Wall clock time and date at job start Tue Mar 31 2020 19:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 119.99995 * 2 1 4 4 N 1.34775 * 119.99876 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63326 * 4.88412 * 4 2 1 6 6 C 1.53196 * 108.77839 * 233.63323 * 5 4 2 7 7 C 1.53039 * 109.30790 * 305.36538 * 6 5 4 8 8 C 1.50700 * 109.45824 * 181.38653 * 7 6 5 9 9 O 1.21286 * 119.99911 * 355.74729 * 8 7 6 10 10 N 1.34780 * 120.00427 * 175.74903 * 8 7 6 11 11 C 1.46928 * 120.62396 * 356.02029 * 10 8 7 12 12 C 1.53192 * 108.77016 * 126.41418 * 11 10 8 13 13 C 1.53036 * 109.31554 * 54.63538 * 12 11 10 14 14 H 1.09001 * 109.46182 * 178.62940 * 13 12 11 15 15 N 1.46495 * 109.46445 * 58.65241 * 13 12 11 16 16 C 1.36931 * 120.00157 * 84.97296 * 15 13 12 17 17 H 1.07998 * 120.00267 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99905 * 180.02562 * 16 15 13 19 19 N 1.31609 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99618 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47618 * 60.00076 * 20 18 16 22 22 H 1.48498 * 109.47319 * 299.99563 * 20 18 16 23 23 H 1.48505 * 109.46954 * 180.02562 * 20 18 16 24 24 C 1.53046 * 109.52364 * 298.63625 * 13 12 11 25 25 C 1.46921 * 120.63428 * 176.04058 * 10 8 7 26 26 H 1.08998 * 109.58705 * 113.79869 * 25 10 8 27 27 C 1.53006 * 109.58647 * 353.51924 * 25 10 8 28 28 C 1.53038 * 109.54069 * 61.36719 * 7 6 5 29 29 C 1.46926 * 120.62711 * 184.91049 * 4 2 1 30 30 H 1.09002 * 109.47388 * 174.70319 * 1 2 3 31 31 H 1.09006 * 109.47407 * 294.70047 * 1 2 3 32 32 H 1.09003 * 109.47347 * 54.70339 * 1 2 3 33 33 H 1.09006 * 109.58612 * 113.84150 * 5 4 2 34 34 H 1.09003 * 109.58573 * 353.41907 * 5 4 2 35 35 H 1.08998 * 109.49814 * 185.41555 * 6 5 4 36 36 H 1.08998 * 109.52283 * 65.33122 * 6 5 4 37 37 H 1.09001 * 109.45766 * 301.35199 * 7 6 5 38 38 H 1.08997 * 109.58875 * 6.62561 * 11 10 8 39 39 H 1.09005 * 109.70073 * 246.26693 * 11 10 8 40 40 H 1.08999 * 109.49986 * 294.67407 * 12 11 10 41 41 H 1.09010 * 109.49630 * 174.58250 * 12 11 10 42 42 H 0.97005 * 119.99725 * 264.97588 * 15 13 12 43 43 H 0.97003 * 120.00251 * 359.97438 * 19 18 16 44 44 H 1.09004 * 109.49565 * 181.30898 * 24 13 12 45 45 H 1.08992 * 109.50023 * 301.40692 * 24 13 12 46 46 H 1.08999 * 109.47105 * 67.07292 * 27 25 10 47 47 H 1.08996 * 109.47044 * 187.07613 * 27 25 10 48 48 H 1.09000 * 109.46755 * 307.07713 * 27 25 10 49 49 H 1.08988 * 109.50012 * 58.58118 * 28 7 6 50 50 H 1.09002 * 109.49732 * 178.68565 * 28 7 6 51 51 H 1.09005 * 109.58727 * 246.14925 * 29 4 2 52 52 H 1.08992 * 109.59283 * 6.58041 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4643 -2.4454 -0.1065 6 6 1.8857 -3.3461 1.0587 7 6 3.4103 -3.4792 1.0697 8 6 3.8265 -4.3921 2.1941 9 8 2.9945 -4.8258 2.9627 10 7 5.1233 -4.7267 2.3458 11 6 6.1301 -4.2805 1.3732 12 6 7.2578 -3.5654 2.1239 13 6 7.8041 -4.4885 3.2154 14 1 8.6230 -3.9912 3.7352 15 7 8.2935 -5.7279 2.6068 16 6 9.5651 -5.7874 2.1025 17 1 10.2075 -4.9208 2.1537 18 6 10.0286 -6.9618 1.5252 19 7 9.2456 -8.0177 1.4623 20 14 11.7636 -7.0432 0.8379 21 1 12.7394 -6.7673 1.9228 22 1 11.9185 -6.0299 -0.2366 23 1 12.0122 -8.3970 0.2804 24 6 6.6907 -4.8154 4.2133 25 6 5.5569 -5.5447 3.4866 26 1 5.9136 -6.5106 3.1290 27 6 4.3816 -5.7545 4.4436 28 6 4.0430 -2.1005 1.2716 29 6 3.6460 -1.1856 0.1088 30 1 -0.3634 -1.0233 -0.0949 31 1 -0.3634 0.4294 0.9337 32 1 -0.3634 0.5938 -0.8388 33 1 1.7164 -2.9277 -1.0510 34 1 0.3899 -2.2670 -0.0604 35 1 1.4354 -4.3314 0.9383 36 1 1.5522 -2.9060 1.9985 37 1 3.7451 -3.8968 0.1201 38 1 5.6717 -3.5937 0.6617 39 1 6.5340 -5.1419 0.8411 40 1 6.8710 -2.6534 2.5785 41 1 8.0570 -3.3141 1.4264 42 1 7.7165 -6.5064 2.5610 43 1 8.3447 -7.9756 1.8195 44 1 7.0862 -5.4540 5.0033 45 1 6.3093 -3.8917 4.6484 46 1 3.6247 -6.3718 3.9596 47 1 4.7332 -6.2523 5.3472 48 1 3.9495 -4.7886 4.7054 49 1 3.6893 -1.6716 2.2090 50 1 5.1281 -2.1992 1.3026 51 1 4.0761 -1.5652 -0.8181 52 1 4.0112 -0.1761 0.2969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044850253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:32 Heat of formation + Delta-G solvation = -60.763726 kcal Electronic energy + Delta-G solvation = -31462.056857 eV Core-core repulsion = 27461.489826 eV Total energy + Delta-G solvation = -4000.567031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.06130 -40.93876 -39.16539 -38.10574 -36.16290 -34.97038 -33.81055 -33.14226 -32.47346 -30.64980 -30.25347 -28.52877 -26.87716 -25.57982 -25.27317 -24.41011 -23.36907 -22.33858 -21.31366 -20.15145 -19.67804 -19.15133 -18.25514 -17.82909 -17.18698 -16.96104 -16.86256 -16.52132 -16.20226 -15.86309 -15.62798 -15.40174 -15.16627 -14.92877 -14.82399 -14.58990 -14.41268 -14.31760 -13.81226 -13.60550 -13.46047 -13.33735 -13.17090 -12.99606 -12.93750 -12.70899 -12.65614 -12.60845 -12.31293 -12.18097 -12.05985 -11.90711 -11.81761 -11.79009 -11.63805 -11.63035 -11.16262 -10.89410 -10.81535 -10.09023 -9.69356 -9.56296 -9.06773 -8.33191 -5.27118 1.57167 1.60217 1.61499 1.68973 1.84927 1.95008 2.05009 2.73525 3.35802 3.44420 3.58802 3.61638 3.71079 3.81369 3.85221 3.90579 3.97150 4.02057 4.10718 4.18064 4.25666 4.28280 4.36999 4.39626 4.42930 4.53197 4.58914 4.60844 4.67370 4.70736 4.74391 4.80709 4.81299 4.82624 4.91698 4.96802 5.02391 5.08935 5.16690 5.17686 5.17894 5.26945 5.30512 5.33352 5.49788 5.65877 5.66764 6.39784 6.48746 6.53866 7.13627 7.13736 7.18529 8.04512 8.16607 9.18081 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.002929 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.430490 B = 9555.744285 C =10402.958290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.504 3.496 3 O -0.603 6.603 4 N -0.612 5.612 5 C 0.103 3.897 6 C -0.107 4.107 7 C -0.104 4.104 8 C 0.514 3.486 9 O -0.564 6.564 10 N -0.598 5.598 11 C 0.117 3.883 12 C -0.140 4.140 13 C 0.172 3.828 14 H 0.042 0.958 15 N -0.741 5.741 16 C -0.320 4.320 17 H 0.066 0.934 18 C -0.104 4.104 19 N -0.978 5.978 20 Si 1.123 2.877 21 H -0.282 1.282 22 H -0.277 1.277 23 H -0.298 1.298 24 C -0.123 4.123 25 C 0.147 3.853 26 H 0.045 0.955 27 C -0.117 4.117 28 C -0.122 4.122 29 C 0.113 3.887 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.359 0.641 43 H 0.242 0.758 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.093 0.907 51 H 0.087 0.913 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.575 13.158 -2.976 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.485 6.485 4 N -0.345 5.345 5 C -0.018 4.018 6 C -0.146 4.146 7 C -0.125 4.125 8 C 0.303 3.697 9 O -0.444 6.444 10 N -0.330 5.330 11 C -0.006 4.006 12 C -0.181 4.181 13 C 0.063 3.937 14 H 0.060 0.940 15 N -0.385 5.385 16 C -0.451 4.451 17 H 0.084 0.916 18 C -0.296 4.296 19 N -0.626 5.626 20 Si 0.949 3.051 21 H -0.208 1.208 22 H -0.203 1.203 23 H -0.225 1.225 24 C -0.162 4.162 25 C 0.043 3.957 26 H 0.063 0.937 27 C -0.174 4.174 28 C -0.161 4.161 29 C -0.010 4.010 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.192 0.808 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.105 0.895 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.427 12.694 -3.304 21.812 hybrid contribution -0.661 0.276 1.014 1.242 sum -18.089 12.970 -2.290 22.376 Atomic orbital electron populations 1.22079 0.88586 1.06609 1.06004 1.21589 0.92325 0.82452 0.74140 1.90692 1.72011 1.32948 1.52835 1.48361 1.07351 1.06942 1.71840 1.22181 0.98934 0.81971 0.98721 1.21687 0.92426 1.01118 0.99372 1.21391 0.98566 0.94803 0.97719 1.21086 0.81257 0.80984 0.86342 1.90712 1.51852 1.55821 1.46036 1.48197 1.07385 1.51735 1.25730 1.21779 0.88725 0.99144 0.90917 1.22363 0.97735 0.98486 0.99506 1.20349 0.93911 0.87167 0.92257 0.93951 1.42649 1.13335 1.10799 1.71673 1.20328 0.91756 0.99344 1.33698 0.91570 1.26991 1.08925 0.92145 1.01503 1.71002 1.08831 1.31406 1.51407 0.82662 0.70957 0.75373 0.76077 1.20848 1.20296 1.22452 1.22125 0.95061 1.01144 0.97846 1.21072 0.95148 0.92813 0.86639 0.93735 1.22001 0.95790 1.02374 0.97284 1.22025 1.01875 0.93051 0.99120 1.21559 0.80296 1.00598 0.98528 0.87127 0.88113 0.87933 0.89051 0.85872 0.89549 0.91929 0.87071 0.86929 0.93600 0.90351 0.91721 0.80800 0.94771 0.91580 0.89955 0.92192 0.93183 0.92097 0.92227 0.88896 0.89524 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.12 71.23 0.72 -0.89 16 2 C 0.50 9.50 7.80 87.66 0.68 10.18 16 3 O -0.60 -17.42 16.53 -3.04 -0.05 -17.47 16 4 N -0.61 -9.53 2.97 -818.89 -2.43 -11.97 16 5 C 0.10 0.99 6.36 86.36 0.55 1.54 16 6 C -0.11 -1.60 4.65 30.67 0.14 -1.45 16 7 C -0.10 -1.90 1.64 -11.51 -0.02 -1.91 16 8 C 0.51 13.61 6.86 87.66 0.60 14.21 16 9 O -0.56 -17.61 11.51 -3.05 -0.04 -17.65 16 10 N -0.60 -17.19 2.97 -795.07 -2.36 -19.55 16 11 C 0.12 3.29 5.25 86.36 0.45 3.74 16 12 C -0.14 -4.21 5.54 30.67 0.17 -4.04 16 13 C 0.17 6.26 3.10 45.02 0.14 6.40 16 14 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 15 N -0.74 -34.63 4.31 -322.82 -1.39 -36.02 16 16 C -0.32 -16.96 9.93 84.04 0.83 -16.12 16 17 H 0.07 3.43 7.83 -2.91 -0.02 3.41 16 18 C -0.10 -5.86 5.50 84.86 0.47 -5.39 16 19 N -0.98 -59.79 13.70 21.65 0.30 -59.49 16 20 Si 1.12 50.70 29.92 68.60 2.05 52.76 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 C -0.12 -3.89 5.08 30.66 0.16 -3.73 16 25 C 0.15 4.74 3.19 44.97 0.14 4.88 16 26 H 0.04 1.70 6.64 -2.39 -0.02 1.68 16 27 C -0.12 -3.55 7.61 71.98 0.55 -3.00 16 28 C -0.12 -2.16 4.92 30.67 0.15 -2.01 16 29 C 0.11 1.91 6.42 86.36 0.55 2.47 16 30 H 0.11 0.37 5.10 -2.39 -0.01 0.36 16 31 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.12 0.53 5.04 -2.39 -0.01 0.51 16 35 H 0.09 1.29 8.11 -2.39 -0.02 1.27 16 36 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16 37 H 0.11 1.76 7.56 -2.39 -0.02 1.74 16 38 H 0.11 2.38 4.30 -2.39 -0.01 2.37 16 39 H 0.05 1.64 7.74 -2.38 -0.02 1.62 16 40 H 0.08 1.95 7.66 -2.39 -0.02 1.93 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.36 17.90 4.89 -92.70 -0.45 17.45 16 43 H 0.24 14.79 6.77 -92.71 -0.63 14.16 16 44 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 45 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.06 1.96 6.69 -2.39 -0.02 1.95 16 47 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.06 1.87 6.80 -2.39 -0.02 1.85 16 49 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.09 1.64 4.72 -2.39 -0.01 1.63 16 51 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 52 H 0.08 1.65 7.03 -2.39 -0.02 1.64 16 Total: -1.00 -74.02 383.52 2.99 -71.03 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.62 Total: 33.48 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.29 Total: 4.88 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -5.89 Total: -127.03 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.09 Total: -35.11 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.76 kcal Total: -74.02 2.99 -71.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.265 kcal (2) G-P(sol) polarization free energy of solvation -74.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds