14 -51.94 -0.42 0.38 16 50 H 0.09 0.95 4.72 -51.93 -0.24 0.70 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.10 1.04 7.03 -51.93 -0.37 0.68 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -33.04 383.52 -8.91 -41.95 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.35 Total: 9.11 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.94 Total: -0.46 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.47 Total: -59.73 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.16 Total: -16.64 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.09 Total: 20.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.04 -8.91 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.904 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds